data_1DIL
#
_model_server_result.job_id            8n0FhlghazzcK-h6ptZNRQ 
_model_server_result.datetime_utc      '2024-11-04 23:47:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dil 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":383}' 
#
_entry.id    1DIL 
#
_exptl.entry_id    1DIL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.241 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DIL 
_cell.length_a            47.4 
_cell.length_b            82.3 
_cell.length_c            91.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DIL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H20 N O9 P' 
_chem_comp.formula_weight    329.241 
_chem_comp.id                EQP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '(4-ACETAMIDO-2,4-DIDEOXY-D-GLYCERO-ALPHA-D-GALACTO-1-OCTOPYRANOSYL)PHOSPHONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 C2 EQP sing 124 n n 
P1 O1P EQP doub 125 n n 
P1 O2P EQP sing 126 n n 
P1 O3P EQP sing 127 n n 
C2 C3 EQP sing 128 n n 
C2 O6 EQP sing 129 n n 
C2 H2 EQP sing 130 n n 
C3 C4 EQP sing 131 n n 
C3 H32 EQP sing 132 n n 
C3 H31 EQP sing 133 n n 
C4 C5 EQP sing 134 n n 
C4 O4 EQP sing 135 n n 
C4 H4 EQP sing 136 n n 
C5 C6 EQP sing 137 n n 
C5 N5 EQP sing 138 n n 
C5 H5 EQP sing 139 n n 
C6 C7 EQP sing 140 n n 
C6 O6 EQP sing 141 n n 
C6 H6 EQP sing 142 n n 
C7 C8 EQP sing 143 n n 
C7 O7 EQP sing 144 n n 
C7 H7 EQP sing 145 n n 
C8 C9 EQP sing 146 n n 
C8 O8 EQP sing 147 n n 
C8 H8 EQP sing 148 n n 
C9 O9 EQP sing 149 n n 
C9 H92 EQP sing 150 n n 
C9 H91 EQP sing 151 n n 
C10 C11 EQP sing 152 n n 
C10 N5 EQP sing 153 n n 
C10 O10 EQP doub 154 n n 
C11 H111 EQP sing 155 n n 
C11 H113 EQP sing 156 n n 
C11 H112 EQP sing 157 n n 
N5 HN5 EQP sing 158 n n 
O2P HOP2 EQP sing 159 n n 
O3P HOP3 EQP sing 160 n n 
O4 HO4 EQP sing 161 n n 
O7 HO7 EQP sing 162 n n 
O8 HO8 EQP sing 163 n n 
O9 HO9 EQP sing 164 n n 
#
_atom_sites.entry_id                     1DIL 
_atom_sites.fract_transf_matrix[1][1]    0.021097 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012151 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EQP A 1 383 383 EQP EQP . 
C 3 AXP A 1 384 384 AXP AXP . 
D 4 K A 1 690 690 K K . 
E 5 HOH A 1 501 501 HOH HOH . 
E 5 HOH A 2 502 502 HOH HOH . 
E 5 HOH A 3 503 503 HOH HOH . 
E 5 HOH A 4 504 504 HOH HOH . 
E 5 HOH A 5 505 505 HOH HOH . 
E 5 HOH A 6 506 506 HOH HOH . 
E 5 HOH A 7 507 507 HOH HOH . 
E 5 HOH A 8 508 508 HOH HOH . 
E 5 HOH A 9 509 509 HOH HOH . 
E 5 HOH A 10 510 510 HOH HOH . 
E 5 HOH A 11 511 511 HOH HOH . 
E 5 HOH A 12 512 512 HOH HOH . 
E 5 HOH A 13 513 513 HOH HOH . 
E 5 HOH A 14 514 514 HOH HOH . 
E 5 HOH A 15 515 515 HOH HOH . 
E 5 HOH A 16 516 516 HOH HOH . 
E 5 HOH A 17 517 517 HOH HOH . 
E 5 HOH A 18 518 518 HOH HOH . 
E 5 HOH A 19 519 519 HOH HOH . 
E 5 HOH A 20 520 520 HOH HOH . 
E 5 HOH A 21 521 521 HOH HOH . 
E 5 HOH A 22 522 522 HOH HOH . 
E 5 HOH A 23 523 523 HOH HOH . 
E 5 HOH A 24 524 524 HOH HOH . 
E 5 HOH A 25 525 525 HOH HOH . 
E 5 HOH A 26 526 526 HOH HOH . 
E 5 HOH A 27 527 527 HOH HOH . 
E 5 HOH A 28 528 528 HOH HOH . 
E 5 HOH A 29 529 529 HOH HOH . 
E 5 HOH A 30 530 530 HOH HOH . 
E 5 HOH A 31 531 531 HOH HOH . 
E 5 HOH A 32 532 532 HOH HOH . 
E 5 HOH A 33 533 533 HOH HOH . 
E 5 HOH A 34 534 534 HOH HOH . 
E 5 HOH A 35 535 535 HOH HOH . 
E 5 HOH A 36 536 536 HOH HOH . 
E 5 HOH A 37 537 537 HOH HOH . 
E 5 HOH A 38 538 538 HOH HOH . 
E 5 HOH A 39 539 539 HOH HOH . 
E 5 HOH A 40 540 540 HOH HOH . 
E 5 HOH A 41 541 541 HOH HOH . 
E 5 HOH A 42 542 542 HOH HOH . 
E 5 HOH A 43 543 543 HOH HOH . 
E 5 HOH A 44 544 544 HOH HOH . 
E 5 HOH A 45 545 545 HOH HOH . 
E 5 HOH A 46 546 546 HOH HOH . 
E 5 HOH A 47 547 547 HOH HOH . 
E 5 HOH A 48 548 548 HOH HOH . 
E 5 HOH A 49 549 549 HOH HOH . 
E 5 HOH A 50 550 550 HOH HOH . 
E 5 HOH A 51 551 551 HOH HOH . 
E 5 HOH A 52 552 552 HOH HOH . 
E 5 HOH A 53 553 553 HOH HOH . 
E 5 HOH A 54 554 554 HOH HOH . 
E 5 HOH A 55 555 555 HOH HOH . 
E 5 HOH A 56 556 556 HOH HOH . 
E 5 HOH A 57 557 557 HOH HOH . 
E 5 HOH A 58 558 558 HOH HOH . 
E 5 HOH A 59 559 559 HOH HOH . 
E 5 HOH A 60 560 560 HOH HOH . 
E 5 HOH A 61 561 561 HOH HOH . 
E 5 HOH A 62 562 562 HOH HOH . 
E 5 HOH A 63 563 563 HOH HOH . 
E 5 HOH A 64 564 564 HOH HOH . 
E 5 HOH A 65 565 565 HOH HOH . 
E 5 HOH A 66 566 566 HOH HOH . 
E 5 HOH A 67 567 567 HOH HOH . 
E 5 HOH A 68 568 568 HOH HOH . 
E 5 HOH A 69 569 569 HOH HOH . 
E 5 HOH A 70 570 570 HOH HOH . 
E 5 HOH A 71 571 571 HOH HOH . 
E 5 HOH A 72 572 572 HOH HOH . 
E 5 HOH A 73 573 573 HOH HOH . 
E 5 HOH A 74 574 574 HOH HOH . 
E 5 HOH A 75 575 575 HOH HOH . 
E 5 HOH A 76 576 576 HOH HOH . 
E 5 HOH A 77 577 577 HOH HOH . 
E 5 HOH A 78 578 578 HOH HOH . 
E 5 HOH A 79 579 579 HOH HOH . 
E 5 HOH A 80 581 581 HOH HOH . 
E 5 HOH A 81 582 582 HOH HOH . 
E 5 HOH A 82 583 583 HOH HOH . 
E 5 HOH A 83 584 584 HOH HOH . 
E 5 HOH A 84 585 585 HOH HOH . 
E 5 HOH A 85 586 586 HOH HOH . 
E 5 HOH A 86 587 587 HOH HOH . 
E 5 HOH A 87 588 588 HOH HOH . 
E 5 HOH A 88 589 589 HOH HOH . 
E 5 HOH A 89 590 590 HOH HOH . 
E 5 HOH A 90 591 591 HOH HOH . 
E 5 HOH A 91 592 592 HOH HOH . 
E 5 HOH A 92 593 593 HOH HOH . 
E 5 HOH A 93 594 594 HOH HOH . 
E 5 HOH A 94 595 595 HOH HOH . 
E 5 HOH A 95 596 596 HOH HOH . 
E 5 HOH A 96 597 597 HOH HOH . 
E 5 HOH A 97 598 598 HOH HOH . 
E 5 HOH A 98 599 599 HOH HOH . 
E 5 HOH A 99 600 600 HOH HOH . 
E 5 HOH A 100 601 601 HOH HOH . 
E 5 HOH A 101 602 602 HOH HOH . 
E 5 HOH A 102 603 603 HOH HOH . 
E 5 HOH A 103 604 604 HOH HOH . 
E 5 HOH A 104 606 606 HOH HOH . 
E 5 HOH A 105 607 607 HOH HOH . 
E 5 HOH A 106 608 608 HOH HOH . 
E 5 HOH A 107 609 609 HOH HOH . 
E 5 HOH A 108 610 610 HOH HOH . 
E 5 HOH A 109 611 611 HOH HOH . 
E 5 HOH A 110 612 612 HOH HOH . 
E 5 HOH A 111 613 613 HOH HOH . 
E 5 HOH A 112 614 614 HOH HOH . 
E 5 HOH A 113 615 615 HOH HOH . 
E 5 HOH A 114 616 616 HOH HOH . 
E 5 HOH A 115 617 617 HOH HOH . 
E 5 HOH A 116 618 618 HOH HOH . 
E 5 HOH A 117 619 619 HOH HOH . 
E 5 HOH A 118 620 620 HOH HOH . 
E 5 HOH A 119 623 623 HOH HOH . 
E 5 HOH A 120 624 624 HOH HOH . 
E 5 HOH A 121 626 626 HOH HOH . 
E 5 HOH A 122 627 627 HOH HOH . 
E 5 HOH A 123 628 628 HOH HOH . 
E 5 HOH A 124 629 629 HOH HOH . 
E 5 HOH A 125 630 630 HOH HOH . 
E 5 HOH A 126 631 631 HOH HOH . 
E 5 HOH A 127 632 632 HOH HOH . 
E 5 HOH A 128 633 633 HOH HOH . 
E 5 HOH A 129 634 634 HOH HOH . 
E 5 HOH A 130 635 635 HOH HOH . 
E 5 HOH A 131 636 636 HOH HOH . 
E 5 HOH A 132 637 637 HOH HOH . 
E 5 HOH A 133 639 639 HOH HOH . 
E 5 HOH A 134 641 641 HOH HOH . 
E 5 HOH A 135 642 642 HOH HOH . 
E 5 HOH A 136 643 643 HOH HOH . 
E 5 HOH A 137 644 644 HOH HOH . 
E 5 HOH A 138 645 645 HOH HOH . 
E 5 HOH A 139 646 646 HOH HOH . 
E 5 HOH A 140 647 647 HOH HOH . 
E 5 HOH A 141 648 648 HOH HOH . 
E 5 HOH A 142 649 649 HOH HOH . 
E 5 HOH A 143 651 651 HOH HOH . 
E 5 HOH A 144 652 652 HOH HOH . 
E 5 HOH A 145 653 653 HOH HOH . 
E 5 HOH A 146 655 655 HOH HOH . 
E 5 HOH A 147 656 656 HOH HOH . 
E 5 HOH A 148 657 657 HOH HOH . 
E 5 HOH A 149 658 658 HOH HOH . 
E 5 HOH A 150 659 659 HOH HOH . 
E 5 HOH A 151 660 660 HOH HOH . 
E 5 HOH A 152 662 662 HOH HOH . 
E 5 HOH A 153 663 663 HOH HOH . 
E 5 HOH A 154 664 664 HOH HOH . 
E 5 HOH A 155 665 665 HOH HOH . 
E 5 HOH A 156 666 666 HOH HOH . 
E 5 HOH A 157 667 667 HOH HOH . 
E 5 HOH A 158 669 669 HOH HOH . 
E 5 HOH A 159 670 670 HOH HOH . 
E 5 HOH A 160 671 671 HOH HOH . 
E 5 HOH A 161 672 672 HOH HOH . 
E 5 HOH A 162 673 673 HOH HOH . 
E 5 HOH A 163 674 674 HOH HOH . 
E 5 HOH A 164 676 676 HOH HOH . 
E 5 HOH A 165 677 677 HOH HOH . 
E 5 HOH A 166 680 680 HOH HOH . 
E 5 HOH A 167 683 683 HOH HOH . 
E 5 HOH A 168 684 684 HOH HOH . 
E 5 HOH A 169 687 687 HOH HOH . 
E 5 HOH A 170 688 688 HOH HOH . 
E 5 HOH A 171 689 689 HOH HOH . 
E 5 HOH A 172 691 691 HOH HOH . 
E 5 HOH A 173 692 692 HOH HOH . 
E 5 HOH A 174 693 693 HOH HOH . 
E 5 HOH A 175 694 694 HOH HOH . 
E 5 HOH A 176 695 695 HOH HOH . 
E 5 HOH A 177 696 696 HOH HOH . 
E 5 HOH A 178 697 697 HOH HOH . 
E 5 HOH A 179 698 698 HOH HOH . 
E 5 HOH A 180 699 699 HOH HOH . 
E 5 HOH A 181 700 700 HOH HOH . 
E 5 HOH A 182 702 702 HOH HOH . 
E 5 HOH A 183 703 703 HOH HOH . 
E 5 HOH A 184 704 704 HOH HOH . 
E 5 HOH A 185 705 705 HOH HOH . 
E 5 HOH A 186 707 707 HOH HOH . 
E 5 HOH A 187 708 708 HOH HOH . 
E 5 HOH A 188 709 709 HOH HOH . 
E 5 HOH A 189 710 710 HOH HOH . 
E 5 HOH A 190 712 712 HOH HOH . 
E 5 HOH A 191 713 713 HOH HOH . 
E 5 HOH A 192 715 715 HOH HOH . 
E 5 HOH A 193 716 716 HOH HOH . 
E 5 HOH A 194 717 717 HOH HOH . 
E 5 HOH A 195 718 718 HOH HOH . 
E 5 HOH A 196 719 719 HOH HOH . 
E 5 HOH A 197 721 721 HOH HOH . 
E 5 HOH A 198 722 722 HOH HOH . 
E 5 HOH A 199 723 723 HOH HOH . 
E 5 HOH A 200 725 725 HOH HOH . 
E 5 HOH A 201 726 726 HOH HOH . 
E 5 HOH A 202 727 727 HOH HOH . 
E 5 HOH A 203 728 728 HOH HOH . 
E 5 HOH A 204 729 729 HOH HOH . 
E 5 HOH A 205 731 731 HOH HOH . 
E 5 HOH A 206 732 732 HOH HOH . 
E 5 HOH A 207 733 733 HOH HOH . 
E 5 HOH A 208 737 737 HOH HOH . 
E 5 HOH A 209 738 738 HOH HOH . 
E 5 HOH A 210 739 739 HOH HOH . 
E 5 HOH A 211 741 741 HOH HOH . 
E 5 HOH A 212 742 742 HOH HOH . 
E 5 HOH A 213 743 743 HOH HOH . 
E 5 HOH A 214 745 745 HOH HOH . 
E 5 HOH A 215 747 747 HOH HOH . 
E 5 HOH A 216 749 749 HOH HOH . 
E 5 HOH A 217 800 800 HOH HOH . 
E 5 HOH A 218 801 801 HOH HOH . 
E 5 HOH A 219 802 802 HOH HOH . 
E 5 HOH A 220 803 803 HOH HOH . 
E 5 HOH A 221 804 804 HOH HOH . 
E 5 HOH A 222 809 809 HOH HOH . 
E 5 HOH A 223 810 810 HOH HOH . 
E 5 HOH A 224 900 900 HOH HOH . 
E 5 HOH A 225 901 901 HOH HOH . 
E 5 HOH A 226 903 903 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 EQP . A . B 2 43.293 52.157 45.669 0.4 8.53 ? P1 EQP 383 A 1 
HETATM 2 C C2 EQP . A . B 2 42.96 51.334 47.239 0.4 7.59 ? C2 EQP 383 A 1 
HETATM 3 C C3 EQP . A . B 2 41.54 51.54 47.824 0.4 6.94 ? C3 EQP 383 A 1 
HETATM 4 C C4 EQP . A . B 2 41.355 50.696 49.114 0.4 7.84 ? C4 EQP 383 A 1 
HETATM 5 C C5 EQP . A . B 2 42.456 51.087 50.091 0.4 8.06 ? C5 EQP 383 A 1 
HETATM 6 C C6 EQP . A . B 2 43.833 50.861 49.458 0.4 8.27 ? C6 EQP 383 A 1 
HETATM 7 C C7 EQP . A . B 2 45.091 51.095 50.281 0.4 8.41 ? C7 EQP 383 A 1 
HETATM 8 C C8 EQP . A . B 2 46.296 50.808 49.355 0.4 9.58 ? C8 EQP 383 A 1 
HETATM 9 C C9 EQP . A . B 2 47.584 50.999 50.142 0.4 9.9 ? C9 EQP 383 A 1 
HETATM 10 C C10 EQP . A . B 2 42.669 50.688 52.443 0.4 9.98 ? C10 EQP 383 A 1 
HETATM 11 C C11 EQP . A . B 2 42.448 49.753 53.624 0.4 8.72 ? C11 EQP 383 A 1 
HETATM 12 N N5 EQP . A . B 2 42.281 50.26 51.245 0.4 8.43 ? N5 EQP 383 A 1 
HETATM 13 O O1P EQP . A . B 2 42.148 52.22 44.795 0.4 7.77 ? O1P EQP 383 A 1 
HETATM 14 O O2P EQP . A . B 2 43.197 53.63 46.172 0.4 7.97 ? O2P EQP 383 A 1 
HETATM 15 O O3P EQP . A . B 2 44.717 51.809 45.209 0.4 9.52 ? O3P EQP 383 A 1 
HETATM 16 O O4 EQP . A . B 2 40.084 50.875 49.696 0.4 7.61 ? O4 EQP 383 A 1 
HETATM 17 O O6 EQP . A . B 2 43.923 51.712 48.269 0.4 7.72 ? O6 EQP 383 A 1 
HETATM 18 O O7 EQP . A . B 2 45.073 52.413 50.773 0.4 8.13 ? O7 EQP 383 A 1 
HETATM 19 O O8 EQP . A . B 2 46.214 49.476 48.834 0.4 8.93 ? O8 EQP 383 A 1 
HETATM 20 O O9 EQP . A . B 2 47.588 50.127 51.238 0.4 10.9 ? O9 EQP 383 A 1 
HETATM 21 O O10 EQP . A . B 2 43.208 51.781 52.61 0.4 9.24 ? O10 EQP 383 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#