data_1DJP # _model_server_result.job_id AsyxK54mpPCX52zXuSYdpA _model_server_result.datetime_utc '2024-12-21 12:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1djp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 1DJP # _exptl.entry_id 1DJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,5-dihydroxy-6-oxo-L-norleucine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DJP _cell.length_a 78.51 _cell.length_b 135.91 _cell.length_c 137.58 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 78.51 0 206.37 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 13 A THR 1020 1_555 C CD DO2 . A DO2 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A OH TYR 27 A TYR 1034 1_555 C CD DO2 . A DO2 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 B OG1 THR 13 B THR 3020 1_555 D CD DO2 . B DO2 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B OH TYR 27 B TYR 3034 1_555 D CD DO2 . B DO2 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.113 ? covale ? covale5 A OG1 THR 13 A THR 1020 1_555 C CG DO2 . A DO2 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? covale ? covale6 B OG1 THR 13 B THR 3020 1_555 D CG DO2 . B DO2 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? # _chem_comp.formula 'C6 H11 N O5' _chem_comp.formula_weight 177.155 _chem_comp.id DO2 _chem_comp.mon_nstd_flag . _chem_comp.name 5,5-dihydroxy-6-oxo-L-norleucine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DJP _atom_sites.fract_transf_matrix[1][1] 0.012737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DO2 A 1 4000 1 DO2 DON . D 2 DO2 B 1 4001 1 DO2 DON . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 2 2 HOH HOH . E 3 HOH A 3 3 3 HOH HOH . E 3 HOH A 4 4 4 HOH HOH . E 3 HOH A 5 5 5 HOH HOH . E 3 HOH A 6 6 6 HOH HOH . E 3 HOH A 7 7 7 HOH HOH . E 3 HOH A 8 8 8 HOH HOH . E 3 HOH A 9 9 9 HOH HOH . E 3 HOH A 10 10 10 HOH HOH . E 3 HOH A 11 11 11 HOH HOH . E 3 HOH A 12 12 12 HOH HOH . E 3 HOH A 13 13 13 HOH HOH . E 3 HOH A 14 14 14 HOH HOH . E 3 HOH A 15 15 15 HOH HOH . E 3 HOH A 16 16 16 HOH HOH . E 3 HOH A 17 17 17 HOH HOH . E 3 HOH A 18 28 28 HOH HOH . E 3 HOH A 19 30 30 HOH HOH . E 3 HOH A 20 31 31 HOH HOH . E 3 HOH A 21 32 32 HOH HOH . E 3 HOH A 22 34 34 HOH HOH . E 3 HOH A 23 37 37 HOH HOH . E 3 HOH A 24 38 38 HOH HOH . E 3 HOH A 25 39 39 HOH HOH . E 3 HOH A 26 40 40 HOH HOH . E 3 HOH A 27 42 42 HOH HOH . E 3 HOH A 28 44 44 HOH HOH . E 3 HOH A 29 45 45 HOH HOH . E 3 HOH A 30 53 53 HOH HOH . E 3 HOH A 31 54 54 HOH HOH . E 3 HOH A 32 94 94 HOH HOH . E 3 HOH A 33 95 95 HOH HOH . E 3 HOH A 34 96 96 HOH HOH . E 3 HOH A 35 97 97 HOH HOH . E 3 HOH A 36 98 98 HOH HOH . E 3 HOH A 37 99 99 HOH HOH . E 3 HOH A 38 100 100 HOH HOH . E 3 HOH A 39 101 101 HOH HOH . E 3 HOH A 40 102 102 HOH HOH . E 3 HOH A 41 103 103 HOH HOH . E 3 HOH A 42 104 104 HOH HOH . E 3 HOH A 43 201 201 HOH HOH . E 3 HOH A 44 202 202 HOH HOH . E 3 HOH A 45 203 203 HOH HOH . E 3 HOH A 46 204 204 HOH HOH . E 3 HOH A 47 205 205 HOH HOH . E 3 HOH A 48 207 207 HOH HOH . E 3 HOH A 49 227 227 HOH HOH . E 3 HOH A 50 228 228 HOH HOH . E 3 HOH A 51 229 229 HOH HOH . E 3 HOH A 52 230 230 HOH HOH . E 3 HOH A 53 231 231 HOH HOH . E 3 HOH A 54 232 232 HOH HOH . E 3 HOH A 55 238 238 HOH HOH . E 3 HOH A 56 244 244 HOH HOH . E 3 HOH A 57 245 245 HOH HOH . E 3 HOH A 58 246 246 HOH HOH . E 3 HOH A 59 247 247 HOH HOH . E 3 HOH A 60 248 248 HOH HOH . E 3 HOH A 61 249 249 HOH HOH . E 3 HOH A 62 250 250 HOH HOH . E 3 HOH A 63 251 251 HOH HOH . E 3 HOH A 64 252 252 HOH HOH . E 3 HOH A 65 253 253 HOH HOH . E 3 HOH A 66 254 254 HOH HOH . E 3 HOH A 67 255 255 HOH HOH . E 3 HOH A 68 256 256 HOH HOH . E 3 HOH A 69 257 257 HOH HOH . E 3 HOH A 70 258 258 HOH HOH . E 3 HOH A 71 259 259 HOH HOH . E 3 HOH A 72 264 264 HOH HOH . E 3 HOH A 73 267 267 HOH HOH . E 3 HOH A 74 268 268 HOH HOH . E 3 HOH A 75 269 269 HOH HOH . E 3 HOH A 76 271 271 HOH HOH . E 3 HOH A 77 272 272 HOH HOH . E 3 HOH A 78 273 273 HOH HOH . E 3 HOH A 79 301 301 HOH HOH . E 3 HOH A 80 302 302 HOH HOH . E 3 HOH A 81 303 303 HOH HOH . E 3 HOH A 82 304 304 HOH HOH . E 3 HOH A 83 305 305 HOH HOH . E 3 HOH A 84 306 306 HOH HOH . E 3 HOH A 85 307 307 HOH HOH . E 3 HOH A 86 308 308 HOH HOH . E 3 HOH A 87 309 309 HOH HOH . E 3 HOH A 88 310 310 HOH HOH . E 3 HOH A 89 311 311 HOH HOH . E 3 HOH A 90 312 312 HOH HOH . E 3 HOH A 91 313 313 HOH HOH . E 3 HOH A 92 314 314 HOH HOH . E 3 HOH A 93 315 315 HOH HOH . E 3 HOH A 94 316 316 HOH HOH . E 3 HOH A 95 325 325 HOH HOH . E 3 HOH A 96 326 326 HOH HOH . E 3 HOH A 97 327 327 HOH HOH . E 3 HOH A 98 328 328 HOH HOH . E 3 HOH A 99 329 329 HOH HOH . E 3 HOH A 100 330 330 HOH HOH . E 3 HOH A 101 331 331 HOH HOH . E 3 HOH A 102 334 334 HOH HOH . F 3 HOH B 1 18 18 HOH HOH . F 3 HOH B 2 19 19 HOH HOH . F 3 HOH B 3 20 20 HOH HOH . F 3 HOH B 4 21 21 HOH HOH . F 3 HOH B 5 22 22 HOH HOH . F 3 HOH B 6 23 23 HOH HOH . F 3 HOH B 7 24 24 HOH HOH . F 3 HOH B 8 25 25 HOH HOH . F 3 HOH B 9 26 26 HOH HOH . F 3 HOH B 10 27 27 HOH HOH . F 3 HOH B 11 29 29 HOH HOH . F 3 HOH B 12 33 33 HOH HOH . F 3 HOH B 13 35 35 HOH HOH . F 3 HOH B 14 36 36 HOH HOH . F 3 HOH B 15 41 41 HOH HOH . F 3 HOH B 16 43 43 HOH HOH . F 3 HOH B 17 46 46 HOH HOH . F 3 HOH B 18 47 47 HOH HOH . F 3 HOH B 19 48 48 HOH HOH . F 3 HOH B 20 49 49 HOH HOH . F 3 HOH B 21 50 50 HOH HOH . F 3 HOH B 22 51 51 HOH HOH . F 3 HOH B 23 52 52 HOH HOH . F 3 HOH B 24 55 55 HOH HOH . F 3 HOH B 25 56 56 HOH HOH . F 3 HOH B 26 57 57 HOH HOH . F 3 HOH B 27 58 58 HOH HOH . F 3 HOH B 28 59 59 HOH HOH . F 3 HOH B 29 60 60 HOH HOH . F 3 HOH B 30 61 61 HOH HOH . F 3 HOH B 31 62 62 HOH HOH . F 3 HOH B 32 63 63 HOH HOH . F 3 HOH B 33 64 64 HOH HOH . F 3 HOH B 34 65 65 HOH HOH . F 3 HOH B 35 66 66 HOH HOH . F 3 HOH B 36 67 67 HOH HOH . F 3 HOH B 37 68 68 HOH HOH . F 3 HOH B 38 69 69 HOH HOH . F 3 HOH B 39 70 70 HOH HOH . F 3 HOH B 40 71 71 HOH HOH . F 3 HOH B 41 72 72 HOH HOH . F 3 HOH B 42 73 73 HOH HOH . F 3 HOH B 43 74 74 HOH HOH . F 3 HOH B 44 76 76 HOH HOH . F 3 HOH B 45 77 77 HOH HOH . F 3 HOH B 46 78 78 HOH HOH . F 3 HOH B 47 79 79 HOH HOH . F 3 HOH B 48 80 80 HOH HOH . F 3 HOH B 49 81 81 HOH HOH . F 3 HOH B 50 82 82 HOH HOH . F 3 HOH B 51 83 83 HOH HOH . F 3 HOH B 52 84 84 HOH HOH . F 3 HOH B 53 85 85 HOH HOH . F 3 HOH B 54 86 86 HOH HOH . F 3 HOH B 55 87 87 HOH HOH . F 3 HOH B 56 88 88 HOH HOH . F 3 HOH B 57 89 89 HOH HOH . F 3 HOH B 58 90 90 HOH HOH . F 3 HOH B 59 91 91 HOH HOH . F 3 HOH B 60 92 92 HOH HOH . F 3 HOH B 61 93 93 HOH HOH . F 3 HOH B 62 211 211 HOH HOH . F 3 HOH B 63 212 212 HOH HOH . F 3 HOH B 64 213 213 HOH HOH . F 3 HOH B 65 214 214 HOH HOH . F 3 HOH B 66 215 215 HOH HOH . F 3 HOH B 67 216 216 HOH HOH . F 3 HOH B 68 217 217 HOH HOH . F 3 HOH B 69 218 218 HOH HOH . F 3 HOH B 70 219 219 HOH HOH . F 3 HOH B 71 220 220 HOH HOH . F 3 HOH B 72 221 221 HOH HOH . F 3 HOH B 73 222 222 HOH HOH . F 3 HOH B 74 223 223 HOH HOH . F 3 HOH B 75 224 224 HOH HOH . F 3 HOH B 76 225 225 HOH HOH . F 3 HOH B 77 226 226 HOH HOH . F 3 HOH B 78 233 233 HOH HOH . F 3 HOH B 79 234 234 HOH HOH . F 3 HOH B 80 235 235 HOH HOH . F 3 HOH B 81 236 236 HOH HOH . F 3 HOH B 82 237 237 HOH HOH . F 3 HOH B 83 239 239 HOH HOH . F 3 HOH B 84 240 240 HOH HOH . F 3 HOH B 85 241 241 HOH HOH . F 3 HOH B 86 242 242 HOH HOH . F 3 HOH B 87 243 243 HOH HOH . F 3 HOH B 88 260 260 HOH HOH . F 3 HOH B 89 261 261 HOH HOH . F 3 HOH B 90 262 262 HOH HOH . F 3 HOH B 91 263 263 HOH HOH . F 3 HOH B 92 265 265 HOH HOH . F 3 HOH B 93 266 266 HOH HOH . F 3 HOH B 94 274 274 HOH HOH . F 3 HOH B 95 275 275 HOH HOH . F 3 HOH B 96 317 317 HOH HOH . F 3 HOH B 97 319 319 HOH HOH . F 3 HOH B 98 320 320 HOH HOH . F 3 HOH B 99 321 321 HOH HOH . F 3 HOH B 100 322 322 HOH HOH . F 3 HOH B 101 323 323 HOH HOH . F 3 HOH B 102 324 324 HOH HOH . F 3 HOH B 103 333 333 HOH HOH . F 3 HOH B 104 335 335 HOH HOH . F 3 HOH B 105 336 336 HOH HOH . F 3 HOH B 106 337 337 HOH HOH . F 3 HOH B 107 338 338 HOH HOH . F 3 HOH B 108 339 339 HOH HOH . F 3 HOH B 109 340 340 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C DO2 . . . C 2 40.919 127.272 85.673 1 34.87 ? C DO2 4000 A 1 HETATM 2 N N DO2 . . . C 2 38.697 126.424 85.267 1 33.04 ? N DO2 4000 A 1 HETATM 3 O O DO2 . . . C 2 41.432 126.047 85.731 1 32.2 ? O DO2 4000 A 1 HETATM 4 C CA DO2 . . . C 2 39.466 127.388 86.033 1 34.79 ? CA DO2 4000 A 1 HETATM 5 C CB DO2 . . . C 2 39.236 127.154 87.54 1 37.56 ? CB DO2 4000 A 1 HETATM 6 C CD DO2 . . . C 2 38.577 128.209 89.661 1 43.9 ? CD DO2 4000 A 1 HETATM 7 C CE DO2 . . . C 2 39.119 126.923 90.215 1 46.19 ? CE DO2 4000 A 1 HETATM 8 C CG DO2 . . . C 2 38.689 128.399 88.177 1 43.9 ? CG DO2 4000 A 1 HETATM 9 O OE1 DO2 . . . C 2 40.295 127.071 90.502 1 48.09 ? OE1 DO2 4000 A 1 HETATM 10 O OXT DO2 . . . C 2 41.601 128.23 85.345 1 35.29 ? OXT DO2 4000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 10 #