data_1DKK
#
_model_server_result.job_id            JEYEIKVCYYiH89qIMa9bkg 
_model_server_result.datetime_utc      '2024-10-12 12:26:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":131}' 
#
_entry.id    1DKK 
#
_exptl.entry_id    1DKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.6 
_cell.angle_gamma         90 
_cell.entry_id            1DKK 
_cell.length_a            28 
_cell.length_b            62.6 
_cell.length_c            60.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 64 B CYS 64 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1DKK 
_atom_sites.fract_transf_matrix[1][1]    0.035714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000998 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015974 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NO3 A 1 130 1 NO3 NO3 . 
D 2 NO3 B 1 130 2 NO3 NO3 . 
E 2 NO3 B 1 131 3 NO3 NO3 . 
F 2 NO3 B 1 132 4 NO3 NO3 . 
G 3 HOH A 1 131 2 HOH HOH . 
G 3 HOH A 2 132 7 HOH HOH . 
G 3 HOH A 3 133 9 HOH HOH . 
G 3 HOH A 4 134 11 HOH HOH . 
G 3 HOH A 5 135 14 HOH HOH . 
G 3 HOH A 6 136 16 HOH HOH . 
G 3 HOH A 7 137 17 HOH HOH . 
G 3 HOH A 8 138 18 HOH HOH . 
G 3 HOH A 9 139 19 HOH HOH . 
G 3 HOH A 10 140 20 HOH HOH . 
G 3 HOH A 11 141 23 HOH HOH . 
G 3 HOH A 12 142 29 HOH HOH . 
G 3 HOH A 13 143 32 HOH HOH . 
G 3 HOH A 14 144 34 HOH HOH . 
G 3 HOH A 15 145 35 HOH HOH . 
G 3 HOH A 16 146 36 HOH HOH . 
G 3 HOH A 17 147 37 HOH HOH . 
G 3 HOH A 18 148 38 HOH HOH . 
G 3 HOH A 19 149 44 HOH HOH . 
G 3 HOH A 20 150 45 HOH HOH . 
G 3 HOH A 21 151 46 HOH HOH . 
G 3 HOH A 22 152 48 HOH HOH . 
G 3 HOH A 23 153 49 HOH HOH . 
G 3 HOH A 24 154 50 HOH HOH . 
G 3 HOH A 25 155 51 HOH HOH . 
G 3 HOH A 26 156 52 HOH HOH . 
G 3 HOH A 27 157 64 HOH HOH . 
G 3 HOH A 28 158 65 HOH HOH . 
G 3 HOH A 29 159 66 HOH HOH . 
G 3 HOH A 30 160 68 HOH HOH . 
G 3 HOH A 31 161 74 HOH HOH . 
G 3 HOH A 32 162 75 HOH HOH . 
G 3 HOH A 33 163 78 HOH HOH . 
G 3 HOH A 34 164 79 HOH HOH . 
G 3 HOH A 35 165 81 HOH HOH . 
G 3 HOH A 36 166 83 HOH HOH . 
G 3 HOH A 37 167 85 HOH HOH . 
G 3 HOH A 38 168 86 HOH HOH . 
G 3 HOH A 39 169 90 HOH HOH . 
G 3 HOH A 40 170 94 HOH HOH . 
G 3 HOH A 41 171 95 HOH HOH . 
G 3 HOH A 42 172 96 HOH HOH . 
G 3 HOH A 43 173 97 HOH HOH . 
G 3 HOH A 44 174 98 HOH HOH . 
G 3 HOH A 45 175 103 HOH HOH . 
G 3 HOH A 46 176 104 HOH HOH . 
G 3 HOH A 47 177 107 HOH HOH . 
G 3 HOH A 48 178 109 HOH HOH . 
G 3 HOH A 49 179 111 HOH HOH . 
G 3 HOH A 50 180 112 HOH HOH . 
G 3 HOH A 51 181 114 HOH HOH . 
G 3 HOH A 52 182 115 HOH HOH . 
G 3 HOH A 53 183 118 HOH HOH . 
G 3 HOH A 54 184 119 HOH HOH . 
G 3 HOH A 55 185 120 HOH HOH . 
G 3 HOH A 56 186 121 HOH HOH . 
G 3 HOH A 57 187 123 HOH HOH . 
G 3 HOH A 58 188 125 HOH HOH . 
G 3 HOH A 59 189 126 HOH HOH . 
G 3 HOH A 60 190 128 HOH HOH . 
G 3 HOH A 61 191 131 HOH HOH . 
G 3 HOH A 62 192 132 HOH HOH . 
G 3 HOH A 63 193 134 HOH HOH . 
G 3 HOH A 64 194 135 HOH HOH . 
G 3 HOH A 65 195 137 HOH HOH . 
G 3 HOH A 66 196 138 HOH HOH . 
G 3 HOH A 67 197 139 HOH HOH . 
G 3 HOH A 68 198 140 HOH HOH . 
G 3 HOH A 69 199 142 HOH HOH . 
G 3 HOH A 70 200 143 HOH HOH . 
G 3 HOH A 71 201 145 HOH HOH . 
G 3 HOH A 72 202 146 HOH HOH . 
G 3 HOH A 73 203 148 HOH HOH . 
G 3 HOH A 74 204 149 HOH HOH . 
H 3 HOH B 1 133 1 HOH HOH . 
H 3 HOH B 2 134 3 HOH HOH . 
H 3 HOH B 3 135 4 HOH HOH . 
H 3 HOH B 4 136 5 HOH HOH . 
H 3 HOH B 5 137 6 HOH HOH . 
H 3 HOH B 6 138 8 HOH HOH . 
H 3 HOH B 7 139 10 HOH HOH . 
H 3 HOH B 8 140 12 HOH HOH . 
H 3 HOH B 9 141 13 HOH HOH . 
H 3 HOH B 10 142 15 HOH HOH . 
H 3 HOH B 11 143 21 HOH HOH . 
H 3 HOH B 12 144 22 HOH HOH . 
H 3 HOH B 13 145 24 HOH HOH . 
H 3 HOH B 14 146 25 HOH HOH . 
H 3 HOH B 15 147 26 HOH HOH . 
H 3 HOH B 16 148 27 HOH HOH . 
H 3 HOH B 17 149 28 HOH HOH . 
H 3 HOH B 18 150 30 HOH HOH . 
H 3 HOH B 19 151 31 HOH HOH . 
H 3 HOH B 20 152 33 HOH HOH . 
H 3 HOH B 21 153 39 HOH HOH . 
H 3 HOH B 22 154 40 HOH HOH . 
H 3 HOH B 23 155 41 HOH HOH . 
H 3 HOH B 24 156 42 HOH HOH . 
H 3 HOH B 25 157 43 HOH HOH . 
H 3 HOH B 26 158 47 HOH HOH . 
H 3 HOH B 27 159 53 HOH HOH . 
H 3 HOH B 28 160 54 HOH HOH . 
H 3 HOH B 29 161 55 HOH HOH . 
H 3 HOH B 30 162 56 HOH HOH . 
H 3 HOH B 31 163 57 HOH HOH . 
H 3 HOH B 32 164 58 HOH HOH . 
H 3 HOH B 33 165 59 HOH HOH . 
H 3 HOH B 34 166 60 HOH HOH . 
H 3 HOH B 35 167 61 HOH HOH . 
H 3 HOH B 36 168 62 HOH HOH . 
H 3 HOH B 37 169 63 HOH HOH . 
H 3 HOH B 38 170 67 HOH HOH . 
H 3 HOH B 39 171 69 HOH HOH . 
H 3 HOH B 40 172 70 HOH HOH . 
H 3 HOH B 41 173 71 HOH HOH . 
H 3 HOH B 42 174 72 HOH HOH . 
H 3 HOH B 43 175 73 HOH HOH . 
H 3 HOH B 44 176 76 HOH HOH . 
H 3 HOH B 45 177 77 HOH HOH . 
H 3 HOH B 46 178 80 HOH HOH . 
H 3 HOH B 47 179 82 HOH HOH . 
H 3 HOH B 48 180 84 HOH HOH . 
H 3 HOH B 49 181 87 HOH HOH . 
H 3 HOH B 50 182 88 HOH HOH . 
H 3 HOH B 51 183 89 HOH HOH . 
H 3 HOH B 52 184 91 HOH HOH . 
H 3 HOH B 53 185 92 HOH HOH . 
H 3 HOH B 54 186 93 HOH HOH . 
H 3 HOH B 55 187 99 HOH HOH . 
H 3 HOH B 56 188 100 HOH HOH . 
H 3 HOH B 57 189 101 HOH HOH . 
H 3 HOH B 58 190 102 HOH HOH . 
H 3 HOH B 59 191 105 HOH HOH . 
H 3 HOH B 60 192 106 HOH HOH . 
H 3 HOH B 61 193 108 HOH HOH . 
H 3 HOH B 62 194 110 HOH HOH . 
H 3 HOH B 63 195 113 HOH HOH . 
H 3 HOH B 64 196 116 HOH HOH . 
H 3 HOH B 65 197 117 HOH HOH . 
H 3 HOH B 66 198 122 HOH HOH . 
H 3 HOH B 67 199 124 HOH HOH . 
H 3 HOH B 68 200 127 HOH HOH . 
H 3 HOH B 69 201 129 HOH HOH . 
H 3 HOH B 70 202 130 HOH HOH . 
H 3 HOH B 71 203 133 HOH HOH . 
H 3 HOH B 72 204 136 HOH HOH . 
H 3 HOH B 73 205 141 HOH HOH . 
H 3 HOH B 74 206 144 HOH HOH . 
H 3 HOH B 75 207 147 HOH HOH . 
H 3 HOH B 76 208 150 HOH HOH . 
H 3 HOH B 77 209 151 HOH HOH . 
H 3 HOH B 78 210 152 HOH HOH . 
H 3 HOH B 79 211 153 HOH HOH . 
H 3 HOH B 80 212 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . E 2 19.098 24.847 68.814 1 37.89 ? N NO3 131 B 1 
HETATM 2 O O1 NO3 . . . E 2 18.902 24.755 70.022 1 38.16 ? O1 NO3 131 B 1 
HETATM 3 O O2 NO3 . . . E 2 20.126 25.358 68.382 1 38.68 ? O2 NO3 131 B 1 
HETATM 4 O O3 NO3 . . . E 2 18.272 24.413 68.034 1 39.39 ? O3 NO3 131 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#