data_1DKF
#
_model_server_result.job_id            l4rqJT5sqXe7O9dhZ4eBZA 
_model_server_result.datetime_utc      '2024-11-24 09:08:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dkf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    1DKF 
#
_exptl.entry_id    1DKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.528 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4-[(4,4-DIMETHYL-1,2,3,4-TETRAHYDRO-[1,2']BINAPTHALENYL-7-CARBONYL)-AMINO]-BENZOIC ACID" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DKF 
_cell.length_a            116.6 
_cell.length_b            116.6 
_cell.length_c            207.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H26 N2 O3' 
_chem_comp.formula_weight    450.528 
_chem_comp.id                BMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4-[(4,4-DIMETHYL-1,2,3,4-TETRAHYDRO-[1,2']BINAPTHALENYL-7-CARBONYL)-AMINO]-BENZOIC ACID" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C6 BMS doub 70 n y 
C5 C4 BMS sing 71 n y 
C5 N1 BMS sing 72 n n 
C6 C7 BMS sing 73 n y 
C6 H6 BMS sing 74 n n 
C7 C2 BMS doub 75 n y 
C7 H7 BMS sing 76 n n 
C2 C3 BMS sing 77 n y 
C2 C1 BMS sing 78 n n 
C3 C4 BMS doub 79 n y 
C3 H3 BMS sing 80 n n 
C4 H4 BMS sing 81 n n 
C1 O1 BMS sing 82 n n 
C1 O2 BMS doub 83 n n 
O1 HXT BMS sing 84 n n 
N1 C8 BMS sing 85 n n 
N1 H BMS sing 86 n n 
C8 C9 BMS sing 87 n n 
C8 O3 BMS doub 88 n n 
C9 C10 BMS doub 89 n y 
C9 C14 BMS sing 90 n y 
C10 C11 BMS sing 91 n y 
C10 H10 BMS sing 92 n n 
C11 C12 BMS doub 93 n y 
C11 C15 BMS sing 94 n n 
C12 C13 BMS sing 95 n y 
C12 C18 BMS sing 96 n n 
C13 C14 BMS doub 97 n y 
C13 H13 BMS sing 98 n n 
C14 H14 BMS sing 99 n n 
C15 C16 BMS sing 100 n n 
C15 C21 BMS sing 101 n n 
C15 H15 BMS sing 102 n n 
C16 C17 BMS sing 103 n n 
C16 H161 BMS sing 104 n n 
C16 H162 BMS sing 105 n n 
C17 C18 BMS sing 106 n n 
C17 H171 BMS sing 107 n n 
C17 H172 BMS sing 108 n n 
C18 C19 BMS sing 109 n n 
C18 C20 BMS sing 110 n n 
C19 H191 BMS sing 111 n n 
C19 H192 BMS sing 112 n n 
C19 H193 BMS sing 113 n n 
C20 H201 BMS sing 114 n n 
C20 H202 BMS sing 115 n n 
C20 H203 BMS sing 116 n n 
C21 C22 BMS doub 117 n y 
C21 C25 BMS sing 118 n y 
C22 N2 BMS sing 119 n y 
C22 H22 BMS sing 120 n n 
N2 C23 BMS doub 121 n y 
C23 C24 BMS sing 122 n y 
C23 C26 BMS sing 123 n y 
C24 C25 BMS doub 124 n y 
C24 C29 BMS sing 125 n y 
C25 H25 BMS sing 126 n n 
C26 C27 BMS doub 127 n y 
C26 H26 BMS sing 128 n n 
C27 C28 BMS sing 129 n y 
C27 H27 BMS sing 130 n n 
C28 C29 BMS doub 131 n y 
C28 H28 BMS sing 132 n n 
C29 H29 BMS sing 133 n n 
#
_atom_sites.entry_id                     1DKF 
_atom_sites.fract_transf_matrix[1][1]    0.008576 
_atom_sites.fract_transf_matrix[1][2]    0.004952 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OLA A 1 700 700 OLA OLI . 
D 4 BMS B 1 600 600 BMS BMS . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 8 8 HOH HOH . 
E 5 HOH A 6 9 9 HOH HOH . 
E 5 HOH A 7 13 13 HOH HOH . 
E 5 HOH A 8 15 15 HOH HOH . 
E 5 HOH A 9 16 16 HOH HOH . 
E 5 HOH A 10 18 18 HOH HOH . 
E 5 HOH A 11 19 19 HOH HOH . 
E 5 HOH A 12 21 21 HOH HOH . 
E 5 HOH A 13 22 22 HOH HOH . 
E 5 HOH A 14 24 24 HOH HOH . 
E 5 HOH A 15 26 26 HOH HOH . 
E 5 HOH A 16 30 30 HOH HOH . 
E 5 HOH A 17 31 31 HOH HOH . 
E 5 HOH A 18 32 32 HOH HOH . 
E 5 HOH A 19 34 34 HOH HOH . 
E 5 HOH A 20 35 35 HOH HOH . 
E 5 HOH A 21 39 39 HOH HOH . 
E 5 HOH A 22 41 41 HOH HOH . 
E 5 HOH A 23 42 42 HOH HOH . 
E 5 HOH A 24 43 43 HOH HOH . 
E 5 HOH A 25 44 44 HOH HOH . 
E 5 HOH A 26 45 45 HOH HOH . 
E 5 HOH A 27 49 49 HOH HOH . 
E 5 HOH A 28 50 50 HOH HOH . 
E 5 HOH A 29 51 51 HOH HOH . 
E 5 HOH A 30 52 52 HOH HOH . 
E 5 HOH A 31 55 55 HOH HOH . 
E 5 HOH A 32 58 58 HOH HOH . 
E 5 HOH A 33 62 62 HOH HOH . 
E 5 HOH A 34 65 65 HOH HOH . 
E 5 HOH A 35 66 66 HOH HOH . 
E 5 HOH A 36 73 73 HOH HOH . 
E 5 HOH A 37 74 74 HOH HOH . 
E 5 HOH A 38 76 76 HOH HOH . 
E 5 HOH A 39 78 78 HOH HOH . 
E 5 HOH A 40 82 82 HOH HOH . 
E 5 HOH A 41 85 85 HOH HOH . 
E 5 HOH A 42 86 86 HOH HOH . 
E 5 HOH A 43 87 87 HOH HOH . 
E 5 HOH A 44 88 88 HOH HOH . 
E 5 HOH A 45 89 89 HOH HOH . 
E 5 HOH A 46 90 90 HOH HOH . 
E 5 HOH A 47 91 91 HOH HOH . 
E 5 HOH A 48 92 92 HOH HOH . 
E 5 HOH A 49 93 93 HOH HOH . 
E 5 HOH A 50 94 94 HOH HOH . 
E 5 HOH A 51 95 95 HOH HOH . 
E 5 HOH A 52 96 96 HOH HOH . 
E 5 HOH A 53 97 97 HOH HOH . 
E 5 HOH A 54 98 98 HOH HOH . 
E 5 HOH A 55 99 99 HOH HOH . 
E 5 HOH A 56 100 100 HOH HOH . 
E 5 HOH A 57 101 101 HOH HOH . 
E 5 HOH A 58 102 102 HOH HOH . 
E 5 HOH A 59 103 103 HOH HOH . 
E 5 HOH A 60 104 104 HOH HOH . 
E 5 HOH A 61 105 105 HOH HOH . 
E 5 HOH A 62 106 106 HOH HOH . 
E 5 HOH A 63 107 107 HOH HOH . 
E 5 HOH A 64 110 110 HOH HOH . 
E 5 HOH A 65 111 111 HOH HOH . 
E 5 HOH A 66 112 112 HOH HOH . 
E 5 HOH A 67 113 113 HOH HOH . 
E 5 HOH A 68 146 146 HOH HOH . 
E 5 HOH A 69 147 147 HOH HOH . 
E 5 HOH A 70 148 148 HOH HOH . 
E 5 HOH A 71 149 149 HOH HOH . 
E 5 HOH A 72 150 150 HOH HOH . 
E 5 HOH A 73 151 151 HOH HOH . 
E 5 HOH A 74 152 152 HOH HOH . 
E 5 HOH A 75 153 153 HOH HOH . 
E 5 HOH A 76 154 154 HOH HOH . 
E 5 HOH A 77 155 155 HOH HOH . 
E 5 HOH A 78 156 156 HOH HOH . 
E 5 HOH A 79 157 157 HOH HOH . 
F 5 HOH B 1 6 6 HOH HOH . 
F 5 HOH B 2 7 7 HOH HOH . 
F 5 HOH B 3 10 10 HOH HOH . 
F 5 HOH B 4 11 11 HOH HOH . 
F 5 HOH B 5 12 12 HOH HOH . 
F 5 HOH B 6 14 14 HOH HOH . 
F 5 HOH B 7 17 17 HOH HOH . 
F 5 HOH B 8 20 20 HOH HOH . 
F 5 HOH B 9 23 23 HOH HOH . 
F 5 HOH B 10 25 25 HOH HOH . 
F 5 HOH B 11 27 27 HOH HOH . 
F 5 HOH B 12 28 28 HOH HOH . 
F 5 HOH B 13 29 29 HOH HOH . 
F 5 HOH B 14 33 33 HOH HOH . 
F 5 HOH B 15 36 36 HOH HOH . 
F 5 HOH B 16 37 37 HOH HOH . 
F 5 HOH B 17 38 38 HOH HOH . 
F 5 HOH B 18 40 40 HOH HOH . 
F 5 HOH B 19 46 46 HOH HOH . 
F 5 HOH B 20 47 47 HOH HOH . 
F 5 HOH B 21 48 48 HOH HOH . 
F 5 HOH B 22 53 53 HOH HOH . 
F 5 HOH B 23 54 54 HOH HOH . 
F 5 HOH B 24 56 56 HOH HOH . 
F 5 HOH B 25 57 57 HOH HOH . 
F 5 HOH B 26 59 59 HOH HOH . 
F 5 HOH B 27 60 60 HOH HOH . 
F 5 HOH B 28 61 61 HOH HOH . 
F 5 HOH B 29 63 63 HOH HOH . 
F 5 HOH B 30 64 64 HOH HOH . 
F 5 HOH B 31 67 67 HOH HOH . 
F 5 HOH B 32 68 68 HOH HOH . 
F 5 HOH B 33 69 69 HOH HOH . 
F 5 HOH B 34 70 70 HOH HOH . 
F 5 HOH B 35 71 71 HOH HOH . 
F 5 HOH B 36 72 72 HOH HOH . 
F 5 HOH B 37 75 75 HOH HOH . 
F 5 HOH B 38 77 77 HOH HOH . 
F 5 HOH B 39 79 79 HOH HOH . 
F 5 HOH B 40 80 80 HOH HOH . 
F 5 HOH B 41 81 81 HOH HOH . 
F 5 HOH B 42 83 83 HOH HOH . 
F 5 HOH B 43 84 84 HOH HOH . 
F 5 HOH B 44 108 108 HOH HOH . 
F 5 HOH B 45 109 109 HOH HOH . 
F 5 HOH B 46 114 114 HOH HOH . 
F 5 HOH B 47 115 115 HOH HOH . 
F 5 HOH B 48 116 116 HOH HOH . 
F 5 HOH B 49 117 117 HOH HOH . 
F 5 HOH B 50 118 118 HOH HOH . 
F 5 HOH B 51 119 119 HOH HOH . 
F 5 HOH B 52 120 120 HOH HOH . 
F 5 HOH B 53 121 121 HOH HOH . 
F 5 HOH B 54 122 122 HOH HOH . 
F 5 HOH B 55 123 123 HOH HOH . 
F 5 HOH B 56 124 124 HOH HOH . 
F 5 HOH B 57 125 125 HOH HOH . 
F 5 HOH B 58 126 126 HOH HOH . 
F 5 HOH B 59 127 127 HOH HOH . 
F 5 HOH B 60 128 128 HOH HOH . 
F 5 HOH B 61 129 129 HOH HOH . 
F 5 HOH B 62 130 130 HOH HOH . 
F 5 HOH B 63 131 131 HOH HOH . 
F 5 HOH B 64 132 132 HOH HOH . 
F 5 HOH B 65 133 133 HOH HOH . 
F 5 HOH B 66 134 134 HOH HOH . 
F 5 HOH B 67 135 135 HOH HOH . 
F 5 HOH B 68 136 136 HOH HOH . 
F 5 HOH B 69 137 137 HOH HOH . 
F 5 HOH B 70 138 138 HOH HOH . 
F 5 HOH B 71 139 139 HOH HOH . 
F 5 HOH B 72 140 140 HOH HOH . 
F 5 HOH B 73 141 141 HOH HOH . 
F 5 HOH B 74 142 142 HOH HOH . 
F 5 HOH B 75 143 143 HOH HOH . 
F 5 HOH B 76 144 144 HOH HOH . 
F 5 HOH B 77 145 145 HOH HOH . 
F 5 HOH B 78 158 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 BMS . . . D 4 -20.801 80.98 1.6 1 31.15 ? C5 BMS 600 B 1 
HETATM 2 C C6 BMS . . . D 4 -20.683 79.869 2.564 1 32.89 ? C6 BMS 600 B 1 
HETATM 3 C C7 BMS . . . D 4 -21.231 78.549 2.279 1 34.1 ? C7 BMS 600 B 1 
HETATM 4 C C2 BMS . . . D 4 -21.929 78.264 1.003 1 33.42 ? C2 BMS 600 B 1 
HETATM 5 C C3 BMS . . . D 4 -22.059 79.396 0.014 1 33.03 ? C3 BMS 600 B 1 
HETATM 6 C C4 BMS . . . D 4 -21.486 80.738 0.332 1 31.52 ? C4 BMS 600 B 1 
HETATM 7 C C1 BMS . . . D 4 -22.475 76.875 0.772 1 35.05 ? C1 BMS 600 B 1 
HETATM 8 O O1 BMS . . . D 4 -23.27 76.65 -0.267 1 37 ? O1 BMS 600 B 1 
HETATM 9 O O2 BMS . . . D 4 -22.117 75.931 1.633 1 36.49 ? O2 BMS 600 B 1 
HETATM 10 N N1 BMS . . . D 4 -20.269 82.224 1.901 1 30.51 ? N1 BMS 600 B 1 
HETATM 11 C C8 BMS . . . D 4 -18.921 82.476 2.178 1 31.51 ? C8 BMS 600 B 1 
HETATM 12 C C9 BMS . . . D 4 -18.427 83.753 1.829 1 29.85 ? C9 BMS 600 B 1 
HETATM 13 C C10 BMS . . . D 4 -19.296 84.765 1.225 1 28.92 ? C10 BMS 600 B 1 
HETATM 14 C C11 BMS . . . D 4 -18.73 86.116 0.855 1 28.9 ? C11 BMS 600 B 1 
HETATM 15 C C12 BMS . . . D 4 -17.233 86.405 1.121 1 29.41 ? C12 BMS 600 B 1 
HETATM 16 C C13 BMS . . . D 4 -16.396 85.335 1.747 1 29.47 ? C13 BMS 600 B 1 
HETATM 17 C C14 BMS . . . D 4 -16.971 84.06 2.088 1 29.42 ? C14 BMS 600 B 1 
HETATM 18 O O3 BMS . . . D 4 -18.128 81.623 2.708 1 33.19 ? O3 BMS 600 B 1 
HETATM 19 C C15 BMS . . . D 4 -19.566 87.263 0.21 1 31.5 ? C15 BMS 600 B 1 
HETATM 20 C C16 BMS . . . D 4 -18.937 88.365 -0.432 1 29.46 ? C16 BMS 600 B 1 
HETATM 21 C C17 BMS . . . D 4 -17.447 88.484 -0.524 1 30.53 ? C17 BMS 600 B 1 
HETATM 22 C C18 BMS . . . D 4 -16.667 87.819 0.718 1 30.5 ? C18 BMS 600 B 1 
HETATM 23 C C19 BMS . . . D 4 -16.814 88.788 1.926 1 30.42 ? C19 BMS 600 B 1 
HETATM 24 C C20 BMS . . . D 4 -15.186 87.719 0.248 1 29.83 ? C20 BMS 600 B 1 
HETATM 25 C C21 BMS . . . D 4 -20.964 87.299 0.213 1 34.84 ? C21 BMS 600 B 1 
HETATM 26 C C22 BMS . . . D 4 -21.601 87.387 1.591 1 35.79 ? C22 BMS 600 B 1 
HETATM 27 N N2 BMS . . . D 4 -22.985 87.432 1.779 1 38.24 ? N2 BMS 600 B 1 
HETATM 28 C C23 BMS . . . D 4 -23.866 87.389 0.679 1 37.84 ? C23 BMS 600 B 1 
HETATM 29 C C24 BMS . . . D 4 -23.235 87.303 -0.804 1 38 ? C24 BMS 600 B 1 
HETATM 30 C C25 BMS . . . D 4 -21.823 87.259 -0.988 1 35.33 ? C25 BMS 600 B 1 
HETATM 31 C C26 BMS . . . D 4 -25.304 87.438 0.876 1 39.27 ? C26 BMS 600 B 1 
HETATM 32 C C27 BMS . . . D 4 -26.165 87.396 -0.348 1 42.39 ? C27 BMS 600 B 1 
HETATM 33 C C28 BMS . . . D 4 -25.549 87.313 -1.779 1 40.79 ? C28 BMS 600 B 1 
HETATM 34 C C29 BMS . . . D 4 -24.063 87.265 -1.971 1 39.01 ? C29 BMS 600 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#