data_1DJO # _model_server_result.job_id DEdty21xN3nUwUA6GjhyxQ _model_server_result.datetime_utc '2024-10-21 04:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1djo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4001}' # _entry.id 1DJO # _exptl.entry_id 1DJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,4-dihydroxy-5-oxo-L-norvaline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DJO _cell.length_a 78.37 _cell.length_b 135.89 _cell.length_c 137.56 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 78.37 0 206.34 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 13 A THR 1020 1_555 C C2 CAB . A CAB 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale2 A OH TYR 27 A TYR 1034 1_555 C C2 CAB . A CAB 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B OG1 THR 13 B THR 3020 1_555 D C2 CAB . B CAB 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale4 B OH TYR 27 B TYR 3034 1_555 D C2 CAB . B CAB 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? # _chem_comp.formula 'C5 H9 N O5' _chem_comp.formula_weight 163.129 _chem_comp.id CAB _chem_comp.mon_nstd_flag . _chem_comp.name 4,4-dihydroxy-5-oxo-L-norvaline _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DJO _atom_sites.fract_transf_matrix[1][1] 0.012719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CAB A 1 4001 1 CAB DON . D 2 CAB B 1 4000 1 CAB DON . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAB . . . C 2 38.702 127.313 90.096 1 25.76 ? C1 CAB 4001 A 1 HETATM 2 O O1 CAB . . . C 2 40.014 126.928 90.576 1 23.95 ? O1 CAB 4001 A 1 HETATM 3 C C2 CAB . . . C 2 38.773 128.228 88.903 1 25.45 ? C2 CAB 4001 A 1 HETATM 4 C C3 CAB . . . C 2 39.648 127.308 88.081 1 23.2 ? C3 CAB 4001 A 1 HETATM 5 C CA CAB . . . C 2 39.972 127.51 86.63 1 22.67 ? CA CAB 4001 A 1 HETATM 6 N N CAB . . . C 2 38.858 127.367 85.68 1 20.1 ? N CAB 4001 A 1 HETATM 7 O O CAB . . . C 2 41.732 128.504 85.309 1 22.17 ? O CAB 4001 A 1 HETATM 8 C C CAB . . . C 2 41.28 127.401 85.897 1 22.31 ? C CAB 4001 A 1 HETATM 9 O OXT CAB . . . C 2 41.882 126.343 85.818 1 22.26 ? OXT CAB 4001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #