data_1DGM # _model_server_result.job_id zA9uAVnSNP2i_FbqGrBLFQ _model_server_result.datetime_utc '2024-11-09 07:30:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":380}' # _entry.id 1DGM # _exptl.entry_id 1DGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.3 _cell.angle_gamma 90 _cell.entry_id 1DGM _cell.length_a 47.55 _cell.length_b 68.75 _cell.length_c 57.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 340 A CYS 340 1_555 A SG CYS 363 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O ALA 185 A ALA 185 1_555 B MG MG . A MG 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A O ILE 188 A ILE 188 1_555 B MG MG . A MG 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O ALA 191 A ALA 191 1_555 B MG MG . A MG 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 B MG MG . A MG 380 1_555 F O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 B MG MG . A MG 380 1_555 F O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DGM _atom_sites.fract_transf_matrix[1][1] 0.02103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 380 380 MG MG2 . C 3 CL A 1 385 385 CL CL1 . D 4 ADN A 1 375 375 ADN ADO . E 5 ACY A 1 370 370 ACY ACY . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 404 HOH HOH . F 6 HOH A 5 405 405 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 407 HOH HOH . F 6 HOH A 8 408 408 HOH HOH . F 6 HOH A 9 409 409 HOH HOH . F 6 HOH A 10 410 410 HOH HOH . F 6 HOH A 11 411 411 HOH HOH . F 6 HOH A 12 412 412 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 414 HOH HOH . F 6 HOH A 15 415 415 HOH HOH . F 6 HOH A 16 416 416 HOH HOH . F 6 HOH A 17 417 417 HOH HOH . F 6 HOH A 18 418 418 HOH HOH . F 6 HOH A 19 419 419 HOH HOH . F 6 HOH A 20 420 420 HOH HOH . F 6 HOH A 21 421 421 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 424 HOH HOH . F 6 HOH A 25 425 425 HOH HOH . F 6 HOH A 26 426 426 HOH HOH . F 6 HOH A 27 427 427 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . F 6 HOH A 38 438 438 HOH HOH . F 6 HOH A 39 439 439 HOH HOH . F 6 HOH A 40 440 440 HOH HOH . F 6 HOH A 41 441 441 HOH HOH . F 6 HOH A 42 442 442 HOH HOH . F 6 HOH A 43 443 443 HOH HOH . F 6 HOH A 44 444 444 HOH HOH . F 6 HOH A 45 445 445 HOH HOH . F 6 HOH A 46 446 446 HOH HOH . F 6 HOH A 47 447 447 HOH HOH . F 6 HOH A 48 448 448 HOH HOH . F 6 HOH A 49 449 449 HOH HOH . F 6 HOH A 50 450 450 HOH HOH . F 6 HOH A 51 451 451 HOH HOH . F 6 HOH A 52 452 452 HOH HOH . F 6 HOH A 53 453 453 HOH HOH . F 6 HOH A 54 454 454 HOH HOH . F 6 HOH A 55 455 455 HOH HOH . F 6 HOH A 56 456 456 HOH HOH . F 6 HOH A 57 457 457 HOH HOH . F 6 HOH A 58 458 458 HOH HOH . F 6 HOH A 59 459 459 HOH HOH . F 6 HOH A 60 460 460 HOH HOH . F 6 HOH A 61 461 461 HOH HOH . F 6 HOH A 62 462 462 HOH HOH . F 6 HOH A 63 463 463 HOH HOH . F 6 HOH A 64 464 464 HOH HOH . F 6 HOH A 65 465 465 HOH HOH . F 6 HOH A 66 466 466 HOH HOH . F 6 HOH A 67 467 467 HOH HOH . F 6 HOH A 68 468 468 HOH HOH . F 6 HOH A 69 469 469 HOH HOH . F 6 HOH A 70 470 470 HOH HOH . F 6 HOH A 71 471 471 HOH HOH . F 6 HOH A 72 472 472 HOH HOH . F 6 HOH A 73 473 473 HOH HOH . F 6 HOH A 74 474 474 HOH HOH . F 6 HOH A 75 475 475 HOH HOH . F 6 HOH A 76 476 476 HOH HOH . F 6 HOH A 77 477 477 HOH HOH . F 6 HOH A 78 478 478 HOH HOH . F 6 HOH A 79 479 479 HOH HOH . F 6 HOH A 80 480 480 HOH HOH . F 6 HOH A 81 481 481 HOH HOH . F 6 HOH A 82 482 482 HOH HOH . F 6 HOH A 83 483 483 HOH HOH . F 6 HOH A 84 484 484 HOH HOH . F 6 HOH A 85 485 485 HOH HOH . F 6 HOH A 86 486 486 HOH HOH . F 6 HOH A 87 487 487 HOH HOH . F 6 HOH A 88 488 488 HOH HOH . F 6 HOH A 89 489 489 HOH HOH . F 6 HOH A 90 490 490 HOH HOH . F 6 HOH A 91 491 491 HOH HOH . F 6 HOH A 92 492 492 HOH HOH . F 6 HOH A 93 493 493 HOH HOH . F 6 HOH A 94 494 494 HOH HOH . F 6 HOH A 95 495 495 HOH HOH . F 6 HOH A 96 496 496 HOH HOH . F 6 HOH A 97 497 497 HOH HOH . F 6 HOH A 98 498 498 HOH HOH . F 6 HOH A 99 499 499 HOH HOH . F 6 HOH A 100 500 500 HOH HOH . F 6 HOH A 101 501 501 HOH HOH . F 6 HOH A 102 502 502 HOH HOH . F 6 HOH A 103 503 503 HOH HOH . F 6 HOH A 104 504 504 HOH HOH . F 6 HOH A 105 505 505 HOH HOH . F 6 HOH A 106 506 506 HOH HOH . F 6 HOH A 107 507 507 HOH HOH . F 6 HOH A 108 508 508 HOH HOH . F 6 HOH A 109 509 509 HOH HOH . F 6 HOH A 110 510 510 HOH HOH . F 6 HOH A 111 511 511 HOH HOH . F 6 HOH A 112 512 512 HOH HOH . F 6 HOH A 113 513 513 HOH HOH . F 6 HOH A 114 514 514 HOH HOH . F 6 HOH A 115 515 515 HOH HOH . F 6 HOH A 116 516 516 HOH HOH . F 6 HOH A 117 517 517 HOH HOH . F 6 HOH A 118 518 518 HOH HOH . F 6 HOH A 119 519 519 HOH HOH . F 6 HOH A 120 520 520 HOH HOH . F 6 HOH A 121 521 521 HOH HOH . F 6 HOH A 122 522 522 HOH HOH . F 6 HOH A 123 523 523 HOH HOH . F 6 HOH A 124 524 524 HOH HOH . F 6 HOH A 125 525 525 HOH HOH . F 6 HOH A 126 526 526 HOH HOH . F 6 HOH A 127 527 527 HOH HOH . F 6 HOH A 128 528 528 HOH HOH . F 6 HOH A 129 529 529 HOH HOH . F 6 HOH A 130 530 530 HOH HOH . F 6 HOH A 131 531 531 HOH HOH . F 6 HOH A 132 532 532 HOH HOH . F 6 HOH A 133 533 533 HOH HOH . F 6 HOH A 134 534 534 HOH HOH . F 6 HOH A 135 535 535 HOH HOH . F 6 HOH A 136 536 536 HOH HOH . F 6 HOH A 137 537 537 HOH HOH . F 6 HOH A 138 538 538 HOH HOH . F 6 HOH A 139 539 539 HOH HOH . F 6 HOH A 140 540 540 HOH HOH . F 6 HOH A 141 541 541 HOH HOH . F 6 HOH A 142 542 542 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.639 _atom_site.Cartn_y -12.804 _atom_site.Cartn_z 31.752 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 380 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #