data_1DJ6
#
_model_server_result.job_id            47HFat77Pac5O1fDznSI1g 
_model_server_result.datetime_utc      '2024-10-10 10:22:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":14}' 
#
_entry.id    1DJ6 
#
_exptl.entry_id    1DJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.234 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DJ6 
_cell.length_a            17.93 
_cell.length_b            31.36 
_cell.length_c            44.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DJ6 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OP2 DC 3 A DC 3 4_465 C MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc2 F O HOH . A HOH 51 4_465 C MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc3 F O HOH . A HOH 82 1_555 C MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc4 F O HOH . A HOH 84 4_465 C MG MG . A MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C6 H18 N4' 
_chem_comp.formula_weight    146.234 
_chem_comp.id                104 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     TRIENTINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 104 sing 1 n n 
N1 H11 104 sing 2 n n 
N1 H12 104 sing 3 n n 
C2 C3 104 sing 4 n n 
C2 H21 104 sing 5 n n 
C2 H22 104 sing 6 n n 
C3 N4 104 sing 7 n n 
C3 H31 104 sing 8 n n 
C3 H32 104 sing 9 n n 
N4 C5 104 sing 10 n n 
N4 HN4 104 sing 11 n n 
C5 C6 104 sing 12 n n 
C5 H51 104 sing 13 n n 
C5 H52 104 sing 14 n n 
C6 N7 104 sing 15 n n 
C6 H61 104 sing 16 n n 
C6 H62 104 sing 17 n n 
N7 C8 104 sing 18 n n 
N7 HN7 104 sing 19 n n 
C8 C9 104 sing 20 n n 
C8 H81 104 sing 21 n n 
C8 H82 104 sing 22 n n 
C9 N10 104 sing 23 n n 
C9 H91 104 sing 24 n n 
C9 H92 104 sing 25 n n 
N10 H101 104 sing 26 n n 
N10 H102 104 sing 27 n n 
#
_atom_sites.entry_id                     1DJ6 
_atom_sites.fract_transf_matrix[1][1]    0.055772 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031888 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 104 80 MG MG . 
D 3 104 A 1 13 13 104 104 . 
E 3 104 B 1 14 14 104 104 . 
F 4 HOH A 1 17 17 HOH WAT . 
F 4 HOH A 2 21 21 HOH WAT . 
F 4 HOH A 3 26 26 HOH WAT . 
F 4 HOH A 4 27 27 HOH WAT . 
F 4 HOH A 5 31 31 HOH WAT . 
F 4 HOH A 6 33 33 HOH WAT . 
F 4 HOH A 7 34 34 HOH WAT . 
F 4 HOH A 8 35 35 HOH WAT . 
F 4 HOH A 9 36 36 HOH WAT . 
F 4 HOH A 10 37 37 HOH WAT . 
F 4 HOH A 11 39 39 HOH WAT . 
F 4 HOH A 12 40 40 HOH WAT . 
F 4 HOH A 13 41 41 HOH WAT . 
F 4 HOH A 14 42 42 HOH WAT . 
F 4 HOH A 15 43 43 HOH WAT . 
F 4 HOH A 16 44 44 HOH WAT . 
F 4 HOH A 17 45 45 HOH WAT . 
F 4 HOH A 18 46 46 HOH WAT . 
F 4 HOH A 19 47 47 HOH WAT . 
F 4 HOH A 20 49 49 HOH WAT . 
F 4 HOH A 21 50 50 HOH WAT . 
F 4 HOH A 22 51 51 HOH WAT . 
F 4 HOH A 23 53 53 HOH WAT . 
F 4 HOH A 24 54 54 HOH WAT . 
F 4 HOH A 25 55 55 HOH WAT . 
F 4 HOH A 26 56 56 HOH WAT . 
F 4 HOH A 27 57 57 HOH WAT . 
F 4 HOH A 28 58 58 HOH WAT . 
F 4 HOH A 29 59 59 HOH WAT . 
F 4 HOH A 30 61 61 HOH WAT . 
F 4 HOH A 31 64 64 HOH WAT . 
F 4 HOH A 32 65 65 HOH WAT . 
F 4 HOH A 33 68 68 HOH WAT . 
F 4 HOH A 34 72 72 HOH WAT . 
F 4 HOH A 35 73 73 HOH WAT . 
F 4 HOH A 36 74 74 HOH WAT . 
F 4 HOH A 37 75 75 HOH WAT . 
F 4 HOH A 38 79 79 HOH WAT . 
F 4 HOH A 39 81 81 HOH WAT . 
F 4 HOH A 40 82 82 HOH WAT . 
F 4 HOH A 41 83 83 HOH WAT . 
F 4 HOH A 42 84 84 HOH WAT . 
F 4 HOH A 43 85 85 HOH WAT . 
F 4 HOH A 44 86 86 HOH WAT . 
F 4 HOH A 45 87 87 HOH WAT . 
F 4 HOH A 46 88 88 HOH WAT . 
F 4 HOH A 47 89 89 HOH WAT . 
F 4 HOH A 48 90 90 HOH WAT . 
F 4 HOH A 49 91 91 HOH WAT . 
F 4 HOH A 50 92 92 HOH WAT . 
F 4 HOH A 51 93 93 HOH WAT . 
F 4 HOH A 52 97 97 HOH WAT . 
F 4 HOH A 53 99 99 HOH WAT . 
F 4 HOH A 54 101 101 HOH WAT . 
F 4 HOH A 55 102 102 HOH WAT . 
F 4 HOH A 56 103 103 HOH WAT . 
G 4 HOH B 1 15 15 HOH WAT . 
G 4 HOH B 2 16 16 HOH WAT . 
G 4 HOH B 3 18 18 HOH WAT . 
G 4 HOH B 4 19 19 HOH WAT . 
G 4 HOH B 5 20 20 HOH WAT . 
G 4 HOH B 6 22 22 HOH WAT . 
G 4 HOH B 7 23 23 HOH WAT . 
G 4 HOH B 8 24 24 HOH WAT . 
G 4 HOH B 9 25 25 HOH WAT . 
G 4 HOH B 10 28 28 HOH WAT . 
G 4 HOH B 11 29 29 HOH WAT . 
G 4 HOH B 12 30 30 HOH WAT . 
G 4 HOH B 13 32 32 HOH WAT . 
G 4 HOH B 14 38 38 HOH WAT . 
G 4 HOH B 15 48 48 HOH WAT . 
G 4 HOH B 16 52 52 HOH WAT . 
G 4 HOH B 17 60 60 HOH WAT . 
G 4 HOH B 18 62 62 HOH WAT . 
G 4 HOH B 19 63 63 HOH WAT . 
G 4 HOH B 20 66 66 HOH WAT . 
G 4 HOH B 21 67 67 HOH WAT . 
G 4 HOH B 22 69 69 HOH WAT . 
G 4 HOH B 23 70 70 HOH WAT . 
G 4 HOH B 24 71 71 HOH WAT . 
G 4 HOH B 25 76 76 HOH WAT . 
G 4 HOH B 26 77 77 HOH WAT . 
G 4 HOH B 27 78 78 HOH WAT . 
G 4 HOH B 28 94 94 HOH WAT . 
G 4 HOH B 29 95 95 HOH WAT . 
G 4 HOH B 30 96 96 HOH WAT . 
G 4 HOH B 31 98 98 HOH WAT . 
G 4 HOH B 32 100 100 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 104 . . . E 3 5.543 8.627 6.477 1 4.44 ? N1 104 14 B 1 
HETATM 2 C C2 104 . . . E 3 5.984 8.423 7.905 1 10.36 ? C2 104 14 B 1 
HETATM 3 C C3 104 . . . E 3 7.022 7.498 8.267 1 9.61 ? C3 104 14 B 1 
HETATM 4 N N4 104 . . . E 3 7.933 6.604 7.503 1 38.68 ? N4 104 14 B 1 
HETATM 5 C C5 104 . . . E 3 9.241 6.29 8.18 1 10.56 ? C5 104 14 B 1 
HETATM 6 C C6 104 . . . E 3 10.494 6.306 7.344 1 20.04 ? C6 104 14 B 1 
HETATM 7 N N7 104 . . . E 3 11.116 4.913 7.354 1 17.16 ? N7 104 14 B 1 
HETATM 8 C C8 104 . . . E 3 11.728 3.664 7.918 1 9.63 ? C8 104 14 B 1 
HETATM 9 C C9 104 . . . E 3 12.981 2.934 7.442 1 19.84 ? C9 104 14 B 1 
HETATM 10 N N10 104 . . . E 3 13.401 1.825 8.365 1 14.53 ? N10 104 14 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#