data_1DGP # _model_server_result.job_id QasarTbesGFhLoQmZKAhdA _model_server_result.datetime_utc '2024-11-22 08:18:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1DGP # _exptl.entry_id 1DGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DGP _cell.length_a 208.2 _cell.length_b 208.2 _cell.length_c 139.6 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C15 H26 O' _chem_comp.formula_weight 222.366 _chem_comp.id FOF _chem_comp.mon_nstd_flag . _chem_comp.name (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms trans,trans-Farnesol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FOF sing 83 n n C3 C2 FOF sing 84 n n C2 C4 FOF doub 85 n n C4 C5 FOF sing 86 n n C5 C6 FOF sing 87 n n C6 C7 FOF sing 88 n n C8 C7 FOF sing 89 n n C7 C9 FOF doub 90 e n C9 C10 FOF sing 91 n n C15 C14 FOF sing 92 n n C15 O1 FOF sing 93 n n C10 C11 FOF sing 94 n n C14 C12 FOF doub 95 e n C13 C12 FOF sing 96 n n C12 C11 FOF sing 97 n n C1 H1 FOF sing 98 n n C1 H2 FOF sing 99 n n C1 H3 FOF sing 100 n n C3 H4 FOF sing 101 n n C3 H5 FOF sing 102 n n C3 H6 FOF sing 103 n n C4 H7 FOF sing 104 n n C5 H8 FOF sing 105 n n C5 H9 FOF sing 106 n n C6 H10 FOF sing 107 n n C6 H11 FOF sing 108 n n C8 H12 FOF sing 109 n n C8 H13 FOF sing 110 n n C8 H14 FOF sing 111 n n C9 H15 FOF sing 112 n n C10 H16 FOF sing 113 n n C10 H17 FOF sing 114 n n C11 H18 FOF sing 115 n n C11 H19 FOF sing 116 n n C13 H20 FOF sing 117 n n C13 H21 FOF sing 118 n n C13 H22 FOF sing 119 n n C14 H23 FOF sing 120 n n C15 H24 FOF sing 121 n n C15 H25 FOF sing 122 n n O1 H26 FOF sing 123 n n # _atom_sites.entry_id 1DGP _atom_sites.fract_transf_matrix[1][1] 0.004803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FOF A 1 401 0 FOF FOH . D 3 FOH A 1 402 2 FOH FOH . E 2 FOF B 1 401 1 FOF FOH . F 3 FOH B 1 402 3 FOH FOH . G 4 HOH A 1 601 601 HOH WAT . G 4 HOH A 2 602 602 HOH WAT . G 4 HOH A 3 603 603 HOH WAT . G 4 HOH A 4 604 604 HOH WAT . G 4 HOH A 5 605 605 HOH WAT . G 4 HOH A 6 606 606 HOH WAT . G 4 HOH A 7 607 607 HOH WAT . G 4 HOH A 8 608 608 HOH WAT . G 4 HOH A 9 609 609 HOH WAT . G 4 HOH A 10 610 610 HOH WAT . G 4 HOH A 11 611 611 HOH WAT . G 4 HOH A 12 612 612 HOH WAT . G 4 HOH A 13 613 613 HOH WAT . G 4 HOH A 14 614 615 HOH WAT . G 4 HOH A 15 615 616 HOH WAT . G 4 HOH A 16 616 617 HOH WAT . G 4 HOH A 17 617 618 HOH WAT . G 4 HOH A 18 618 619 HOH WAT . G 4 HOH A 19 619 620 HOH WAT . G 4 HOH A 20 620 643 HOH WAT . G 4 HOH A 21 621 644 HOH WAT . G 4 HOH A 22 622 645 HOH WAT . G 4 HOH A 23 623 646 HOH WAT . G 4 HOH A 24 624 647 HOH WAT . G 4 HOH A 25 625 648 HOH WAT . G 4 HOH A 26 626 649 HOH WAT . G 4 HOH A 27 627 651 HOH WAT . G 4 HOH A 28 628 652 HOH WAT . G 4 HOH A 29 629 654 HOH WAT . G 4 HOH A 30 630 655 HOH WAT . G 4 HOH A 31 631 656 HOH WAT . G 4 HOH A 32 632 657 HOH WAT . G 4 HOH A 33 633 658 HOH WAT . G 4 HOH A 34 634 659 HOH WAT . G 4 HOH A 35 635 660 HOH WAT . G 4 HOH A 36 636 663 HOH WAT . G 4 HOH A 37 637 664 HOH WAT . G 4 HOH A 38 638 665 HOH WAT . G 4 HOH A 39 639 666 HOH WAT . G 4 HOH A 40 640 669 HOH WAT . G 4 HOH A 41 641 670 HOH WAT . G 4 HOH A 42 642 671 HOH WAT . G 4 HOH A 43 643 672 HOH WAT . G 4 HOH A 44 644 676 HOH WAT . G 4 HOH A 45 645 677 HOH WAT . G 4 HOH A 46 646 678 HOH WAT . G 4 HOH A 47 647 680 HOH WAT . G 4 HOH A 48 648 682 HOH WAT . G 4 HOH A 49 649 684 HOH WAT . G 4 HOH A 50 650 685 HOH WAT . G 4 HOH A 51 651 686 HOH WAT . G 4 HOH A 52 652 687 HOH WAT . G 4 HOH A 53 653 688 HOH WAT . G 4 HOH A 54 654 691 HOH WAT . G 4 HOH A 55 655 693 HOH WAT . G 4 HOH A 56 656 695 HOH WAT . G 4 HOH A 57 657 696 HOH WAT . G 4 HOH A 58 658 697 HOH WAT . G 4 HOH A 59 659 698 HOH WAT . G 4 HOH A 60 660 700 HOH WAT . G 4 HOH A 61 661 701 HOH WAT . G 4 HOH A 62 662 703 HOH WAT . G 4 HOH A 63 663 704 HOH WAT . G 4 HOH A 64 664 707 HOH WAT . G 4 HOH A 65 665 708 HOH WAT . G 4 HOH A 66 666 709 HOH WAT . G 4 HOH A 67 667 710 HOH WAT . G 4 HOH A 68 668 712 HOH WAT . G 4 HOH A 69 669 714 HOH WAT . G 4 HOH A 70 670 716 HOH WAT . G 4 HOH A 71 671 717 HOH WAT . G 4 HOH A 72 672 718 HOH WAT . G 4 HOH A 73 673 719 HOH WAT . G 4 HOH A 74 674 720 HOH WAT . G 4 HOH A 75 675 723 HOH WAT . G 4 HOH A 76 676 724 HOH WAT . G 4 HOH A 77 677 726 HOH WAT . G 4 HOH A 78 678 730 HOH WAT . G 4 HOH A 79 679 731 HOH WAT . G 4 HOH A 80 680 732 HOH WAT . G 4 HOH A 81 681 733 HOH WAT . G 4 HOH A 82 682 735 HOH WAT . G 4 HOH A 83 683 736 HOH WAT . G 4 HOH A 84 684 739 HOH WAT . G 4 HOH A 85 685 743 HOH WAT . G 4 HOH A 86 686 744 HOH WAT . G 4 HOH A 87 687 745 HOH WAT . G 4 HOH A 88 688 746 HOH WAT . G 4 HOH A 89 689 747 HOH WAT . G 4 HOH A 90 690 748 HOH WAT . G 4 HOH A 91 691 749 HOH WAT . G 4 HOH A 92 692 751 HOH WAT . G 4 HOH A 93 693 752 HOH WAT . G 4 HOH A 94 694 753 HOH WAT . G 4 HOH A 95 695 754 HOH WAT . G 4 HOH A 96 696 755 HOH WAT . G 4 HOH A 97 697 756 HOH WAT . G 4 HOH A 98 698 757 HOH WAT . G 4 HOH A 99 699 758 HOH WAT . G 4 HOH A 100 700 759 HOH WAT . G 4 HOH A 101 701 760 HOH WAT . G 4 HOH A 102 702 761 HOH WAT . G 4 HOH A 103 703 762 HOH WAT . G 4 HOH A 104 704 763 HOH WAT . G 4 HOH A 105 705 764 HOH WAT . G 4 HOH A 106 706 765 HOH WAT . G 4 HOH A 107 707 772 HOH WAT . G 4 HOH A 108 708 773 HOH WAT . G 4 HOH A 109 709 774 HOH WAT . G 4 HOH A 110 710 777 HOH WAT . G 4 HOH A 111 711 778 HOH WAT . G 4 HOH A 112 712 781 HOH WAT . G 4 HOH A 113 713 782 HOH WAT . G 4 HOH A 114 714 783 HOH WAT . G 4 HOH A 115 715 785 HOH WAT . G 4 HOH A 116 716 786 HOH WAT . G 4 HOH A 117 717 787 HOH WAT . G 4 HOH A 118 718 790 HOH WAT . G 4 HOH A 119 719 793 HOH WAT . G 4 HOH A 120 720 794 HOH WAT . G 4 HOH A 121 721 798 HOH WAT . G 4 HOH A 122 722 800 HOH WAT . H 4 HOH B 1 501 614 HOH WAT . H 4 HOH B 2 502 621 HOH WAT . H 4 HOH B 3 503 622 HOH WAT . H 4 HOH B 4 504 623 HOH WAT . H 4 HOH B 5 505 624 HOH WAT . H 4 HOH B 6 506 625 HOH WAT . H 4 HOH B 7 507 626 HOH WAT . H 4 HOH B 8 508 627 HOH WAT . H 4 HOH B 9 509 628 HOH WAT . H 4 HOH B 10 510 629 HOH WAT . H 4 HOH B 11 511 630 HOH WAT . H 4 HOH B 12 512 631 HOH WAT . H 4 HOH B 13 513 632 HOH WAT . H 4 HOH B 14 514 633 HOH WAT . H 4 HOH B 15 515 634 HOH WAT . H 4 HOH B 16 516 635 HOH WAT . H 4 HOH B 17 517 636 HOH WAT . H 4 HOH B 18 518 637 HOH WAT . H 4 HOH B 19 519 638 HOH WAT . H 4 HOH B 20 520 639 HOH WAT . H 4 HOH B 21 521 640 HOH WAT . H 4 HOH B 22 522 641 HOH WAT . H 4 HOH B 23 523 642 HOH WAT . H 4 HOH B 24 524 650 HOH WAT . H 4 HOH B 25 525 653 HOH WAT . H 4 HOH B 26 526 661 HOH WAT . H 4 HOH B 27 527 662 HOH WAT . H 4 HOH B 28 528 667 HOH WAT . H 4 HOH B 29 529 668 HOH WAT . H 4 HOH B 30 530 673 HOH WAT . H 4 HOH B 31 531 674 HOH WAT . H 4 HOH B 32 532 675 HOH WAT . H 4 HOH B 33 533 679 HOH WAT . H 4 HOH B 34 534 681 HOH WAT . H 4 HOH B 35 535 683 HOH WAT . H 4 HOH B 36 536 689 HOH WAT . H 4 HOH B 37 537 690 HOH WAT . H 4 HOH B 38 538 692 HOH WAT . H 4 HOH B 39 539 694 HOH WAT . H 4 HOH B 40 540 702 HOH WAT . H 4 HOH B 41 541 705 HOH WAT . H 4 HOH B 42 542 706 HOH WAT . H 4 HOH B 43 543 711 HOH WAT . H 4 HOH B 44 544 713 HOH WAT . H 4 HOH B 45 545 715 HOH WAT . H 4 HOH B 46 546 721 HOH WAT . H 4 HOH B 47 547 722 HOH WAT . H 4 HOH B 48 548 725 HOH WAT . H 4 HOH B 49 549 727 HOH WAT . H 4 HOH B 50 550 728 HOH WAT . H 4 HOH B 51 551 729 HOH WAT . H 4 HOH B 52 552 734 HOH WAT . H 4 HOH B 53 553 737 HOH WAT . H 4 HOH B 54 554 738 HOH WAT . H 4 HOH B 55 555 740 HOH WAT . H 4 HOH B 56 556 741 HOH WAT . H 4 HOH B 57 557 742 HOH WAT . H 4 HOH B 58 558 750 HOH WAT . H 4 HOH B 59 559 766 HOH WAT . H 4 HOH B 60 560 767 HOH WAT . H 4 HOH B 61 561 768 HOH WAT . H 4 HOH B 62 562 769 HOH WAT . H 4 HOH B 63 563 770 HOH WAT . H 4 HOH B 64 564 771 HOH WAT . H 4 HOH B 65 565 775 HOH WAT . H 4 HOH B 66 566 776 HOH WAT . H 4 HOH B 67 567 779 HOH WAT . H 4 HOH B 68 568 780 HOH WAT . H 4 HOH B 69 569 784 HOH WAT . H 4 HOH B 70 570 788 HOH WAT . H 4 HOH B 71 571 789 HOH WAT . H 4 HOH B 72 572 791 HOH WAT . H 4 HOH B 73 573 795 HOH WAT . H 4 HOH B 74 574 796 HOH WAT . H 4 HOH B 75 575 797 HOH WAT . H 4 HOH B 76 576 801 HOH WAT . H 4 HOH B 77 577 802 HOH WAT . H 4 HOH B 78 578 803 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FOF . A . C 2 41.164 38.325 24.896 0.5 77.12 ? C1 FOF 401 A 1 HETATM 2 C C2 FOF . A . C 2 39.914 37.52 25.229 0.5 78.3 ? C2 FOF 401 A 1 HETATM 3 C C3 FOF . A . C 2 38.568 38.21 24.998 0.5 76.89 ? C3 FOF 401 A 1 HETATM 4 C C4 FOF . A . C 2 40.027 36.252 25.707 0.5 79.2 ? C4 FOF 401 A 1 HETATM 5 C C5 FOF . A . C 2 38.921 35.27 26.105 0.5 79.26 ? C5 FOF 401 A 1 HETATM 6 C C6 FOF . A . C 2 38.691 35.129 27.646 0.5 82.13 ? C6 FOF 401 A 1 HETATM 7 C C7 FOF . A . C 2 38.146 36.403 28.295 0.5 83.72 ? C7 FOF 401 A 1 HETATM 8 C C8 FOF . A . C 2 36.742 36.869 27.88 0.5 84.47 ? C8 FOF 401 A 1 HETATM 9 C C9 FOF . A . C 2 38.913 37.104 29.193 0.5 81.41 ? C9 FOF 401 A 1 HETATM 10 C C10 FOF . A . C 2 38.606 38.416 29.951 0.5 76.76 ? C10 FOF 401 A 1 HETATM 11 C C11 FOF . A . C 2 37.247 38.572 30.697 0.5 71.01 ? C11 FOF 401 A 1 HETATM 12 C C12 FOF . A . C 2 36.42 39.788 30.268 0.5 69.16 ? C12 FOF 401 A 1 HETATM 13 C C13 FOF . A . C 2 37.102 41.159 30.154 0.5 68.26 ? C13 FOF 401 A 1 HETATM 14 C C14 FOF . A . C 2 35.098 39.658 29.993 0.5 66.68 ? C14 FOF 401 A 1 HETATM 15 C C15 FOF . A . C 2 34.144 40.768 29.558 0.5 64.32 ? C15 FOF 401 A 1 HETATM 16 O O1 FOF . A . C 2 33.318 41.077 30.672 0.5 60.91 ? O1 FOF 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #