data_1DGS # _model_server_result.job_id pXuolaHoowPYe44wmOm7Rg _model_server_result.datetime_utc '2024-12-21 12:34:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2701}' # _entry.id 1DGS # _exptl.entry_id 1DGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.09 _cell.angle_gamma 90 _cell.entry_id 1DGS _cell.length_a 89.21 _cell.length_b 117.33 _cell.length_c 97.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 116 A LYS 116 1_555 D P AMP . A AMP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 ? covale ? covale2 B NZ LYS 116 B LYS 2116 1_555 F P AMP . B AMP 2700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 ? covale ? covale3 A NZ LYS 116 A LYS 116 1_555 D O2P AMP . A AMP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc1 C ZN ZN . A ZN 701 1_555 A SG CYS 409 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 C ZN ZN . A ZN 701 1_555 A SG CYS 427 A CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 C ZN ZN . A ZN 701 1_555 A SG CYS 422 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc4 C ZN ZN . A ZN 701 1_555 A SG CYS 406 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc5 E ZN ZN . B ZN 2701 1_555 B SG CYS 406 B CYS 2406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 E ZN ZN . B ZN 2701 1_555 B SG CYS 427 B CYS 2427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 E ZN ZN . B ZN 2701 1_555 B SG CYS 409 B CYS 2409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc8 E ZN ZN . B ZN 2701 1_555 B SG CYS 422 B CYS 2422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DGS _atom_sites.fract_transf_matrix[1][1] 0.01121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005249 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 701 701 ZN ZN . D 3 AMP A 1 700 116 AMP LYP . E 2 ZN B 1 2701 2701 ZN ZN . F 3 AMP B 1 2700 2116 AMP LYP . G 4 HOH A 1 702 702 HOH TIP . G 4 HOH A 2 1002 1002 HOH TIP . G 4 HOH A 3 1003 1003 HOH TIP . G 4 HOH A 4 1004 1004 HOH TIP . G 4 HOH A 5 1005 1005 HOH TIP . G 4 HOH A 6 1007 1007 HOH TIP . G 4 HOH A 7 1008 1008 HOH TIP . G 4 HOH A 8 1009 1009 HOH TIP . G 4 HOH A 9 1011 1011 HOH TIP . G 4 HOH A 10 1012 1012 HOH TIP . G 4 HOH A 11 1013 1013 HOH TIP . G 4 HOH A 12 1015 1015 HOH TIP . G 4 HOH A 13 1016 1016 HOH TIP . G 4 HOH A 14 1017 1017 HOH TIP . G 4 HOH A 15 1018 1018 HOH TIP . G 4 HOH A 16 1019 1019 HOH TIP . G 4 HOH A 17 1021 1021 HOH TIP . G 4 HOH A 18 1022 1022 HOH TIP . G 4 HOH A 19 1023 1023 HOH TIP . G 4 HOH A 20 1025 1025 HOH TIP . G 4 HOH A 21 1029 1029 HOH TIP . G 4 HOH A 22 1030 1030 HOH TIP . G 4 HOH A 23 1031 1031 HOH TIP . G 4 HOH A 24 1033 1033 HOH TIP . G 4 HOH A 25 1034 1034 HOH TIP . G 4 HOH A 26 1035 1035 HOH TIP . G 4 HOH A 27 1038 1038 HOH TIP . G 4 HOH A 28 1039 1039 HOH TIP . G 4 HOH A 29 1040 1040 HOH TIP . G 4 HOH A 30 1042 1042 HOH TIP . G 4 HOH A 31 1044 1044 HOH TIP . G 4 HOH A 32 1046 1046 HOH TIP . G 4 HOH A 33 1047 1047 HOH TIP . G 4 HOH A 34 1049 1049 HOH TIP . G 4 HOH A 35 1051 1051 HOH TIP . G 4 HOH A 36 1054 1054 HOH TIP . G 4 HOH A 37 1056 1056 HOH TIP . G 4 HOH A 38 1058 1058 HOH TIP . G 4 HOH A 39 1061 1061 HOH TIP . G 4 HOH A 40 1062 1062 HOH TIP . G 4 HOH A 41 1063 1063 HOH TIP . G 4 HOH A 42 1066 1066 HOH TIP . G 4 HOH A 43 1067 1067 HOH TIP . G 4 HOH A 44 1071 1071 HOH TIP . G 4 HOH A 45 1072 1072 HOH TIP . G 4 HOH A 46 1076 1076 HOH TIP . G 4 HOH A 47 1077 1077 HOH TIP . G 4 HOH A 48 1079 1079 HOH TIP . G 4 HOH A 49 1081 1081 HOH TIP . G 4 HOH A 50 1083 1083 HOH TIP . G 4 HOH A 51 1084 1084 HOH TIP . G 4 HOH A 52 1086 1086 HOH TIP . G 4 HOH A 53 1087 1087 HOH TIP . G 4 HOH A 54 1089 1089 HOH TIP . G 4 HOH A 55 1090 1090 HOH TIP . G 4 HOH A 56 1091 1091 HOH TIP . G 4 HOH A 57 1092 1092 HOH TIP . G 4 HOH A 58 1093 1093 HOH TIP . G 4 HOH A 59 1095 1095 HOH TIP . G 4 HOH A 60 1096 1096 HOH TIP . G 4 HOH A 61 1101 1101 HOH TIP . G 4 HOH A 62 1103 1103 HOH TIP . G 4 HOH A 63 1104 1104 HOH TIP . G 4 HOH A 64 1110 1110 HOH TIP . G 4 HOH A 65 1116 1116 HOH TIP . G 4 HOH A 66 1117 1117 HOH TIP . G 4 HOH A 67 1119 1119 HOH TIP . G 4 HOH A 68 1120 1120 HOH TIP . G 4 HOH A 69 1121 1121 HOH TIP . G 4 HOH A 70 1123 1123 HOH TIP . G 4 HOH A 71 1128 1128 HOH TIP . G 4 HOH A 72 1129 1129 HOH TIP . G 4 HOH A 73 1131 1131 HOH TIP . G 4 HOH A 74 1133 1133 HOH TIP . G 4 HOH A 75 1134 1134 HOH TIP . G 4 HOH A 76 1136 1136 HOH TIP . G 4 HOH A 77 1139 1139 HOH TIP . G 4 HOH A 78 1142 1142 HOH TIP . G 4 HOH A 79 1145 1145 HOH TIP . G 4 HOH A 80 1146 1146 HOH TIP . G 4 HOH A 81 1148 1148 HOH TIP . G 4 HOH A 82 1149 1149 HOH TIP . G 4 HOH A 83 1151 1151 HOH TIP . G 4 HOH A 84 1152 1152 HOH TIP . G 4 HOH A 85 1154 1154 HOH TIP . G 4 HOH A 86 1156 1156 HOH TIP . G 4 HOH A 87 1159 1159 HOH TIP . G 4 HOH A 88 1162 1162 HOH TIP . G 4 HOH A 89 1164 1164 HOH TIP . G 4 HOH A 90 1166 1166 HOH TIP . G 4 HOH A 91 1167 1167 HOH TIP . G 4 HOH A 92 1168 1168 HOH TIP . G 4 HOH A 93 1169 1169 HOH TIP . G 4 HOH A 94 1171 1171 HOH TIP . G 4 HOH A 95 1173 1173 HOH TIP . G 4 HOH A 96 1177 1177 HOH TIP . G 4 HOH A 97 1183 1183 HOH TIP . G 4 HOH A 98 1184 1184 HOH TIP . G 4 HOH A 99 1188 1188 HOH TIP . G 4 HOH A 100 1190 1190 HOH TIP . G 4 HOH A 101 1191 1191 HOH TIP . G 4 HOH A 102 1192 1192 HOH TIP . G 4 HOH A 103 1194 1194 HOH TIP . G 4 HOH A 104 1195 1195 HOH TIP . G 4 HOH A 105 1198 1198 HOH TIP . G 4 HOH A 106 1200 1200 HOH TIP . G 4 HOH A 107 1201 1201 HOH TIP . G 4 HOH A 108 1202 1202 HOH TIP . G 4 HOH A 109 1207 1207 HOH TIP . G 4 HOH A 110 1212 1212 HOH TIP . G 4 HOH A 111 1213 1213 HOH TIP . G 4 HOH A 112 1215 1215 HOH TIP . G 4 HOH A 113 1216 1216 HOH TIP . G 4 HOH A 114 1217 1217 HOH TIP . G 4 HOH A 115 1219 1219 HOH TIP . G 4 HOH A 116 1222 1222 HOH TIP . G 4 HOH A 117 1224 1224 HOH TIP . G 4 HOH A 118 1225 1225 HOH TIP . G 4 HOH A 119 1228 1228 HOH TIP . G 4 HOH A 120 1235 1235 HOH TIP . G 4 HOH A 121 1237 1237 HOH TIP . G 4 HOH A 122 1238 1238 HOH TIP . G 4 HOH A 123 1241 1241 HOH TIP . H 4 HOH B 1 1001 1001 HOH TIP . H 4 HOH B 2 1006 1006 HOH TIP . H 4 HOH B 3 1010 1010 HOH TIP . H 4 HOH B 4 1014 1014 HOH TIP . H 4 HOH B 5 1020 1020 HOH TIP . H 4 HOH B 6 1024 1024 HOH TIP . H 4 HOH B 7 1026 1026 HOH TIP . H 4 HOH B 8 1027 1027 HOH TIP . H 4 HOH B 9 1028 1028 HOH TIP . H 4 HOH B 10 1032 1032 HOH TIP . H 4 HOH B 11 1036 1036 HOH TIP . H 4 HOH B 12 1037 1037 HOH TIP . H 4 HOH B 13 1041 1041 HOH TIP . H 4 HOH B 14 1043 1043 HOH TIP . H 4 HOH B 15 1045 1045 HOH TIP . H 4 HOH B 16 1048 1048 HOH TIP . H 4 HOH B 17 1050 1050 HOH TIP . H 4 HOH B 18 1052 1052 HOH TIP . H 4 HOH B 19 1053 1053 HOH TIP . H 4 HOH B 20 1055 1055 HOH TIP . H 4 HOH B 21 1057 1057 HOH TIP . H 4 HOH B 22 1059 1059 HOH TIP . H 4 HOH B 23 1060 1060 HOH TIP . H 4 HOH B 24 1064 1064 HOH TIP . H 4 HOH B 25 1065 1065 HOH TIP . H 4 HOH B 26 1068 1068 HOH TIP . H 4 HOH B 27 1069 1069 HOH TIP . H 4 HOH B 28 1070 1070 HOH TIP . H 4 HOH B 29 1073 1073 HOH TIP . H 4 HOH B 30 1074 1074 HOH TIP . H 4 HOH B 31 1075 1075 HOH TIP . H 4 HOH B 32 1078 1078 HOH TIP . H 4 HOH B 33 1080 1080 HOH TIP . H 4 HOH B 34 1082 1082 HOH TIP . H 4 HOH B 35 1085 1085 HOH TIP . H 4 HOH B 36 1088 1088 HOH TIP . H 4 HOH B 37 1094 1094 HOH TIP . H 4 HOH B 38 1097 1097 HOH TIP . H 4 HOH B 39 1098 1098 HOH TIP . H 4 HOH B 40 1099 1099 HOH TIP . H 4 HOH B 41 1100 1100 HOH TIP . H 4 HOH B 42 1102 1102 HOH TIP . H 4 HOH B 43 1105 1105 HOH TIP . H 4 HOH B 44 1106 1106 HOH TIP . H 4 HOH B 45 1107 1107 HOH TIP . H 4 HOH B 46 1108 1108 HOH TIP . H 4 HOH B 47 1109 1109 HOH TIP . H 4 HOH B 48 1111 1111 HOH TIP . H 4 HOH B 49 1112 1112 HOH TIP . H 4 HOH B 50 1113 1113 HOH TIP . H 4 HOH B 51 1114 1114 HOH TIP . H 4 HOH B 52 1115 1115 HOH TIP . H 4 HOH B 53 1118 1118 HOH TIP . H 4 HOH B 54 1122 1122 HOH TIP . H 4 HOH B 55 1124 1124 HOH TIP . H 4 HOH B 56 1125 1125 HOH TIP . H 4 HOH B 57 1126 1126 HOH TIP . H 4 HOH B 58 1127 1127 HOH TIP . H 4 HOH B 59 1130 1130 HOH TIP . H 4 HOH B 60 1132 1132 HOH TIP . H 4 HOH B 61 1135 1135 HOH TIP . H 4 HOH B 62 1137 1137 HOH TIP . H 4 HOH B 63 1138 1138 HOH TIP . H 4 HOH B 64 1140 1140 HOH TIP . H 4 HOH B 65 1141 1141 HOH TIP . H 4 HOH B 66 1143 1143 HOH TIP . H 4 HOH B 67 1144 1144 HOH TIP . H 4 HOH B 68 1147 1147 HOH TIP . H 4 HOH B 69 1150 1150 HOH TIP . H 4 HOH B 70 1153 1153 HOH TIP . H 4 HOH B 71 1155 1155 HOH TIP . H 4 HOH B 72 1157 1157 HOH TIP . H 4 HOH B 73 1158 1158 HOH TIP . H 4 HOH B 74 1160 1160 HOH TIP . H 4 HOH B 75 1161 1161 HOH TIP . H 4 HOH B 76 1163 1163 HOH TIP . H 4 HOH B 77 1165 1165 HOH TIP . H 4 HOH B 78 1170 1170 HOH TIP . H 4 HOH B 79 1172 1172 HOH TIP . H 4 HOH B 80 1174 1174 HOH TIP . H 4 HOH B 81 1175 1175 HOH TIP . H 4 HOH B 82 1176 1176 HOH TIP . H 4 HOH B 83 1178 1178 HOH TIP . H 4 HOH B 84 1179 1179 HOH TIP . H 4 HOH B 85 1180 1180 HOH TIP . H 4 HOH B 86 1181 1181 HOH TIP . H 4 HOH B 87 1182 1182 HOH TIP . H 4 HOH B 88 1185 1185 HOH TIP . H 4 HOH B 89 1186 1186 HOH TIP . H 4 HOH B 90 1187 1187 HOH TIP . H 4 HOH B 91 1189 1189 HOH TIP . H 4 HOH B 92 1193 1193 HOH TIP . H 4 HOH B 93 1196 1196 HOH TIP . H 4 HOH B 94 1197 1197 HOH TIP . H 4 HOH B 95 1199 1199 HOH TIP . H 4 HOH B 96 1203 1203 HOH TIP . H 4 HOH B 97 1204 1204 HOH TIP . H 4 HOH B 98 1205 1205 HOH TIP . H 4 HOH B 99 1206 1206 HOH TIP . H 4 HOH B 100 1208 1208 HOH TIP . H 4 HOH B 101 1209 1209 HOH TIP . H 4 HOH B 102 1210 1210 HOH TIP . H 4 HOH B 103 1211 1211 HOH TIP . H 4 HOH B 104 1214 1214 HOH TIP . H 4 HOH B 105 1218 1218 HOH TIP . H 4 HOH B 106 1220 1220 HOH TIP . H 4 HOH B 107 1221 1221 HOH TIP . H 4 HOH B 108 1223 1223 HOH TIP . H 4 HOH B 109 1226 1226 HOH TIP . H 4 HOH B 110 1227 1227 HOH TIP . H 4 HOH B 111 1229 1229 HOH TIP . H 4 HOH B 112 1230 1230 HOH TIP . H 4 HOH B 113 1231 1231 HOH TIP . H 4 HOH B 114 1232 1232 HOH TIP . H 4 HOH B 115 1233 1233 HOH TIP . H 4 HOH B 116 1234 1234 HOH TIP . H 4 HOH B 117 1236 1236 HOH TIP . H 4 HOH B 118 1239 1239 HOH TIP . H 4 HOH B 119 1240 1240 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.026 _atom_site.Cartn_y -60.18 _atom_site.Cartn_z -60.511 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2701 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #