data_1DIH # _model_server_result.job_id 0EEYcxf-uJZcd9jsf-mEPA _model_server_result.datetime_utc '2024-11-08 14:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1DIH # _exptl.entry_id 1DIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DIH _cell.length_a 75.7 _cell.length_b 81.2 _cell.length_c 94.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 75.7 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 75.7 0 94.2 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 94.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1DIH _atom_sites.fract_transf_matrix[1][1] 0.01321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 301 301 NDP NDP . C 3 HOH A 1 403 403 HOH HOH . C 3 HOH A 2 404 404 HOH HOH . C 3 HOH A 3 405 405 HOH HOH . C 3 HOH A 4 406 406 HOH HOH . C 3 HOH A 5 408 408 HOH HOH . C 3 HOH A 6 409 409 HOH HOH . C 3 HOH A 7 410 410 HOH HOH . C 3 HOH A 8 411 411 HOH HOH . C 3 HOH A 9 412 412 HOH HOH . C 3 HOH A 10 414 414 HOH HOH . C 3 HOH A 11 415 415 HOH HOH . C 3 HOH A 12 416 416 HOH HOH . C 3 HOH A 13 417 417 HOH HOH . C 3 HOH A 14 419 419 HOH HOH . C 3 HOH A 15 420 420 HOH HOH . C 3 HOH A 16 421 421 HOH HOH . C 3 HOH A 17 422 422 HOH HOH . C 3 HOH A 18 423 423 HOH HOH . C 3 HOH A 19 426 426 HOH HOH . C 3 HOH A 20 427 427 HOH HOH . C 3 HOH A 21 428 428 HOH HOH . C 3 HOH A 22 430 430 HOH HOH . C 3 HOH A 23 431 431 HOH HOH . C 3 HOH A 24 433 433 HOH HOH . C 3 HOH A 25 434 434 HOH HOH . C 3 HOH A 26 435 435 HOH HOH . C 3 HOH A 27 436 436 HOH HOH . C 3 HOH A 28 437 437 HOH HOH . C 3 HOH A 29 438 438 HOH HOH . C 3 HOH A 30 439 439 HOH HOH . C 3 HOH A 31 440 440 HOH HOH . C 3 HOH A 32 441 441 HOH HOH . C 3 HOH A 33 442 442 HOH HOH . C 3 HOH A 34 443 443 HOH HOH . C 3 HOH A 35 444 444 HOH HOH . C 3 HOH A 36 445 445 HOH HOH . C 3 HOH A 37 446 446 HOH HOH . C 3 HOH A 38 447 447 HOH HOH . C 3 HOH A 39 448 448 HOH HOH . C 3 HOH A 40 449 449 HOH HOH . C 3 HOH A 41 450 450 HOH HOH . C 3 HOH A 42 451 451 HOH HOH . C 3 HOH A 43 452 452 HOH HOH . C 3 HOH A 44 453 453 HOH HOH . C 3 HOH A 45 454 454 HOH HOH . C 3 HOH A 46 455 455 HOH HOH . C 3 HOH A 47 456 456 HOH HOH . C 3 HOH A 48 457 457 HOH HOH . C 3 HOH A 49 458 458 HOH HOH . C 3 HOH A 50 459 459 HOH HOH . C 3 HOH A 51 460 460 HOH HOH . C 3 HOH A 52 461 461 HOH HOH . C 3 HOH A 53 462 462 HOH HOH . C 3 HOH A 54 463 463 HOH HOH . C 3 HOH A 55 464 464 HOH HOH . C 3 HOH A 56 465 465 HOH HOH . C 3 HOH A 57 466 466 HOH HOH . C 3 HOH A 58 467 467 HOH HOH . C 3 HOH A 59 468 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 29.939 10.694 17.493 0.5 16.99 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . B 2 30.618 9.423 17.814 0.5 14.98 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . B 2 30.757 11.838 17.067 0.5 18.53 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . B 2 29.043 10.347 16.233 0.5 18.94 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . B 2 27.772 10.868 15.907 0.5 23.46 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . B 2 27.177 9.973 14.819 0.5 26.46 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . B 2 26.003 10.568 14.23 0.5 28.16 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . B 2 28.095 9.7 13.647 0.5 28.59 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . B 2 27.743 8.496 13.081 0.5 28.66 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . B 2 27.747 10.811 12.675 0.5 32.37 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . B 2 28.122 10.511 11.326 0.5 37.95 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . B 2 26.234 10.803 12.857 0.5 29.4 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . B 2 25.629 12.073 12.548 0.5 26.36 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . B 2 26.098 13.236 13.021 0.5 25.39 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . B 2 25.365 14.254 12.698 0.5 25.24 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . B 2 24.314 13.686 12.02 0.5 24.76 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . B 2 23.263 14.25 11.319 0.5 25.47 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . B 2 23.013 15.561 11.303 0.5 25.04 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . B 2 22.443 13.418 10.676 0.5 26.23 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . B 2 22.728 12.119 10.659 0.5 26.54 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . B 2 23.715 11.475 11.293 0.5 26.21 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . B 2 24.439 12.328 11.97 0.5 24.56 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . B 2 29.094 10.799 18.702 0.5 15.66 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . B 2 28.788 9.777 19.717 0.5 12.22 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . B 2 29.919 10.024 20.644 0.5 10.98 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . B 2 28.505 8.416 19.242 0.5 13.72 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . B 2 27.496 10.28 20.555 0.5 10.94 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . B 2 26.247 10.151 19.953 0.5 8.48 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . B 2 25.21 11.05 20.581 0.5 5.04 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . B 2 24.665 10.37 21.711 0.5 1.99 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . B 2 25.694 12.377 21.1 0.5 5.72 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . B 2 24.597 13.304 21.058 0.5 9.63 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . B 2 26.018 12.042 22.55 0.5 4 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . B 2 25.981 13.205 23.379 0.5 5.38 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . B 2 24.907 11.075 22.901 0.5 1.89 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . B 2 25.336 10.11 23.921 0.5 1.37 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . B 2 24.298 9.986 24.772 0.5 2.18 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . B 2 24.276 9.287 25.919 0.5 2.47 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . B 2 23.127 9.01 26.637 0.5 2.1 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . B 2 23.129 7.933 27.593 0.5 2.86 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . B 2 22.046 9.669 26.25 0.5 1 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . B 2 25.436 8.622 26.135 0.5 1.15 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . B 2 26.539 8.615 25.295 0.5 1 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . B 2 26.482 9.421 24.161 0.5 1 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . B 2 29.242 11.402 10.502 0.5 43.41 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . B 2 28.506 12.459 9.777 0.5 45.77 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . B 2 30.369 11.812 11.403 0.5 41.82 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . B 2 30.026 10.491 9.631 0.5 43.61 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #