data_1DI4
#
_model_server_result.job_id            8uLHKXOUvV0RmELhHp8STg 
_model_server_result.datetime_utc      '2025-07-31 18:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1di4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    1DI4 
#
_exptl.entry_id    1DI4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DI4 
_cell.length_a            45.8 
_cell.length_b            59.27 
_cell.length_c            38.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DI4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 126 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 114 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf3 A SG CYS 63 A CYS 65 1_555 A SG CYS 79 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 75 A CYS 77 1_555 A SG CYS 93 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc1 A O SER 59 A SER 61 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc2 A O CYS 63 A CYS 65 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc3 A O VAL 72 A VAL 74 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DI4 
_atom_sites.fract_transf_matrix[1][1]    0.021834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 501 NA NA . 
C 3 HOH A 1 131 131 HOH TIP . 
C 3 HOH A 2 132 132 HOH TIP . 
C 3 HOH A 3 133 133 HOH TIP . 
C 3 HOH A 4 134 134 HOH TIP . 
C 3 HOH A 5 135 135 HOH TIP . 
C 3 HOH A 6 136 136 HOH TIP . 
C 3 HOH A 7 137 137 HOH TIP . 
C 3 HOH A 8 138 138 HOH TIP . 
C 3 HOH A 9 139 139 HOH TIP . 
C 3 HOH A 10 140 140 HOH TIP . 
C 3 HOH A 11 141 141 HOH TIP . 
C 3 HOH A 12 142 142 HOH TIP . 
C 3 HOH A 13 143 143 HOH TIP . 
C 3 HOH A 14 144 144 HOH TIP . 
C 3 HOH A 15 146 146 HOH TIP . 
C 3 HOH A 16 147 147 HOH TIP . 
C 3 HOH A 17 148 148 HOH TIP . 
C 3 HOH A 18 150 150 HOH TIP . 
C 3 HOH A 19 151 151 HOH TIP . 
C 3 HOH A 20 152 152 HOH TIP . 
C 3 HOH A 21 153 153 HOH TIP . 
C 3 HOH A 22 154 154 HOH TIP . 
C 3 HOH A 23 155 155 HOH TIP . 
C 3 HOH A 24 156 156 HOH TIP . 
C 3 HOH A 25 157 157 HOH TIP . 
C 3 HOH A 26 158 158 HOH TIP . 
C 3 HOH A 27 159 159 HOH TIP . 
C 3 HOH A 28 160 160 HOH TIP . 
C 3 HOH A 29 162 162 HOH TIP . 
C 3 HOH A 30 163 163 HOH TIP . 
C 3 HOH A 31 164 164 HOH TIP . 
C 3 HOH A 32 165 165 HOH TIP . 
C 3 HOH A 33 166 166 HOH TIP . 
C 3 HOH A 34 167 167 HOH TIP . 
C 3 HOH A 35 169 169 HOH TIP . 
C 3 HOH A 36 170 170 HOH TIP . 
C 3 HOH A 37 171 171 HOH TIP . 
C 3 HOH A 38 172 172 HOH TIP . 
C 3 HOH A 39 173 173 HOH TIP . 
C 3 HOH A 40 174 174 HOH TIP . 
C 3 HOH A 41 175 175 HOH TIP . 
C 3 HOH A 42 176 176 HOH TIP . 
C 3 HOH A 43 177 177 HOH TIP . 
C 3 HOH A 44 178 178 HOH TIP . 
C 3 HOH A 45 179 179 HOH TIP . 
C 3 HOH A 46 180 180 HOH TIP . 
C 3 HOH A 47 181 181 HOH TIP . 
C 3 HOH A 48 182 182 HOH TIP . 
C 3 HOH A 49 183 183 HOH TIP . 
C 3 HOH A 50 184 184 HOH TIP . 
C 3 HOH A 51 185 185 HOH TIP . 
C 3 HOH A 52 186 186 HOH TIP . 
C 3 HOH A 53 187 187 HOH TIP . 
C 3 HOH A 54 188 188 HOH TIP . 
C 3 HOH A 55 189 189 HOH TIP . 
C 3 HOH A 56 190 190 HOH TIP . 
C 3 HOH A 57 191 191 HOH TIP . 
C 3 HOH A 58 192 192 HOH TIP . 
C 3 HOH A 59 193 193 HOH TIP . 
C 3 HOH A 60 194 194 HOH TIP . 
C 3 HOH A 61 195 195 HOH TIP . 
C 3 HOH A 62 196 196 HOH TIP . 
C 3 HOH A 63 197 197 HOH TIP . 
C 3 HOH A 64 198 198 HOH TIP . 
C 3 HOH A 65 199 199 HOH TIP . 
C 3 HOH A 66 200 200 HOH TIP . 
C 3 HOH A 67 201 201 HOH TIP . 
C 3 HOH A 68 202 202 HOH TIP . 
C 3 HOH A 69 203 203 HOH TIP . 
C 3 HOH A 70 204 204 HOH TIP . 
C 3 HOH A 71 205 205 HOH TIP . 
C 3 HOH A 72 206 206 HOH TIP . 
C 3 HOH A 73 207 207 HOH TIP . 
C 3 HOH A 74 208 208 HOH TIP . 
C 3 HOH A 75 209 209 HOH TIP . 
C 3 HOH A 76 210 210 HOH TIP . 
C 3 HOH A 77 211 211 HOH TIP . 
C 3 HOH A 78 212 212 HOH TIP . 
C 3 HOH A 79 213 213 HOH TIP . 
C 3 HOH A 80 214 214 HOH TIP . 
C 3 HOH A 81 215 215 HOH TIP . 
C 3 HOH A 82 216 216 HOH TIP . 
C 3 HOH A 83 217 217 HOH TIP . 
C 3 HOH A 84 218 218 HOH TIP . 
C 3 HOH A 85 219 219 HOH TIP . 
C 3 HOH A 86 220 220 HOH TIP . 
C 3 HOH A 87 221 221 HOH TIP . 
C 3 HOH A 88 222 222 HOH TIP . 
C 3 HOH A 89 223 223 HOH TIP . 
C 3 HOH A 90 224 224 HOH TIP . 
C 3 HOH A 91 225 225 HOH TIP . 
C 3 HOH A 92 226 226 HOH TIP . 
C 3 HOH A 93 227 227 HOH TIP . 
C 3 HOH A 94 228 228 HOH TIP . 
C 3 HOH A 95 229 229 HOH TIP . 
C 3 HOH A 96 230 230 HOH TIP . 
C 3 HOH A 97 231 231 HOH TIP . 
C 3 HOH A 98 232 232 HOH TIP . 
C 3 HOH A 99 233 233 HOH TIP . 
C 3 HOH A 100 234 234 HOH TIP . 
C 3 HOH A 101 235 235 HOH TIP . 
C 3 HOH A 102 236 236 HOH TIP . 
C 3 HOH A 103 237 237 HOH TIP . 
C 3 HOH A 104 238 238 HOH TIP . 
C 3 HOH A 105 239 239 HOH TIP . 
C 3 HOH A 106 240 240 HOH TIP . 
C 3 HOH A 107 241 241 HOH TIP . 
C 3 HOH A 108 242 242 HOH TIP . 
C 3 HOH A 109 243 243 HOH TIP . 
C 3 HOH A 110 244 244 HOH TIP . 
C 3 HOH A 111 245 245 HOH TIP . 
C 3 HOH A 112 246 246 HOH TIP . 
C 3 HOH A 113 248 248 HOH TIP . 
C 3 HOH A 114 249 249 HOH TIP . 
C 3 HOH A 115 250 250 HOH TIP . 
C 3 HOH A 116 251 251 HOH TIP . 
C 3 HOH A 117 252 252 HOH TIP . 
C 3 HOH A 118 253 253 HOH TIP . 
C 3 HOH A 119 254 254 HOH TIP . 
C 3 HOH A 120 256 256 HOH TIP . 
C 3 HOH A 121 257 257 HOH TIP . 
C 3 HOH A 122 258 258 HOH TIP . 
C 3 HOH A 123 259 259 HOH TIP . 
C 3 HOH A 124 260 260 HOH TIP . 
C 3 HOH A 125 261 261 HOH TIP . 
C 3 HOH A 126 262 262 HOH TIP . 
C 3 HOH A 127 263 263 HOH TIP . 
C 3 HOH A 128 264 264 HOH TIP . 
C 3 HOH A 129 265 265 HOH TIP . 
C 3 HOH A 130 266 266 HOH TIP . 
C 3 HOH A 131 268 268 HOH TIP . 
C 3 HOH A 132 270 270 HOH TIP . 
C 3 HOH A 133 271 271 HOH TIP . 
C 3 HOH A 134 272 272 HOH TIP . 
C 3 HOH A 135 273 273 HOH TIP . 
C 3 HOH A 136 274 274 HOH TIP . 
C 3 HOH A 137 276 276 HOH TIP . 
C 3 HOH A 138 277 277 HOH TIP . 
C 3 HOH A 139 278 278 HOH TIP . 
C 3 HOH A 140 279 279 HOH TIP . 
C 3 HOH A 141 280 280 HOH TIP . 
C 3 HOH A 142 281 281 HOH TIP . 
C 3 HOH A 143 282 282 HOH TIP . 
C 3 HOH A 144 283 283 HOH TIP . 
C 3 HOH A 145 284 284 HOH TIP . 
C 3 HOH A 146 285 285 HOH TIP . 
C 3 HOH A 147 286 286 HOH TIP . 
C 3 HOH A 148 287 287 HOH TIP . 
C 3 HOH A 149 288 288 HOH TIP . 
C 3 HOH A 150 289 289 HOH TIP . 
C 3 HOH A 151 291 291 HOH TIP . 
C 3 HOH A 152 292 292 HOH TIP . 
C 3 HOH A 153 293 293 HOH TIP . 
C 3 HOH A 154 294 294 HOH TIP . 
C 3 HOH A 155 295 295 HOH TIP . 
C 3 HOH A 156 296 296 HOH TIP . 
C 3 HOH A 157 297 297 HOH TIP . 
C 3 HOH A 158 298 298 HOH TIP . 
C 3 HOH A 159 299 299 HOH TIP . 
C 3 HOH A 160 300 300 HOH TIP . 
C 3 HOH A 161 301 301 HOH TIP . 
C 3 HOH A 162 302 302 HOH TIP . 
C 3 HOH A 163 303 303 HOH TIP . 
C 3 HOH A 164 304 304 HOH TIP . 
C 3 HOH A 165 305 305 HOH TIP . 
C 3 HOH A 166 306 306 HOH TIP . 
C 3 HOH A 167 307 307 HOH TIP . 
C 3 HOH A 168 308 308 HOH TIP . 
C 3 HOH A 169 309 309 HOH TIP . 
C 3 HOH A 170 310 310 HOH TIP . 
C 3 HOH A 171 311 311 HOH TIP . 
C 3 HOH A 172 312 312 HOH TIP . 
C 3 HOH A 173 313 313 HOH TIP . 
C 3 HOH A 174 314 314 HOH TIP . 
C 3 HOH A 175 315 315 HOH TIP . 
C 3 HOH A 176 316 316 HOH TIP . 
C 3 HOH A 177 317 317 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               10.939 
_atom_site.Cartn_y               -2.846 
_atom_site.Cartn_z               10.996 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#