data_1DIA # _model_server_result.job_id Q6bUo4r1pNM7M3rRHJLjzw _model_server_result.datetime_utc '2024-11-14 18:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 1DIA # _exptl.entry_id 1DIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[[2-AMINO-5,6,7,8-TETRAHYDRO-4-HYDROXY-PYRIDO[2,3-D]PYRIMIDIN-6-YL]-ETHYL]-PHENYL]-CARBONYL-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DIA _cell.length_a 67.871 _cell.length_b 136.396 _cell.length_c 61.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id L24 _chem_comp.mon_nstd_flag . _chem_comp.name '[[[2-AMINO-5,6,7,8-TETRAHYDRO-4-HYDROXY-PYRIDO[2,3-D]PYRIMIDIN-6-YL]-ETHYL]-PHENYL]-CARBONYL-GLUTAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LY249543 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 L24 sing 173 n n N2A HN21 L24 sing 174 n n N2A HN22 L24 sing 175 n n N1 C2 L24 doub 176 n y N1 C6 L24 sing 177 n y C2 N3 L24 sing 178 n y N3 C4 L24 doub 179 n y C4 O4A L24 sing 180 n n C4 C5 L24 sing 181 n y O4A HO4 L24 sing 182 n n C5 C6 L24 doub 183 n y C5 C10 L24 sing 184 n n C6 N7 L24 sing 185 n n N7 C8 L24 sing 186 n n N7 HN7 L24 sing 187 n n C8 C9 L24 sing 188 n n C8 H81 L24 sing 189 n n C8 H82 L24 sing 190 n n C9 C10 L24 sing 191 n n C9 C11 L24 sing 192 n n C9 H9 L24 sing 193 n n C10 H101 L24 sing 194 n n C10 H102 L24 sing 195 n n C11 C12 L24 sing 196 n n C11 H111 L24 sing 197 n n C11 H112 L24 sing 198 n n C12 C1B L24 sing 199 n n C12 H121 L24 sing 200 n n C12 H122 L24 sing 201 n n C1B C2B L24 doub 202 n y C1B C6B L24 sing 203 n y C2B C3B L24 sing 204 n y C2B H2B L24 sing 205 n n C3B C4B L24 doub 206 n y C3B H3B L24 sing 207 n n C4B C5B L24 sing 208 n y C4B C7B L24 sing 209 n n C5B C6B L24 doub 210 n y C5B H5B L24 sing 211 n n C6B H6B L24 sing 212 n n C7B O7B L24 doub 213 n n C7B N L24 sing 214 n n N CA L24 sing 215 n n N HN L24 sing 216 n n CA CB L24 sing 217 n n CA C L24 sing 218 n n CA HA L24 sing 219 n n CB CG L24 sing 220 n n CB HB1 L24 sing 221 n n CB HB2 L24 sing 222 n n CG CD L24 sing 223 n n CG HG1 L24 sing 224 n n CG HG2 L24 sing 225 n n CD OE1 L24 doub 226 n n CD OE2 L24 sing 227 n n OE2 HE2 L24 sing 228 n n C O L24 doub 229 n n C OXT L24 sing 230 n n OXT HXT L24 sing 231 n n # _atom_sites.entry_id 1DIA _atom_sites.fract_transf_matrix[1][1] 0.014734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 2001 2001 NAP NAP . D 3 L24 A 1 3001 3001 L24 L24 . E 2 NAP B 1 2002 2002 NAP NAP . F 4 HOH A 1 4001 4001 HOH HOH . F 4 HOH A 2 4002 4002 HOH HOH . F 4 HOH A 3 4003 4003 HOH HOH . F 4 HOH A 4 4004 4004 HOH HOH . F 4 HOH A 5 4005 4005 HOH HOH . F 4 HOH A 6 4006 4006 HOH HOH . F 4 HOH A 7 4007 4007 HOH HOH . F 4 HOH A 8 4008 4008 HOH HOH . F 4 HOH A 9 4010 4010 HOH HOH . F 4 HOH A 10 4011 4011 HOH HOH . F 4 HOH A 11 4012 4012 HOH HOH . F 4 HOH A 12 4014 4014 HOH HOH . F 4 HOH A 13 4015 4015 HOH HOH . F 4 HOH A 14 4020 4020 HOH HOH . F 4 HOH A 15 4021 4021 HOH HOH . F 4 HOH A 16 4022 4022 HOH HOH . F 4 HOH A 17 4023 4023 HOH HOH . F 4 HOH A 18 4024 4024 HOH HOH . F 4 HOH A 19 4025 4025 HOH HOH . F 4 HOH A 20 4026 4026 HOH HOH . F 4 HOH A 21 4029 4029 HOH HOH . F 4 HOH A 22 4030 4030 HOH HOH . F 4 HOH A 23 4031 4031 HOH HOH . F 4 HOH A 24 4032 4032 HOH HOH . F 4 HOH A 25 4034 4034 HOH HOH . F 4 HOH A 26 4036 4036 HOH HOH . F 4 HOH A 27 4037 4037 HOH HOH . F 4 HOH A 28 4038 4038 HOH HOH . F 4 HOH A 29 4039 4039 HOH HOH . F 4 HOH A 30 4040 4040 HOH HOH . F 4 HOH A 31 4062 4062 HOH HOH . F 4 HOH A 32 4063 4063 HOH HOH . F 4 HOH A 33 4064 4064 HOH HOH . F 4 HOH A 34 4065 4065 HOH HOH . F 4 HOH A 35 4066 4066 HOH HOH . F 4 HOH A 36 4067 4067 HOH HOH . F 4 HOH A 37 4068 4068 HOH HOH . F 4 HOH A 38 4069 4069 HOH HOH . F 4 HOH A 39 4070 4070 HOH HOH . F 4 HOH A 40 4071 4071 HOH HOH . F 4 HOH A 41 4072 4072 HOH HOH . F 4 HOH A 42 4073 4073 HOH HOH . F 4 HOH A 43 4074 4074 HOH HOH . F 4 HOH A 44 4075 4075 HOH HOH . F 4 HOH A 45 4076 4076 HOH HOH . F 4 HOH A 46 4077 4077 HOH HOH . F 4 HOH A 47 4078 4078 HOH HOH . F 4 HOH A 48 4079 4079 HOH HOH . F 4 HOH A 49 4080 4080 HOH HOH . F 4 HOH A 50 4081 4081 HOH HOH . F 4 HOH A 51 4086 4086 HOH HOH . F 4 HOH A 52 4087 4087 HOH HOH . F 4 HOH A 53 4088 4088 HOH HOH . F 4 HOH A 54 4089 4089 HOH HOH . F 4 HOH A 55 4090 4090 HOH HOH . F 4 HOH A 56 4091 4091 HOH HOH . F 4 HOH A 57 4092 4092 HOH HOH . F 4 HOH A 58 4093 4093 HOH HOH . F 4 HOH A 59 4120 4120 HOH HOH . F 4 HOH A 60 4131 4131 HOH HOH . F 4 HOH A 61 4132 4132 HOH HOH . F 4 HOH A 62 4133 4133 HOH HOH . F 4 HOH A 63 4136 4136 HOH HOH . F 4 HOH A 64 4137 4137 HOH HOH . F 4 HOH A 65 4138 4138 HOH HOH . F 4 HOH A 66 4140 4140 HOH HOH . F 4 HOH A 67 4141 4141 HOH HOH . F 4 HOH A 68 4142 4142 HOH HOH . F 4 HOH A 69 4143 4143 HOH HOH . F 4 HOH A 70 4144 4144 HOH HOH . F 4 HOH A 71 4145 4145 HOH HOH . F 4 HOH A 72 4146 4146 HOH HOH . F 4 HOH A 73 4147 4147 HOH HOH . F 4 HOH A 74 4148 4148 HOH HOH . F 4 HOH A 75 4149 4149 HOH HOH . F 4 HOH A 76 4150 4150 HOH HOH . F 4 HOH A 77 4151 4151 HOH HOH . F 4 HOH A 78 4152 4152 HOH HOH . F 4 HOH A 79 4153 4153 HOH HOH . F 4 HOH A 80 4154 4154 HOH HOH . F 4 HOH A 81 4155 4155 HOH HOH . F 4 HOH A 82 4156 4156 HOH HOH . F 4 HOH A 83 4157 4157 HOH HOH . F 4 HOH A 84 4158 4158 HOH HOH . F 4 HOH A 85 4159 4159 HOH HOH . F 4 HOH A 86 4160 4160 HOH HOH . F 4 HOH A 87 4161 4161 HOH HOH . F 4 HOH A 88 4162 4162 HOH HOH . F 4 HOH A 89 4163 4163 HOH HOH . F 4 HOH A 90 4164 4164 HOH HOH . F 4 HOH A 91 4165 4165 HOH HOH . F 4 HOH A 92 4167 4167 HOH HOH . F 4 HOH A 93 4168 4168 HOH HOH . F 4 HOH A 94 4169 4169 HOH HOH . G 4 HOH B 1 4009 4009 HOH HOH . G 4 HOH B 2 4013 4013 HOH HOH . G 4 HOH B 3 4016 4016 HOH HOH . G 4 HOH B 4 4017 4017 HOH HOH . G 4 HOH B 5 4018 4018 HOH HOH . G 4 HOH B 6 4019 4019 HOH HOH . G 4 HOH B 7 4027 4027 HOH HOH . G 4 HOH B 8 4028 4028 HOH HOH . G 4 HOH B 9 4033 4033 HOH HOH . G 4 HOH B 10 4035 4035 HOH HOH . G 4 HOH B 11 4041 4041 HOH HOH . G 4 HOH B 12 4042 4042 HOH HOH . G 4 HOH B 13 4043 4043 HOH HOH . G 4 HOH B 14 4044 4044 HOH HOH . G 4 HOH B 15 4045 4045 HOH HOH . G 4 HOH B 16 4046 4046 HOH HOH . G 4 HOH B 17 4047 4047 HOH HOH . G 4 HOH B 18 4048 4048 HOH HOH . G 4 HOH B 19 4049 4049 HOH HOH . G 4 HOH B 20 4050 4050 HOH HOH . G 4 HOH B 21 4051 4051 HOH HOH . G 4 HOH B 22 4052 4052 HOH HOH . G 4 HOH B 23 4053 4053 HOH HOH . G 4 HOH B 24 4054 4054 HOH HOH . G 4 HOH B 25 4055 4055 HOH HOH . G 4 HOH B 26 4056 4056 HOH HOH . G 4 HOH B 27 4057 4057 HOH HOH . G 4 HOH B 28 4058 4058 HOH HOH . G 4 HOH B 29 4059 4059 HOH HOH . G 4 HOH B 30 4060 4060 HOH HOH . G 4 HOH B 31 4061 4061 HOH HOH . G 4 HOH B 32 4082 4082 HOH HOH . G 4 HOH B 33 4083 4083 HOH HOH . G 4 HOH B 34 4084 4084 HOH HOH . G 4 HOH B 35 4085 4085 HOH HOH . G 4 HOH B 36 4094 4094 HOH HOH . G 4 HOH B 37 4095 4095 HOH HOH . G 4 HOH B 38 4096 4096 HOH HOH . G 4 HOH B 39 4097 4097 HOH HOH . G 4 HOH B 40 4098 4098 HOH HOH . G 4 HOH B 41 4099 4099 HOH HOH . G 4 HOH B 42 4100 4100 HOH HOH . G 4 HOH B 43 4101 4101 HOH HOH . G 4 HOH B 44 4102 4102 HOH HOH . G 4 HOH B 45 4103 4103 HOH HOH . G 4 HOH B 46 4104 4104 HOH HOH . G 4 HOH B 47 4105 4105 HOH HOH . G 4 HOH B 48 4106 4106 HOH HOH . G 4 HOH B 49 4107 4107 HOH HOH . G 4 HOH B 50 4108 4108 HOH HOH . G 4 HOH B 51 4109 4109 HOH HOH . G 4 HOH B 52 4110 4110 HOH HOH . G 4 HOH B 53 4111 4111 HOH HOH . G 4 HOH B 54 4112 4112 HOH HOH . G 4 HOH B 55 4113 4113 HOH HOH . G 4 HOH B 56 4114 4114 HOH HOH . G 4 HOH B 57 4115 4115 HOH HOH . G 4 HOH B 58 4116 4116 HOH HOH . G 4 HOH B 59 4117 4117 HOH HOH . G 4 HOH B 60 4118 4118 HOH HOH . G 4 HOH B 61 4119 4119 HOH HOH . G 4 HOH B 62 4121 4121 HOH HOH . G 4 HOH B 63 4122 4122 HOH HOH . G 4 HOH B 64 4123 4123 HOH HOH . G 4 HOH B 65 4124 4124 HOH HOH . G 4 HOH B 66 4125 4125 HOH HOH . G 4 HOH B 67 4126 4126 HOH HOH . G 4 HOH B 68 4127 4127 HOH HOH . G 4 HOH B 69 4128 4128 HOH HOH . G 4 HOH B 70 4129 4129 HOH HOH . G 4 HOH B 71 4130 4130 HOH HOH . G 4 HOH B 72 4134 4134 HOH HOH . G 4 HOH B 73 4135 4135 HOH HOH . G 4 HOH B 74 4139 4139 HOH HOH . G 4 HOH B 75 4166 4166 HOH HOH . G 4 HOH B 76 4170 4170 HOH HOH . G 4 HOH B 77 4171 4171 HOH HOH . G 4 HOH B 78 4172 4172 HOH HOH . G 4 HOH B 79 4173 4173 HOH HOH . G 4 HOH B 80 4174 4174 HOH HOH . G 4 HOH B 81 4175 4175 HOH HOH . G 4 HOH B 82 4176 4176 HOH HOH . G 4 HOH B 83 4177 4177 HOH HOH . G 4 HOH B 84 4178 4178 HOH HOH . G 4 HOH B 85 4179 4179 HOH HOH . G 4 HOH B 86 4180 4180 HOH HOH . G 4 HOH B 87 4181 4181 HOH HOH . G 4 HOH B 88 4182 4182 HOH HOH . G 4 HOH B 89 4183 4183 HOH HOH . G 4 HOH B 90 4184 4184 HOH HOH . G 4 HOH B 91 4185 4185 HOH HOH . G 4 HOH B 92 4186 4186 HOH HOH . G 4 HOH B 93 4187 4187 HOH HOH . G 4 HOH B 94 4188 4188 HOH HOH . G 4 HOH B 95 4189 4189 HOH HOH . G 4 HOH B 96 4190 4190 HOH HOH . G 4 HOH B 97 4191 4191 HOH HOH . G 4 HOH B 98 4192 4192 HOH HOH . G 4 HOH B 99 4193 4193 HOH HOH . G 4 HOH B 100 4194 4194 HOH HOH . G 4 HOH B 101 4195 4195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A L24 . . . D 3 -3.653 50.768 19.04 0.3 9.9 ? N2A L24 3001 A 1 HETATM 2 N N1 L24 . . . D 3 -2.097 52.165 17.948 0.3 9.96 ? N1 L24 3001 A 1 HETATM 3 C C2 L24 . . . D 3 -2.942 51.906 19.029 0.3 9.9 ? C2 L24 3001 A 1 HETATM 4 N N3 L24 . . . D 3 -3.064 52.797 20.087 0.3 9.93 ? N3 L24 3001 A 1 HETATM 5 C C4 L24 . . . D 3 -2.371 53.946 20.115 0.3 10 ? C4 L24 3001 A 1 HETATM 6 O O4A L24 . . . D 3 -2.471 54.743 21.051 0.3 9.96 ? O4A L24 3001 A 1 HETATM 7 C C5 L24 . . . D 3 -1.443 54.231 18.937 0.3 10.05 ? C5 L24 3001 A 1 HETATM 8 C C6 L24 . . . D 3 -1.358 53.331 17.912 0.3 10 ? C6 L24 3001 A 1 HETATM 9 N N7 L24 . . . D 3 -0.541 53.582 16.835 0.3 10.1 ? N7 L24 3001 A 1 HETATM 10 C C8 L24 . . . D 3 0.213 54.729 16.645 0.3 10.15 ? C8 L24 3001 A 1 HETATM 11 C C9 L24 . . . D 3 0.629 55.366 17.963 0.3 10.31 ? C9 L24 3001 A 1 HETATM 12 C C10 L24 . . . D 3 -0.561 55.491 18.916 0.3 10.21 ? C10 L24 3001 A 1 HETATM 13 C C11 L24 . . . D 3 1.327 56.728 17.794 0.3 10.56 ? C11 L24 3001 A 1 HETATM 14 C C12 L24 . . . D 3 2.362 56.934 18.888 0.3 10.92 ? C12 L24 3001 A 1 HETATM 15 C C1B L24 . . . D 3 2.598 58.341 19.243 0.3 11.13 ? C1B L24 3001 A 1 HETATM 16 C C2B L24 . . . D 3 3.305 59.154 18.386 0.3 11.29 ? C2B L24 3001 A 1 HETATM 17 C C3B L24 . . . D 3 3.585 60.468 18.738 0.3 11.48 ? C3B L24 3001 A 1 HETATM 18 C C4B L24 . . . D 3 3.151 60.969 19.955 0.3 11.56 ? C4B L24 3001 A 1 HETATM 19 C C5B L24 . . . D 3 2.427 60.158 20.813 0.3 11.42 ? C5B L24 3001 A 1 HETATM 20 C C6B L24 . . . D 3 2.148 58.839 20.457 0.3 11.23 ? C6B L24 3001 A 1 HETATM 21 C C7B L24 . . . D 3 3.539 62.391 20.358 0.3 11.95 ? C7B L24 3001 A 1 HETATM 22 O O7B L24 . . . D 3 4.487 62.947 19.799 0.3 12.03 ? O7B L24 3001 A 1 HETATM 23 N N L24 . . . D 3 2.999 62.86 21.483 0.3 12.2 ? N L24 3001 A 1 HETATM 24 C CA L24 . . . D 3 3.367 64.163 22.053 0.3 12.39 ? CA L24 3001 A 1 HETATM 25 C CB L24 . . . D 3 2.116 65.043 22.22 0.3 12.7 ? CB L24 3001 A 1 HETATM 26 C CG L24 . . . D 3 1.375 65.347 20.914 0.3 13.06 ? CG L24 3001 A 1 HETATM 27 C CD L24 . . . D 3 0.131 66.192 21.133 0.3 13.25 ? CD L24 3001 A 1 HETATM 28 O OE1 L24 . . . D 3 -0.932 65.612 21.445 0.3 13.34 ? OE1 L24 3001 A 1 HETATM 29 O OE2 L24 . . . D 3 0.212 67.435 20.995 0.3 13.28 ? OE2 L24 3001 A 1 HETATM 30 C C L24 . . . D 3 4.068 64.012 23.406 0.3 12.35 ? C L24 3001 A 1 HETATM 31 O O L24 . . . D 3 3.749 63.037 24.123 0.3 12.37 ? O L24 3001 A 1 HETATM 32 O OXT L24 . . . D 3 4.924 64.866 23.734 0.3 12.27 ? OXT L24 3001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #