data_1DHG # _model_server_result.job_id sNv6oK0yepHS2IRO7fnK8A _model_server_result.datetime_utc '2024-12-26 13:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":37}' # _entry.id 1DHG # _exptl.entry_id 1DHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DHG _cell.length_a 27.9 _cell.length_b 27.9 _cell.length_c 130.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DHG _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 9 A CYS 9 1_555 C HG HG . A HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc2 A SG CYS 12 A CYS 12 1_555 C HG HG . A HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A SG CYS 28 A CYS 28 1_555 C HG HG . A HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 A SG CYS 29 A CYS 29 1_555 C HG HG . A HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 B SG CYS 9 B CYS 9 1_555 D HG HG . B HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc6 B SG CYS 12 B CYS 12 1_555 D HG HG . B HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc7 B SG CYS 28 B CYS 28 1_555 D HG HG . B HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc8 B SG CYS 29 B CYS 29 1_555 D HG HG . B HG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DHG _atom_sites.fract_transf_matrix[1][1] 0.035842 _atom_sites.fract_transf_matrix[1][2] 0.020693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.041387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HG A 1 37 37 HG HG . D 2 HG B 1 37 37 HG HG . E 3 HOH A 1 38 2 HOH HOH . E 3 HOH A 2 39 6 HOH HOH . E 3 HOH A 3 40 7 HOH HOH . E 3 HOH A 4 41 8 HOH HOH . E 3 HOH A 5 42 10 HOH HOH . E 3 HOH A 6 43 11 HOH HOH . F 3 HOH B 1 38 1 HOH HOH . F 3 HOH B 2 39 3 HOH HOH . F 3 HOH B 3 40 4 HOH HOH . F 3 HOH B 4 41 5 HOH HOH . F 3 HOH B 5 42 9 HOH HOH . F 3 HOH B 6 43 12 HOH HOH . F 3 HOH B 7 44 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.141 _atom_site.Cartn_y -1.064 _atom_site.Cartn_z 25.024 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 37 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #