data_1DHR # _model_server_result.job_id nCKx1PHki5h1yhDnUfUtNA _model_server_result.datetime_utc '2025-02-13 13:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":241}' # _entry.id 1DHR # _exptl.entry_id 1DHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DHR _cell.length_a 50.1 _cell.length_b 139.13 _cell.length_c 64.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 50.1 0 32.465 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1DHR _atom_sites.fract_transf_matrix[1][1] 0.01996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 241 241 NAD NAD . C 3 HOH A 1 242 242 HOH HOH . C 3 HOH A 2 243 243 HOH HOH . C 3 HOH A 3 244 244 HOH HOH . C 3 HOH A 4 245 245 HOH HOH . C 3 HOH A 5 246 246 HOH HOH . C 3 HOH A 6 247 247 HOH HOH . C 3 HOH A 7 248 248 HOH HOH . C 3 HOH A 8 249 249 HOH HOH . C 3 HOH A 9 250 250 HOH HOH . C 3 HOH A 10 251 251 HOH HOH . C 3 HOH A 11 252 252 HOH HOH . C 3 HOH A 12 253 253 HOH HOH . C 3 HOH A 13 254 254 HOH HOH . C 3 HOH A 14 255 255 HOH HOH . C 3 HOH A 15 256 256 HOH HOH . C 3 HOH A 16 257 257 HOH HOH . C 3 HOH A 17 258 258 HOH HOH . C 3 HOH A 18 259 259 HOH HOH . C 3 HOH A 19 260 260 HOH HOH . C 3 HOH A 20 261 261 HOH HOH . C 3 HOH A 21 262 262 HOH HOH . C 3 HOH A 22 263 263 HOH HOH . C 3 HOH A 23 264 264 HOH HOH . C 3 HOH A 24 265 265 HOH HOH . C 3 HOH A 25 266 266 HOH HOH . C 3 HOH A 26 267 267 HOH HOH . C 3 HOH A 27 268 268 HOH HOH . C 3 HOH A 28 269 269 HOH HOH . C 3 HOH A 29 270 270 HOH HOH . C 3 HOH A 30 271 271 HOH HOH . C 3 HOH A 31 272 272 HOH HOH . C 3 HOH A 32 273 273 HOH HOH . C 3 HOH A 33 274 274 HOH HOH . C 3 HOH A 34 275 275 HOH HOH . C 3 HOH A 35 276 276 HOH HOH . C 3 HOH A 36 277 277 HOH HOH . C 3 HOH A 37 278 278 HOH HOH . C 3 HOH A 38 279 279 HOH HOH . C 3 HOH A 39 280 280 HOH HOH . C 3 HOH A 40 281 281 HOH HOH . C 3 HOH A 41 282 282 HOH HOH . C 3 HOH A 42 283 283 HOH HOH . C 3 HOH A 43 284 284 HOH HOH . C 3 HOH A 44 285 285 HOH HOH . C 3 HOH A 45 286 286 HOH HOH . C 3 HOH A 46 287 287 HOH HOH . C 3 HOH A 47 288 288 HOH HOH . C 3 HOH A 48 289 289 HOH HOH . C 3 HOH A 49 290 290 HOH HOH . C 3 HOH A 50 291 291 HOH HOH . C 3 HOH A 51 292 292 HOH HOH . C 3 HOH A 52 293 293 HOH HOH . C 3 HOH A 53 294 294 HOH HOH . C 3 HOH A 54 295 295 HOH HOH . C 3 HOH A 55 296 296 HOH HOH . C 3 HOH A 56 297 297 HOH HOH . C 3 HOH A 57 298 298 HOH HOH . C 3 HOH A 58 299 299 HOH HOH . C 3 HOH A 59 300 300 HOH HOH . C 3 HOH A 60 301 301 HOH HOH . C 3 HOH A 61 302 302 HOH HOH . C 3 HOH A 62 303 303 HOH HOH . C 3 HOH A 63 304 304 HOH HOH . C 3 HOH A 64 305 305 HOH HOH . C 3 HOH A 65 306 306 HOH HOH . C 3 HOH A 66 307 307 HOH HOH . C 3 HOH A 67 308 308 HOH HOH . C 3 HOH A 68 309 309 HOH HOH . C 3 HOH A 69 310 310 HOH HOH . C 3 HOH A 70 311 311 HOH HOH . C 3 HOH A 71 312 312 HOH HOH . C 3 HOH A 72 313 313 HOH HOH . C 3 HOH A 73 314 314 HOH HOH . C 3 HOH A 74 315 315 HOH HOH . C 3 HOH A 75 316 316 HOH HOH . C 3 HOH A 76 317 317 HOH HOH . C 3 HOH A 77 318 318 HOH HOH . C 3 HOH A 78 319 319 HOH HOH . C 3 HOH A 79 320 320 HOH HOH . C 3 HOH A 80 321 321 HOH HOH . C 3 HOH A 81 322 322 HOH HOH . C 3 HOH A 82 323 323 HOH HOH . C 3 HOH A 83 324 324 HOH HOH . C 3 HOH A 84 325 325 HOH HOH . C 3 HOH A 85 326 326 HOH HOH . C 3 HOH A 86 327 327 HOH HOH . C 3 HOH A 87 328 328 HOH HOH . C 3 HOH A 88 329 329 HOH HOH . C 3 HOH A 89 330 330 HOH HOH . C 3 HOH A 90 331 331 HOH HOH . C 3 HOH A 91 332 332 HOH HOH . C 3 HOH A 92 333 333 HOH HOH . C 3 HOH A 93 334 334 HOH HOH . C 3 HOH A 94 335 335 HOH HOH . C 3 HOH A 95 336 336 HOH HOH . C 3 HOH A 96 337 337 HOH HOH . C 3 HOH A 97 338 338 HOH HOH . C 3 HOH A 98 339 339 HOH HOH . C 3 HOH A 99 340 340 HOH HOH . C 3 HOH A 100 341 341 HOH HOH . C 3 HOH A 101 342 342 HOH HOH . C 3 HOH A 102 343 343 HOH HOH . C 3 HOH A 103 344 344 HOH HOH . C 3 HOH A 104 345 345 HOH HOH . C 3 HOH A 105 346 346 HOH HOH . C 3 HOH A 106 347 347 HOH HOH . C 3 HOH A 107 348 348 HOH HOH . C 3 HOH A 108 349 349 HOH HOH . C 3 HOH A 109 350 350 HOH HOH . C 3 HOH A 110 351 351 HOH HOH . C 3 HOH A 111 352 352 HOH HOH . C 3 HOH A 112 353 353 HOH HOH . C 3 HOH A 113 354 354 HOH HOH . C 3 HOH A 114 355 355 HOH HOH . C 3 HOH A 115 356 356 HOH HOH . C 3 HOH A 116 357 357 HOH HOH . C 3 HOH A 117 358 358 HOH HOH . C 3 HOH A 118 359 359 HOH HOH . C 3 HOH A 119 360 360 HOH HOH . C 3 HOH A 120 361 361 HOH HOH . C 3 HOH A 121 362 362 HOH HOH . C 3 HOH A 122 363 363 HOH HOH . C 3 HOH A 123 364 364 HOH HOH . C 3 HOH A 124 365 365 HOH HOH . C 3 HOH A 125 366 366 HOH HOH . C 3 HOH A 126 367 367 HOH HOH . C 3 HOH A 127 368 368 HOH HOH . C 3 HOH A 128 369 369 HOH HOH . C 3 HOH A 129 370 370 HOH HOH . C 3 HOH A 130 371 371 HOH HOH . C 3 HOH A 131 372 372 HOH HOH . C 3 HOH A 132 373 373 HOH HOH . C 3 HOH A 133 374 374 HOH HOH . C 3 HOH A 134 375 375 HOH HOH . C 3 HOH A 135 376 376 HOH HOH . C 3 HOH A 136 377 377 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 29.171 45.328 34.354 1 28.41 ? PA NAD 241 A 1 HETATM 2 O O1A NAD . . . B 2 30.168 44.74 33.392 1 27.47 ? O1A NAD 241 A 1 HETATM 3 O O2A NAD . . . B 2 29.805 45.393 35.73 1 24.46 ? O2A NAD 241 A 1 HETATM 4 O O5B NAD . . . B 2 27.686 44.654 34.328 1 30.54 ? O5B NAD 241 A 1 HETATM 5 C C5B NAD . . . B 2 27.036 44.316 33.06 1 27.68 ? C5B NAD 241 A 1 HETATM 6 C C4B NAD . . . B 2 26.183 43.105 33.169 1 26.46 ? C4B NAD 241 A 1 HETATM 7 O O4B NAD . . . B 2 25.691 42.889 32.141 1 26.73 ? O4B NAD 241 A 1 HETATM 8 C C3B NAD . . . B 2 26.902 41.83 33.703 1 23.74 ? C3B NAD 241 A 1 HETATM 9 O O3B NAD . . . B 2 26.171 41.301 34.852 1 19.9 ? O3B NAD 241 A 1 HETATM 10 C C2B NAD . . . B 2 26.622 40.878 32.522 1 24.89 ? C2B NAD 241 A 1 HETATM 11 O O2B NAD . . . B 2 26.544 39.576 32.811 1 23.49 ? O2B NAD 241 A 1 HETATM 12 C C1B NAD . . . B 2 25.367 41.471 31.99 1 26.55 ? C1B NAD 241 A 1 HETATM 13 N N9A NAD . . . B 2 25.186 41.082 30.57 1 25.5 ? N9A NAD 241 A 1 HETATM 14 C C8A NAD . . . B 2 26.133 41.173 29.615 1 25.31 ? C8A NAD 241 A 1 HETATM 15 N N7A NAD . . . B 2 25.655 40.705 28.464 1 26.47 ? N7A NAD 241 A 1 HETATM 16 C C5A NAD . . . B 2 24.314 40.285 28.852 1 23.96 ? C5A NAD 241 A 1 HETATM 17 C C6A NAD . . . B 2 23.1 39.622 28.117 1 22.93 ? C6A NAD 241 A 1 HETATM 18 N N6A NAD . . . B 2 23.133 39.281 26.8 1 22.39 ? N6A NAD 241 A 1 HETATM 19 N N1A NAD . . . B 2 21.974 39.381 28.808 1 22.17 ? N1A NAD 241 A 1 HETATM 20 C C2A NAD . . . B 2 22.038 39.75 30.101 1 23.63 ? C2A NAD 241 A 1 HETATM 21 N N3A NAD . . . B 2 22.992 40.32 30.848 1 22.68 ? N3A NAD 241 A 1 HETATM 22 C C4A NAD . . . B 2 24.108 40.549 30.132 1 23.49 ? C4A NAD 241 A 1 HETATM 23 O O3 NAD . . . B 2 28.83 46.818 33.964 1 31.64 ? O3 NAD 241 A 1 HETATM 24 P PN NAD . . . B 2 28.672 48.103 34.91 1 33.26 ? PN NAD 241 A 1 HETATM 25 O O1N NAD . . . B 2 29.913 48.658 35.392 1 33.1 ? O1N NAD 241 A 1 HETATM 26 O O2N NAD . . . B 2 27.701 47.865 35.973 1 25.38 ? O2N NAD 241 A 1 HETATM 27 O O5D NAD . . . B 2 28.028 49.165 33.838 1 33.96 ? O5D NAD 241 A 1 HETATM 28 C C5D NAD . . . B 2 26.588 49.423 33.745 1 34.19 ? C5D NAD 241 A 1 HETATM 29 C C4D NAD . . . B 2 26.32 49.922 32.319 1 34.28 ? C4D NAD 241 A 1 HETATM 30 O O4D NAD . . . B 2 27.059 51.181 32.212 1 33.39 ? O4D NAD 241 A 1 HETATM 31 C C3D NAD . . . B 2 26.998 48.988 31.188 1 34.91 ? C3D NAD 241 A 1 HETATM 32 O O3D NAD . . . B 2 26.32 49.19 29.926 1 35.34 ? O3D NAD 241 A 1 HETATM 33 C C2D NAD . . . B 2 28.433 49.557 31.153 1 34.08 ? C2D NAD 241 A 1 HETATM 34 O O2D NAD . . . B 2 28.988 49.364 29.837 1 32.61 ? O2D NAD 241 A 1 HETATM 35 C C1D NAD . . . B 2 28.183 51.033 31.365 1 32.88 ? C1D NAD 241 A 1 HETATM 36 N N1N NAD . . . B 2 29.48 51.808 31.513 1 32.37 ? N1N NAD 241 A 1 HETATM 37 C C2N NAD . . . B 2 30.434 51.491 32.479 1 31.23 ? C2N NAD 241 A 1 HETATM 38 C C3N NAD . . . B 2 31.589 52.149 32.612 1 30.2 ? C3N NAD 241 A 1 HETATM 39 C C7N NAD . . . B 2 32.462 51.661 33.683 1 29.6 ? C7N NAD 241 A 1 HETATM 40 O O7N NAD . . . B 2 33.578 52.294 33.846 1 29.15 ? O7N NAD 241 A 1 HETATM 41 N N7N NAD . . . B 2 32.138 50.621 34.473 1 27.5 ? N7N NAD 241 A 1 HETATM 42 C C4N NAD . . . B 2 31.975 53.371 31.72 1 27.46 ? C4N NAD 241 A 1 HETATM 43 C C5N NAD . . . B 2 30.848 53.624 30.735 1 29.45 ? C5N NAD 241 A 1 HETATM 44 C C6N NAD . . . B 2 29.736 52.899 30.651 1 30.97 ? C6N NAD 241 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #