data_1DGR
#
_model_server_result.job_id            MeZ4-_GME43rDYElmIuznQ 
_model_server_result.datetime_utc      '2025-08-31 06:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dgr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":3500}' 
#
_entry.id    1DGR 
#
_exptl.entry_id    1DGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DGR 
_cell.length_a            136.5 
_cell.length_b            150.3 
_cell.length_c            133.4 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 260 n n 
P O2 PO4 sing 261 n n 
P O3 PO4 sing 262 n n 
P O4 PO4 sing 263 n n 
#
_atom_sites.entry_id                     1DGR 
_atom_sites.fract_transf_matrix[1][1]    0.007326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006653 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 PO4 X 1 1500 500 PO4 PO4 . 
K 4 PO4 V 1 2500 500 PO4 PO4 . 
L 4 PO4 N 1 3500 500 PO4 PO4 . 
M 5 HOH A 1 501 501 HOH TIP . 
M 5 HOH A 2 502 502 HOH TIP . 
M 5 HOH A 3 503 503 HOH TIP . 
M 5 HOH A 4 504 504 HOH TIP . 
M 5 HOH A 5 507 507 HOH TIP . 
M 5 HOH A 6 508 508 HOH TIP . 
M 5 HOH A 7 509 509 HOH TIP . 
M 5 HOH A 8 510 510 HOH TIP . 
M 5 HOH A 9 514 514 HOH TIP . 
M 5 HOH A 10 516 516 HOH TIP . 
M 5 HOH A 11 554 554 HOH TIP . 
M 5 HOH A 12 566 566 HOH TIP . 
M 5 HOH A 13 568 568 HOH TIP . 
M 5 HOH A 14 569 569 HOH TIP . 
M 5 HOH A 15 573 573 HOH TIP . 
M 5 HOH A 16 576 576 HOH TIP . 
M 5 HOH A 17 577 577 HOH TIP . 
M 5 HOH A 18 580 580 HOH TIP . 
M 5 HOH A 19 581 581 HOH TIP . 
M 5 HOH A 20 585 585 HOH TIP . 
M 5 HOH A 21 630 630 HOH TIP . 
M 5 HOH A 22 644 644 HOH TIP . 
M 5 HOH A 23 645 645 HOH TIP . 
M 5 HOH A 24 647 647 HOH TIP . 
M 5 HOH A 25 651 651 HOH TIP . 
M 5 HOH A 26 652 652 HOH TIP . 
M 5 HOH A 27 657 657 HOH TIP . 
N 5 HOH X 1 512 512 HOH TIP . 
N 5 HOH X 2 517 517 HOH TIP . 
N 5 HOH X 3 518 518 HOH TIP . 
N 5 HOH X 4 519 519 HOH TIP . 
N 5 HOH X 5 520 520 HOH TIP . 
N 5 HOH X 6 523 523 HOH TIP . 
N 5 HOH X 7 528 528 HOH TIP . 
N 5 HOH X 8 555 555 HOH TIP . 
N 5 HOH X 9 575 575 HOH TIP . 
N 5 HOH X 10 578 578 HOH TIP . 
N 5 HOH X 11 591 591 HOH TIP . 
N 5 HOH X 12 592 592 HOH TIP . 
N 5 HOH X 13 593 593 HOH TIP . 
N 5 HOH X 14 594 594 HOH TIP . 
N 5 HOH X 15 595 595 HOH TIP . 
N 5 HOH X 16 638 638 HOH TIP . 
N 5 HOH X 17 653 653 HOH TIP . 
N 5 HOH X 18 654 654 HOH TIP . 
O 5 HOH Y 1 521 521 HOH TIP . 
O 5 HOH Y 2 522 522 HOH TIP . 
O 5 HOH Y 3 524 524 HOH TIP . 
O 5 HOH Y 4 531 531 HOH TIP . 
O 5 HOH Y 5 535 535 HOH TIP . 
O 5 HOH Y 6 536 536 HOH TIP . 
O 5 HOH Y 7 553 553 HOH TIP . 
O 5 HOH Y 8 558 558 HOH TIP . 
O 5 HOH Y 9 570 570 HOH TIP . 
O 5 HOH Y 10 603 603 HOH TIP . 
O 5 HOH Y 11 604 604 HOH TIP . 
O 5 HOH Y 12 607 607 HOH TIP . 
O 5 HOH Y 13 608 608 HOH TIP . 
O 5 HOH Y 14 648 648 HOH TIP . 
O 5 HOH Y 15 655 655 HOH TIP . 
O 5 HOH Y 16 656 656 HOH TIP . 
O 5 HOH Y 17 658 658 HOH TIP . 
P 5 HOH B 1 538 538 HOH TIP . 
P 5 HOH B 2 539 539 HOH TIP . 
P 5 HOH B 3 541 541 HOH TIP . 
P 5 HOH B 4 542 542 HOH TIP . 
P 5 HOH B 5 543 543 HOH TIP . 
P 5 HOH B 6 546 546 HOH TIP . 
P 5 HOH B 7 547 547 HOH TIP . 
P 5 HOH B 8 559 559 HOH TIP . 
P 5 HOH B 9 560 560 HOH TIP . 
P 5 HOH B 10 561 561 HOH TIP . 
P 5 HOH B 11 597 597 HOH TIP . 
P 5 HOH B 12 599 599 HOH TIP . 
P 5 HOH B 13 609 609 HOH TIP . 
P 5 HOH B 14 614 614 HOH TIP . 
P 5 HOH B 15 627 627 HOH TIP . 
P 5 HOH B 16 629 629 HOH TIP . 
P 5 HOH B 17 634 634 HOH TIP . 
P 5 HOH B 18 639 639 HOH TIP . 
P 5 HOH B 19 642 642 HOH TIP . 
P 5 HOH B 20 643 643 HOH TIP . 
P 5 HOH B 21 649 649 HOH TIP . 
P 5 HOH B 22 660 660 HOH TIP . 
P 5 HOH B 23 664 664 HOH TIP . 
Q 5 HOH V 1 513 513 HOH TIP . 
Q 5 HOH V 2 579 579 HOH TIP . 
Q 5 HOH V 3 590 590 HOH TIP . 
Q 5 HOH V 4 611 611 HOH TIP . 
Q 5 HOH V 5 613 613 HOH TIP . 
Q 5 HOH V 6 632 632 HOH TIP . 
Q 5 HOH V 7 635 635 HOH TIP . 
Q 5 HOH V 8 659 659 HOH TIP . 
R 5 HOH W 1 505 505 HOH TIP . 
R 5 HOH W 2 506 506 HOH TIP . 
R 5 HOH W 3 511 511 HOH TIP . 
R 5 HOH W 4 515 515 HOH TIP . 
R 5 HOH W 5 548 548 HOH TIP . 
R 5 HOH W 6 567 567 HOH TIP . 
R 5 HOH W 7 574 574 HOH TIP . 
R 5 HOH W 8 582 582 HOH TIP . 
R 5 HOH W 9 583 583 HOH TIP . 
R 5 HOH W 10 584 584 HOH TIP . 
R 5 HOH W 11 610 610 HOH TIP . 
R 5 HOH W 12 633 633 HOH TIP . 
R 5 HOH W 13 636 636 HOH TIP . 
R 5 HOH W 14 646 646 HOH TIP . 
R 5 HOH W 15 666 666 HOH TIP . 
S 5 HOH C 1 525 525 HOH TIP . 
S 5 HOH C 2 526 526 HOH TIP . 
S 5 HOH C 3 527 527 HOH TIP . 
S 5 HOH C 4 529 529 HOH TIP . 
S 5 HOH C 5 530 530 HOH TIP . 
S 5 HOH C 6 532 532 HOH TIP . 
S 5 HOH C 7 533 533 HOH TIP . 
S 5 HOH C 8 534 534 HOH TIP . 
S 5 HOH C 9 537 537 HOH TIP . 
S 5 HOH C 10 540 540 HOH TIP . 
S 5 HOH C 11 549 549 HOH TIP . 
S 5 HOH C 12 550 550 HOH TIP . 
S 5 HOH C 13 551 551 HOH TIP . 
S 5 HOH C 14 556 556 HOH TIP . 
S 5 HOH C 15 557 557 HOH TIP . 
S 5 HOH C 16 565 565 HOH TIP . 
S 5 HOH C 17 571 571 HOH TIP . 
S 5 HOH C 18 572 572 HOH TIP . 
S 5 HOH C 19 586 586 HOH TIP . 
S 5 HOH C 20 598 598 HOH TIP . 
S 5 HOH C 21 601 601 HOH TIP . 
S 5 HOH C 22 602 602 HOH TIP . 
S 5 HOH C 23 605 605 HOH TIP . 
S 5 HOH C 24 606 606 HOH TIP . 
S 5 HOH C 25 626 626 HOH TIP . 
S 5 HOH C 26 628 628 HOH TIP . 
S 5 HOH C 27 631 631 HOH TIP . 
S 5 HOH C 28 637 637 HOH TIP . 
S 5 HOH C 29 663 663 HOH TIP . 
S 5 HOH C 30 668 668 HOH TIP . 
T 5 HOH N 1 544 544 HOH TIP . 
T 5 HOH N 2 552 552 HOH TIP . 
T 5 HOH N 3 562 562 HOH TIP . 
T 5 HOH N 4 564 564 HOH TIP . 
T 5 HOH N 5 587 587 HOH TIP . 
T 5 HOH N 6 588 588 HOH TIP . 
T 5 HOH N 7 589 589 HOH TIP . 
T 5 HOH N 8 616 616 HOH TIP . 
T 5 HOH N 9 618 618 HOH TIP . 
T 5 HOH N 10 619 619 HOH TIP . 
T 5 HOH N 11 620 620 HOH TIP . 
T 5 HOH N 12 622 622 HOH TIP . 
T 5 HOH N 13 623 623 HOH TIP . 
T 5 HOH N 14 624 624 HOH TIP . 
T 5 HOH N 15 625 625 HOH TIP . 
T 5 HOH N 16 661 661 HOH TIP . 
T 5 HOH N 17 662 662 HOH TIP . 
U 5 HOH M 1 545 545 HOH TIP . 
U 5 HOH M 2 563 563 HOH TIP . 
U 5 HOH M 3 596 596 HOH TIP . 
U 5 HOH M 4 600 600 HOH TIP . 
U 5 HOH M 5 612 612 HOH TIP . 
U 5 HOH M 6 615 615 HOH TIP . 
U 5 HOH M 7 617 617 HOH TIP . 
U 5 HOH M 8 621 621 HOH TIP . 
U 5 HOH M 9 640 640 HOH TIP . 
U 5 HOH M 10 641 641 HOH TIP . 
U 5 HOH M 11 650 650 HOH TIP . 
U 5 HOH M 12 665 665 HOH TIP . 
U 5 HOH M 13 667 667 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . L 4 47.477 50.312 44.781 1 64.41 ? P PO4 3500 N 1 
HETATM 2 O O1 PO4 . . . L 4 48.658 50.912 44.099 1 64.24 ? O1 PO4 3500 N 1 
HETATM 3 O O2 PO4 . . . L 4 47.101 51.147 45.958 1 64.19 ? O2 PO4 3500 N 1 
HETATM 4 O O3 PO4 . . . L 4 47.812 48.935 45.235 1 64.19 ? O3 PO4 3500 N 1 
HETATM 5 O O4 PO4 . . . L 4 46.334 50.258 43.83 1 64.35 ? O4 PO4 3500 N 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           4 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           392 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#