data_1DK8
#
_model_server_result.job_id            X5YOBAohVzO5IlOrUFt9ig 
_model_server_result.datetime_utc      '2024-11-29 08:11:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":603}' 
#
_entry.id    1DK8 
#
_exptl.entry_id    1DK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DK8 
_cell.length_a            32.57 
_cell.length_b            117.88 
_cell.length_c            81.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_556 x+1/2,-y+1/2,-z+1 1 0 0 0 -1 0 0 0 -1 16.285 58.94 81.9 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     1DK8 
_atom_sites.fract_transf_matrix[1][1]    0.030703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 501 SO4 SO4 . 
C 2 SO4 A 1 502 502 SO4 SO4 . 
D 2 SO4 A 1 503 503 SO4 SO4 . 
E 2 SO4 A 1 504 504 SO4 SO4 . 
F 2 SO4 A 1 505 505 SO4 SO4 . 
G 2 SO4 A 1 506 506 SO4 SO4 . 
H 3 DTT A 1 701 701 DTT DTT . 
I 4 GOL A 1 601 601 GOL GOL . 
J 4 GOL A 1 602 602 GOL GOL . 
K 4 GOL A 1 603 603 GOL GOL . 
L 4 GOL A 1 604 604 GOL GOL . 
M 4 GOL A 1 605 605 GOL GOL . 
N 5 HOH A 1 301 301 HOH HOH . 
N 5 HOH A 2 302 302 HOH HOH . 
N 5 HOH A 3 303 303 HOH HOH . 
N 5 HOH A 4 304 304 HOH HOH . 
N 5 HOH A 5 305 305 HOH HOH . 
N 5 HOH A 6 306 306 HOH HOH . 
N 5 HOH A 7 307 307 HOH HOH . 
N 5 HOH A 8 308 308 HOH HOH . 
N 5 HOH A 9 309 309 HOH HOH . 
N 5 HOH A 10 310 310 HOH HOH . 
N 5 HOH A 11 311 311 HOH HOH . 
N 5 HOH A 12 312 312 HOH HOH . 
N 5 HOH A 13 313 313 HOH HOH . 
N 5 HOH A 14 314 314 HOH HOH . 
N 5 HOH A 15 315 315 HOH HOH . 
N 5 HOH A 16 316 316 HOH HOH . 
N 5 HOH A 17 317 317 HOH HOH . 
N 5 HOH A 18 318 318 HOH HOH . 
N 5 HOH A 19 319 319 HOH HOH . 
N 5 HOH A 20 320 320 HOH HOH . 
N 5 HOH A 21 321 321 HOH HOH . 
N 5 HOH A 22 322 322 HOH HOH . 
N 5 HOH A 23 323 323 HOH HOH . 
N 5 HOH A 24 324 324 HOH HOH . 
N 5 HOH A 25 325 325 HOH HOH . 
N 5 HOH A 26 326 326 HOH HOH . 
N 5 HOH A 27 327 327 HOH HOH . 
N 5 HOH A 28 328 328 HOH HOH . 
N 5 HOH A 29 329 329 HOH HOH . 
N 5 HOH A 30 330 330 HOH HOH . 
N 5 HOH A 31 331 331 HOH HOH . 
N 5 HOH A 32 332 332 HOH HOH . 
N 5 HOH A 33 333 333 HOH HOH . 
N 5 HOH A 34 334 334 HOH HOH . 
N 5 HOH A 35 335 335 HOH HOH . 
N 5 HOH A 36 336 336 HOH HOH . 
N 5 HOH A 37 337 337 HOH HOH . 
N 5 HOH A 38 338 338 HOH HOH . 
N 5 HOH A 39 339 339 HOH HOH . 
N 5 HOH A 40 340 340 HOH HOH . 
N 5 HOH A 41 341 341 HOH HOH . 
N 5 HOH A 42 342 342 HOH HOH . 
N 5 HOH A 43 343 343 HOH HOH . 
N 5 HOH A 44 344 344 HOH HOH . 
N 5 HOH A 45 345 345 HOH HOH . 
N 5 HOH A 46 346 346 HOH HOH . 
N 5 HOH A 47 347 347 HOH HOH . 
N 5 HOH A 48 348 348 HOH HOH . 
N 5 HOH A 49 349 349 HOH HOH . 
N 5 HOH A 50 350 350 HOH HOH . 
N 5 HOH A 51 351 351 HOH HOH . 
N 5 HOH A 52 352 352 HOH HOH . 
N 5 HOH A 53 353 353 HOH HOH . 
N 5 HOH A 54 354 354 HOH HOH . 
N 5 HOH A 55 355 355 HOH HOH . 
N 5 HOH A 56 356 356 HOH HOH . 
N 5 HOH A 57 357 357 HOH HOH . 
N 5 HOH A 58 358 358 HOH HOH . 
N 5 HOH A 59 359 359 HOH HOH . 
N 5 HOH A 60 360 360 HOH HOH . 
N 5 HOH A 61 361 361 HOH HOH . 
N 5 HOH A 62 362 362 HOH HOH . 
N 5 HOH A 63 363 363 HOH HOH . 
N 5 HOH A 64 364 364 HOH HOH . 
N 5 HOH A 65 365 365 HOH HOH . 
N 5 HOH A 66 366 366 HOH HOH . 
N 5 HOH A 67 367 367 HOH HOH . 
N 5 HOH A 68 368 368 HOH HOH . 
N 5 HOH A 69 369 369 HOH HOH . 
N 5 HOH A 70 370 370 HOH HOH . 
N 5 HOH A 71 371 371 HOH HOH . 
N 5 HOH A 72 372 372 HOH HOH . 
N 5 HOH A 73 373 373 HOH HOH . 
N 5 HOH A 74 374 374 HOH HOH . 
N 5 HOH A 75 375 375 HOH HOH . 
N 5 HOH A 76 376 376 HOH HOH . 
N 5 HOH A 77 377 377 HOH HOH . 
N 5 HOH A 78 378 378 HOH HOH . 
N 5 HOH A 79 379 379 HOH HOH . 
N 5 HOH A 80 380 380 HOH HOH . 
N 5 HOH A 81 381 381 HOH HOH . 
N 5 HOH A 82 382 382 HOH HOH . 
N 5 HOH A 83 383 383 HOH HOH . 
N 5 HOH A 84 384 384 HOH HOH . 
N 5 HOH A 85 385 385 HOH HOH . 
N 5 HOH A 86 386 386 HOH HOH . 
N 5 HOH A 87 387 387 HOH HOH . 
N 5 HOH A 88 388 388 HOH HOH . 
N 5 HOH A 89 389 389 HOH HOH . 
N 5 HOH A 90 390 390 HOH HOH . 
N 5 HOH A 91 391 391 HOH HOH . 
N 5 HOH A 92 392 392 HOH HOH . 
N 5 HOH A 93 393 393 HOH HOH . 
N 5 HOH A 94 394 394 HOH HOH . 
N 5 HOH A 95 395 395 HOH HOH . 
N 5 HOH A 96 396 396 HOH HOH . 
N 5 HOH A 97 397 397 HOH HOH . 
N 5 HOH A 98 398 398 HOH HOH . 
N 5 HOH A 99 399 399 HOH HOH . 
N 5 HOH A 100 400 400 HOH HOH . 
N 5 HOH A 101 401 401 HOH HOH . 
N 5 HOH A 102 402 402 HOH HOH . 
N 5 HOH A 103 403 403 HOH HOH . 
N 5 HOH A 104 404 404 HOH HOH . 
N 5 HOH A 105 405 405 HOH HOH . 
N 5 HOH A 106 406 406 HOH HOH . 
N 5 HOH A 107 407 407 HOH HOH . 
N 5 HOH A 108 408 408 HOH HOH . 
N 5 HOH A 109 409 409 HOH HOH . 
N 5 HOH A 110 410 410 HOH HOH . 
N 5 HOH A 111 411 411 HOH HOH . 
N 5 HOH A 112 412 412 HOH HOH . 
N 5 HOH A 113 413 413 HOH HOH . 
N 5 HOH A 114 414 414 HOH HOH . 
N 5 HOH A 115 415 415 HOH HOH . 
N 5 HOH A 116 416 416 HOH HOH . 
N 5 HOH A 117 417 417 HOH HOH . 
N 5 HOH A 118 418 418 HOH HOH . 
N 5 HOH A 119 419 419 HOH HOH . 
N 5 HOH A 120 420 420 HOH HOH . 
N 5 HOH A 121 421 421 HOH HOH . 
N 5 HOH A 122 422 422 HOH HOH . 
N 5 HOH A 123 423 423 HOH HOH . 
N 5 HOH A 124 424 424 HOH HOH . 
N 5 HOH A 125 425 425 HOH HOH . 
N 5 HOH A 126 426 426 HOH HOH . 
N 5 HOH A 127 427 427 HOH HOH . 
N 5 HOH A 128 428 428 HOH HOH . 
N 5 HOH A 129 429 429 HOH HOH . 
N 5 HOH A 130 430 430 HOH HOH . 
N 5 HOH A 131 431 431 HOH HOH . 
N 5 HOH A 132 432 432 HOH HOH . 
N 5 HOH A 133 433 433 HOH HOH . 
N 5 HOH A 134 434 434 HOH HOH . 
N 5 HOH A 135 435 435 HOH HOH . 
N 5 HOH A 136 436 436 HOH HOH . 
N 5 HOH A 137 437 437 HOH HOH . 
N 5 HOH A 138 438 438 HOH HOH . 
N 5 HOH A 139 439 439 HOH HOH . 
N 5 HOH A 140 440 440 HOH HOH . 
N 5 HOH A 141 441 441 HOH HOH . 
N 5 HOH A 142 442 442 HOH HOH . 
N 5 HOH A 143 443 443 HOH HOH . 
N 5 HOH A 144 444 444 HOH HOH . 
N 5 HOH A 145 445 445 HOH HOH . 
N 5 HOH A 146 446 446 HOH HOH . 
N 5 HOH A 147 447 447 HOH HOH . 
N 5 HOH A 148 448 448 HOH HOH . 
N 5 HOH A 149 449 449 HOH HOH . 
N 5 HOH A 150 450 450 HOH HOH . 
N 5 HOH A 151 451 451 HOH HOH . 
N 5 HOH A 152 452 452 HOH HOH . 
N 5 HOH A 153 453 453 HOH HOH . 
N 5 HOH A 154 454 454 HOH HOH . 
N 5 HOH A 155 455 455 HOH HOH . 
N 5 HOH A 156 456 456 HOH HOH . 
N 5 HOH A 157 457 457 HOH HOH . 
N 5 HOH A 158 458 458 HOH HOH . 
N 5 HOH A 159 459 459 HOH HOH . 
N 5 HOH A 160 460 460 HOH HOH . 
N 5 HOH A 161 461 461 HOH HOH . 
N 5 HOH A 162 462 462 HOH HOH . 
N 5 HOH A 163 463 463 HOH HOH . 
N 5 HOH A 164 464 464 HOH HOH . 
N 5 HOH A 165 465 465 HOH HOH . 
N 5 HOH A 166 466 466 HOH HOH . 
N 5 HOH A 167 467 467 HOH HOH . 
N 5 HOH A 168 468 468 HOH HOH . 
N 5 HOH A 169 469 469 HOH HOH . 
N 5 HOH A 170 470 470 HOH HOH . 
N 5 HOH A 171 471 471 HOH HOH . 
N 5 HOH A 172 472 472 HOH HOH . 
N 5 HOH A 173 473 473 HOH HOH . 
N 5 HOH A 174 474 474 HOH HOH . 
N 5 HOH A 175 475 475 HOH HOH . 
N 5 HOH A 176 476 476 HOH HOH . 
N 5 HOH A 177 477 477 HOH HOH . 
N 5 HOH A 178 478 478 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 7.955 -1.348 40.7 0.59 50.02 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . K 4 8.632 -2.331 39.944 0.59 49.29 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . K 4 8.597 0.037 40.683 0.59 49.83 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . K 4 9.956 0.018 41.015 0.59 49.07 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . K 4 7.899 1.159 41.338 0.59 50.08 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . K 4 8.553 2.348 41.613 0.59 49.12 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           466 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#