data_1DGK # _model_server_result.job_id JcIsYcU7SiE-CX-0vvLT_Q _model_server_result.datetime_utc '2025-07-19 21:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":920}' # _entry.id 1DGK # _exptl.entry_id 1DGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DGK _cell.length_a 145.78 _cell.length_b 146.83 _cell.length_c 58.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 328 n n P O2 PO4 sing 329 n n P O3 PO4 sing 330 n n P O4 PO4 sing 331 n n # _atom_sites.entry_id 1DGK _atom_sites.fract_transf_matrix[1][1] 0.00686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC N 1 918 915 GLC GLC . C 2 GLC N 1 919 917 GLC GLC . D 3 PO4 N 1 920 916 PO4 PO4 . E 4 ADP N 1 921 918 ADP ADP . F 4 ADP N 1 922 919 ADP ADP . G 5 HOH N 1 923 1 HOH WAT . G 5 HOH N 2 924 2 HOH WAT . G 5 HOH N 3 925 3 HOH WAT . G 5 HOH N 4 926 4 HOH WAT . G 5 HOH N 5 927 5 HOH WAT . G 5 HOH N 6 928 6 HOH WAT . G 5 HOH N 7 929 7 HOH WAT . G 5 HOH N 8 930 8 HOH WAT . G 5 HOH N 9 931 9 HOH WAT . G 5 HOH N 10 932 10 HOH WAT . G 5 HOH N 11 933 11 HOH WAT . G 5 HOH N 12 934 12 HOH WAT . G 5 HOH N 13 935 13 HOH WAT . G 5 HOH N 14 936 14 HOH WAT . G 5 HOH N 15 937 15 HOH WAT . G 5 HOH N 16 938 16 HOH WAT . G 5 HOH N 17 939 17 HOH WAT . G 5 HOH N 18 940 18 HOH WAT . G 5 HOH N 19 941 19 HOH WAT . G 5 HOH N 20 942 20 HOH WAT . G 5 HOH N 21 943 21 HOH WAT . G 5 HOH N 22 944 22 HOH WAT . G 5 HOH N 23 945 23 HOH WAT . G 5 HOH N 24 946 24 HOH WAT . G 5 HOH N 25 947 25 HOH WAT . G 5 HOH N 26 948 26 HOH WAT . G 5 HOH N 27 949 27 HOH WAT . G 5 HOH N 28 950 28 HOH WAT . G 5 HOH N 29 951 29 HOH WAT . G 5 HOH N 30 952 30 HOH WAT . G 5 HOH N 31 953 31 HOH WAT . G 5 HOH N 32 954 32 HOH WAT . G 5 HOH N 33 955 33 HOH WAT . G 5 HOH N 34 956 34 HOH WAT . G 5 HOH N 35 957 35 HOH WAT . G 5 HOH N 36 958 36 HOH WAT . G 5 HOH N 37 959 37 HOH WAT . G 5 HOH N 38 960 38 HOH WAT . G 5 HOH N 39 961 39 HOH WAT . G 5 HOH N 40 962 40 HOH WAT . G 5 HOH N 41 963 41 HOH WAT . G 5 HOH N 42 964 42 HOH WAT . G 5 HOH N 43 965 43 HOH WAT . G 5 HOH N 44 966 44 HOH WAT . G 5 HOH N 45 967 45 HOH WAT . G 5 HOH N 46 968 46 HOH WAT . G 5 HOH N 47 969 47 HOH WAT . G 5 HOH N 48 970 48 HOH WAT . G 5 HOH N 49 971 49 HOH WAT . G 5 HOH N 50 972 50 HOH WAT . G 5 HOH N 51 973 51 HOH WAT . G 5 HOH N 52 974 52 HOH WAT . G 5 HOH N 53 975 53 HOH WAT . G 5 HOH N 54 976 54 HOH WAT . G 5 HOH N 55 977 55 HOH WAT . G 5 HOH N 56 978 56 HOH WAT . G 5 HOH N 57 979 57 HOH WAT . G 5 HOH N 58 980 58 HOH WAT . G 5 HOH N 59 981 59 HOH WAT . G 5 HOH N 60 982 60 HOH WAT . G 5 HOH N 61 983 61 HOH WAT . G 5 HOH N 62 984 62 HOH WAT . G 5 HOH N 63 985 63 HOH WAT . G 5 HOH N 64 986 64 HOH WAT . G 5 HOH N 65 987 65 HOH WAT . G 5 HOH N 66 988 66 HOH WAT . G 5 HOH N 67 989 67 HOH WAT . G 5 HOH N 68 990 68 HOH WAT . G 5 HOH N 69 991 69 HOH WAT . G 5 HOH N 70 992 70 HOH WAT . G 5 HOH N 71 993 71 HOH WAT . G 5 HOH N 72 994 72 HOH WAT . G 5 HOH N 73 995 73 HOH WAT . G 5 HOH N 74 996 74 HOH WAT . G 5 HOH N 75 997 75 HOH WAT . G 5 HOH N 76 998 76 HOH WAT . G 5 HOH N 77 999 77 HOH WAT . G 5 HOH N 78 1000 78 HOH WAT . G 5 HOH N 79 1001 79 HOH WAT . G 5 HOH N 80 1002 80 HOH WAT . G 5 HOH N 81 1003 81 HOH WAT . G 5 HOH N 82 1004 82 HOH WAT . G 5 HOH N 83 1005 83 HOH WAT . G 5 HOH N 84 1006 84 HOH WAT . G 5 HOH N 85 1007 85 HOH WAT . G 5 HOH N 86 1008 86 HOH WAT . G 5 HOH N 87 1009 87 HOH WAT . G 5 HOH N 88 1010 88 HOH WAT . G 5 HOH N 89 1011 89 HOH WAT . G 5 HOH N 90 1012 90 HOH WAT . G 5 HOH N 91 1013 91 HOH WAT . G 5 HOH N 92 1014 92 HOH WAT . G 5 HOH N 93 1015 93 HOH WAT . G 5 HOH N 94 1016 94 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 39.361 42.685 21.474 1 40.61 ? P PO4 920 N 1 HETATM 2 O O1 PO4 . . . D 3 37.951 42.493 21.851 1 38.34 ? O1 PO4 920 N 1 HETATM 3 O O2 PO4 . . . D 3 39.698 44.086 21.853 1 41.94 ? O2 PO4 920 N 1 HETATM 4 O O3 PO4 . . . D 3 40.289 42.034 22.418 1 39.85 ? O3 PO4 920 N 1 HETATM 5 O O4 PO4 . . . D 3 39.74 42.394 19.94 1 37.57 ? O4 PO4 920 N 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #