data_1DJU
#
_model_server_result.job_id            GxEDD1KblNoD5nTNi9dtug 
_model_server_result.datetime_utc      '2024-10-24 04:22:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dju 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1DJU 
#
_exptl.entry_id    1DJU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DJU 
_cell.length_a            64.01 
_cell.length_b            124.87 
_cell.length_c            128.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DJU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C4A PLP . A PLP 400 1_555 A NZ LYS 232 A LYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 D C4A PLP . B PLP 400 1_555 B NZ LYS 232 B LYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     1DJU 
_atom_sites.fract_transf_matrix[1][1]    0.015623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008008 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007765 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 400 233 PLP PLP . 
D 2 PLP B 1 400 233 PLP PLP . 
E 3 HOH A 1 401 1 HOH HOH . 
E 3 HOH A 2 402 3 HOH HOH . 
E 3 HOH A 3 403 6 HOH HOH . 
E 3 HOH A 4 404 7 HOH HOH . 
E 3 HOH A 5 405 9 HOH HOH . 
E 3 HOH A 6 406 12 HOH HOH . 
E 3 HOH A 7 407 13 HOH HOH . 
E 3 HOH A 8 408 16 HOH HOH . 
E 3 HOH A 9 409 18 HOH HOH . 
E 3 HOH A 10 410 20 HOH HOH . 
E 3 HOH A 11 411 25 HOH HOH . 
E 3 HOH A 12 412 26 HOH HOH . 
E 3 HOH A 13 413 29 HOH HOH . 
E 3 HOH A 14 414 31 HOH HOH . 
E 3 HOH A 15 415 33 HOH HOH . 
E 3 HOH A 16 416 34 HOH HOH . 
E 3 HOH A 17 417 37 HOH HOH . 
E 3 HOH A 18 418 38 HOH HOH . 
E 3 HOH A 19 419 39 HOH HOH . 
E 3 HOH A 20 420 40 HOH HOH . 
E 3 HOH A 21 421 43 HOH HOH . 
E 3 HOH A 22 422 46 HOH HOH . 
E 3 HOH A 23 423 48 HOH HOH . 
E 3 HOH A 24 424 50 HOH HOH . 
E 3 HOH A 25 425 51 HOH HOH . 
E 3 HOH A 26 426 52 HOH HOH . 
E 3 HOH A 27 427 54 HOH HOH . 
E 3 HOH A 28 428 56 HOH HOH . 
E 3 HOH A 29 429 57 HOH HOH . 
E 3 HOH A 30 430 58 HOH HOH . 
E 3 HOH A 31 431 59 HOH HOH . 
E 3 HOH A 32 432 62 HOH HOH . 
E 3 HOH A 33 433 64 HOH HOH . 
E 3 HOH A 34 434 65 HOH HOH . 
E 3 HOH A 35 435 66 HOH HOH . 
E 3 HOH A 36 436 67 HOH HOH . 
E 3 HOH A 37 437 70 HOH HOH . 
E 3 HOH A 38 438 71 HOH HOH . 
E 3 HOH A 39 439 73 HOH HOH . 
E 3 HOH A 40 440 79 HOH HOH . 
E 3 HOH A 41 441 80 HOH HOH . 
E 3 HOH A 42 442 81 HOH HOH . 
E 3 HOH A 43 443 84 HOH HOH . 
E 3 HOH A 44 444 86 HOH HOH . 
E 3 HOH A 45 445 88 HOH HOH . 
E 3 HOH A 46 446 89 HOH HOH . 
E 3 HOH A 47 447 90 HOH HOH . 
E 3 HOH A 48 448 95 HOH HOH . 
E 3 HOH A 49 449 98 HOH HOH . 
E 3 HOH A 50 450 100 HOH HOH . 
E 3 HOH A 51 451 101 HOH HOH . 
E 3 HOH A 52 452 102 HOH HOH . 
E 3 HOH A 53 453 104 HOH HOH . 
E 3 HOH A 54 454 106 HOH HOH . 
E 3 HOH A 55 455 107 HOH HOH . 
E 3 HOH A 56 456 110 HOH HOH . 
E 3 HOH A 57 457 113 HOH HOH . 
E 3 HOH A 58 458 114 HOH HOH . 
E 3 HOH A 59 459 115 HOH HOH . 
E 3 HOH A 60 460 116 HOH HOH . 
E 3 HOH A 61 461 117 HOH HOH . 
E 3 HOH A 62 462 120 HOH HOH . 
E 3 HOH A 63 463 122 HOH HOH . 
E 3 HOH A 64 464 123 HOH HOH . 
E 3 HOH A 65 465 125 HOH HOH . 
E 3 HOH A 66 466 126 HOH HOH . 
E 3 HOH A 67 467 131 HOH HOH . 
E 3 HOH A 68 468 133 HOH HOH . 
E 3 HOH A 69 469 134 HOH HOH . 
E 3 HOH A 70 470 135 HOH HOH . 
E 3 HOH A 71 471 136 HOH HOH . 
E 3 HOH A 72 472 137 HOH HOH . 
E 3 HOH A 73 473 139 HOH HOH . 
E 3 HOH A 74 474 140 HOH HOH . 
E 3 HOH A 75 475 144 HOH HOH . 
E 3 HOH A 76 476 145 HOH HOH . 
E 3 HOH A 77 477 147 HOH HOH . 
E 3 HOH A 78 478 149 HOH HOH . 
E 3 HOH A 79 479 151 HOH HOH . 
E 3 HOH A 80 480 152 HOH HOH . 
E 3 HOH A 81 481 153 HOH HOH . 
E 3 HOH A 82 482 154 HOH HOH . 
E 3 HOH A 83 483 155 HOH HOH . 
E 3 HOH A 84 484 156 HOH HOH . 
E 3 HOH A 85 485 157 HOH HOH . 
E 3 HOH A 86 486 159 HOH HOH . 
E 3 HOH A 87 487 162 HOH HOH . 
E 3 HOH A 88 488 164 HOH HOH . 
E 3 HOH A 89 489 166 HOH HOH . 
E 3 HOH A 90 490 170 HOH HOH . 
E 3 HOH A 91 491 171 HOH HOH . 
E 3 HOH A 92 492 173 HOH HOH . 
E 3 HOH A 93 493 175 HOH HOH . 
E 3 HOH A 94 494 176 HOH HOH . 
E 3 HOH A 95 495 179 HOH HOH . 
E 3 HOH A 96 496 180 HOH HOH . 
E 3 HOH A 97 497 181 HOH HOH . 
E 3 HOH A 98 498 187 HOH HOH . 
E 3 HOH A 99 499 188 HOH HOH . 
E 3 HOH A 100 500 190 HOH HOH . 
E 3 HOH A 101 501 191 HOH HOH . 
E 3 HOH A 102 502 192 HOH HOH . 
E 3 HOH A 103 503 194 HOH HOH . 
E 3 HOH A 104 504 195 HOH HOH . 
E 3 HOH A 105 505 196 HOH HOH . 
E 3 HOH A 106 506 198 HOH HOH . 
E 3 HOH A 107 507 200 HOH HOH . 
F 3 HOH B 1 401 2 HOH HOH . 
F 3 HOH B 2 402 4 HOH HOH . 
F 3 HOH B 3 403 5 HOH HOH . 
F 3 HOH B 4 404 8 HOH HOH . 
F 3 HOH B 5 405 10 HOH HOH . 
F 3 HOH B 6 406 11 HOH HOH . 
F 3 HOH B 7 407 14 HOH HOH . 
F 3 HOH B 8 408 15 HOH HOH . 
F 3 HOH B 9 409 17 HOH HOH . 
F 3 HOH B 10 410 19 HOH HOH . 
F 3 HOH B 11 411 21 HOH HOH . 
F 3 HOH B 12 412 22 HOH HOH . 
F 3 HOH B 13 413 23 HOH HOH . 
F 3 HOH B 14 414 24 HOH HOH . 
F 3 HOH B 15 415 27 HOH HOH . 
F 3 HOH B 16 416 28 HOH HOH . 
F 3 HOH B 17 417 30 HOH HOH . 
F 3 HOH B 18 418 32 HOH HOH . 
F 3 HOH B 19 419 35 HOH HOH . 
F 3 HOH B 20 420 36 HOH HOH . 
F 3 HOH B 21 421 41 HOH HOH . 
F 3 HOH B 22 422 42 HOH HOH . 
F 3 HOH B 23 423 44 HOH HOH . 
F 3 HOH B 24 424 45 HOH HOH . 
F 3 HOH B 25 425 47 HOH HOH . 
F 3 HOH B 26 426 49 HOH HOH . 
F 3 HOH B 27 427 53 HOH HOH . 
F 3 HOH B 28 428 55 HOH HOH . 
F 3 HOH B 29 429 60 HOH HOH . 
F 3 HOH B 30 430 61 HOH HOH . 
F 3 HOH B 31 431 63 HOH HOH . 
F 3 HOH B 32 432 68 HOH HOH . 
F 3 HOH B 33 433 69 HOH HOH . 
F 3 HOH B 34 434 72 HOH HOH . 
F 3 HOH B 35 435 74 HOH HOH . 
F 3 HOH B 36 436 75 HOH HOH . 
F 3 HOH B 37 437 76 HOH HOH . 
F 3 HOH B 38 438 77 HOH HOH . 
F 3 HOH B 39 439 78 HOH HOH . 
F 3 HOH B 40 440 82 HOH HOH . 
F 3 HOH B 41 441 83 HOH HOH . 
F 3 HOH B 42 442 85 HOH HOH . 
F 3 HOH B 43 443 87 HOH HOH . 
F 3 HOH B 44 444 91 HOH HOH . 
F 3 HOH B 45 445 92 HOH HOH . 
F 3 HOH B 46 446 93 HOH HOH . 
F 3 HOH B 47 447 94 HOH HOH . 
F 3 HOH B 48 448 96 HOH HOH . 
F 3 HOH B 49 449 97 HOH HOH . 
F 3 HOH B 50 450 99 HOH HOH . 
F 3 HOH B 51 451 103 HOH HOH . 
F 3 HOH B 52 452 105 HOH HOH . 
F 3 HOH B 53 453 108 HOH HOH . 
F 3 HOH B 54 454 109 HOH HOH . 
F 3 HOH B 55 455 111 HOH HOH . 
F 3 HOH B 56 456 112 HOH HOH . 
F 3 HOH B 57 457 118 HOH HOH . 
F 3 HOH B 58 458 119 HOH HOH . 
F 3 HOH B 59 459 121 HOH HOH . 
F 3 HOH B 60 460 124 HOH HOH . 
F 3 HOH B 61 461 127 HOH HOH . 
F 3 HOH B 62 462 128 HOH HOH . 
F 3 HOH B 63 463 129 HOH HOH . 
F 3 HOH B 64 464 130 HOH HOH . 
F 3 HOH B 65 465 132 HOH HOH . 
F 3 HOH B 66 466 138 HOH HOH . 
F 3 HOH B 67 467 141 HOH HOH . 
F 3 HOH B 68 468 142 HOH HOH . 
F 3 HOH B 69 469 143 HOH HOH . 
F 3 HOH B 70 470 146 HOH HOH . 
F 3 HOH B 71 471 148 HOH HOH . 
F 3 HOH B 72 472 150 HOH HOH . 
F 3 HOH B 73 473 158 HOH HOH . 
F 3 HOH B 74 474 160 HOH HOH . 
F 3 HOH B 75 475 161 HOH HOH . 
F 3 HOH B 76 476 163 HOH HOH . 
F 3 HOH B 77 477 165 HOH HOH . 
F 3 HOH B 78 478 167 HOH HOH . 
F 3 HOH B 79 479 168 HOH HOH . 
F 3 HOH B 80 480 169 HOH HOH . 
F 3 HOH B 81 481 172 HOH HOH . 
F 3 HOH B 82 482 174 HOH HOH . 
F 3 HOH B 83 483 177 HOH HOH . 
F 3 HOH B 84 484 178 HOH HOH . 
F 3 HOH B 85 485 182 HOH HOH . 
F 3 HOH B 86 486 183 HOH HOH . 
F 3 HOH B 87 487 184 HOH HOH . 
F 3 HOH B 88 488 185 HOH HOH . 
F 3 HOH B 89 489 186 HOH HOH . 
F 3 HOH B 90 490 189 HOH HOH . 
F 3 HOH B 91 491 193 HOH HOH . 
F 3 HOH B 92 492 197 HOH HOH . 
F 3 HOH B 93 493 199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 43.796 76.197 23.57 1 18.12 ? N1 PLP 400 B 1 
HETATM 2 C C2 PLP . . . D 2 44.85 76.98 23.23 1 17.88 ? C2 PLP 400 B 1 
HETATM 3 C C2A PLP . . . D 2 45.047 77.265 21.742 1 17.78 ? C2A PLP 400 B 1 
HETATM 4 C C3 PLP . . . D 2 45.628 77.534 24.246 1 17.58 ? C3 PLP 400 B 1 
HETATM 5 O O3 PLP . . . D 2 46.697 78.292 23.885 1 15.77 ? O3 PLP 400 B 1 
HETATM 6 C C4 PLP . . . D 2 45.285 77.345 25.605 1 19.71 ? C4 PLP 400 B 1 
HETATM 7 C C4A PLP . . . D 2 46.047 77.921 26.645 1 20.47 ? C4A PLP 400 B 1 
HETATM 8 C C5 PLP . . . D 2 44.107 76.578 25.828 1 18.69 ? C5 PLP 400 B 1 
HETATM 9 C C6 PLP . . . D 2 43.37 76.004 24.808 1 17.92 ? C6 PLP 400 B 1 
HETATM 10 C C5A PLP . . . D 2 43.397 76.478 27.174 1 18.79 ? C5A PLP 400 B 1 
HETATM 11 O O4P PLP . . . D 2 43.889 75.493 28.029 1 20.51 ? O4P PLP 400 B 1 
HETATM 12 P P PLP . . . D 2 43.362 75.523 29.449 1 20.32 ? P PLP 400 B 1 
HETATM 13 O O1P PLP . . . D 2 42.044 76.201 29.545 1 20.31 ? O1P PLP 400 B 1 
HETATM 14 O O2P PLP . . . D 2 44.291 76.096 30.439 1 21.87 ? O2P PLP 400 B 1 
HETATM 15 O O3P PLP . . . D 2 43.122 74.104 29.788 1 21.14 ? O3P PLP 400 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#