data_1DKR # _model_server_result.job_id uh5ujA1BsgjUL9BgFdtTnQ _model_server_result.datetime_utc '2024-11-23 07:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 1DKR # _exptl.entry_id 1DKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DKR _cell.length_a 115.61 _cell.length_b 115.61 _cell.length_c 107.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 57.805 100.121197 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -57.805 100.121197 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1DKR _atom_sites.fract_transf_matrix[1][1] 0.00865 _atom_sites.fract_transf_matrix[1][2] 0.00499 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1002 2 SO4 SO4 . D 2 SO4 A 1 1004 4 SO4 SO4 . E 2 SO4 B 1 1001 1 SO4 SO4 . F 2 SO4 B 1 1003 3 SO4 SO4 . G 3 HOH A 1 1005 2 HOH H2O . G 3 HOH A 2 1006 3 HOH H2O . G 3 HOH A 3 1007 4 HOH H2O . G 3 HOH A 4 1008 5 HOH H2O . G 3 HOH A 5 1009 6 HOH H2O . G 3 HOH A 6 1010 14 HOH H2O . G 3 HOH A 7 1011 15 HOH H2O . G 3 HOH A 8 1012 16 HOH H2O . G 3 HOH A 9 1013 17 HOH H2O . G 3 HOH A 10 1014 18 HOH H2O . G 3 HOH A 11 1015 19 HOH H2O . G 3 HOH A 12 1016 38 HOH H2O . G 3 HOH A 13 1017 39 HOH H2O . G 3 HOH A 14 1018 40 HOH H2O . G 3 HOH A 15 1019 41 HOH H2O . G 3 HOH A 16 1020 42 HOH H2O . G 3 HOH A 17 1021 43 HOH H2O . G 3 HOH A 18 1022 44 HOH H2O . G 3 HOH A 19 1023 45 HOH H2O . G 3 HOH A 20 1024 46 HOH H2O . G 3 HOH A 21 1025 48 HOH H2O . G 3 HOH A 22 1026 51 HOH H2O . G 3 HOH A 23 1027 55 HOH H2O . G 3 HOH A 24 1028 56 HOH H2O . G 3 HOH A 25 1029 67 HOH H2O . G 3 HOH A 26 1030 68 HOH H2O . G 3 HOH A 27 1031 69 HOH H2O . G 3 HOH A 28 1032 70 HOH H2O . G 3 HOH A 29 1033 71 HOH H2O . G 3 HOH A 30 1034 72 HOH H2O . G 3 HOH A 31 1035 73 HOH H2O . G 3 HOH A 32 1036 74 HOH H2O . G 3 HOH A 33 1037 75 HOH H2O . G 3 HOH A 34 1038 76 HOH H2O . G 3 HOH A 35 1039 77 HOH H2O . G 3 HOH A 36 1040 79 HOH H2O . G 3 HOH A 37 1041 80 HOH H2O . G 3 HOH A 38 1042 81 HOH H2O . G 3 HOH A 39 1043 82 HOH H2O . G 3 HOH A 40 1044 83 HOH H2O . G 3 HOH A 41 1045 87 HOH H2O . G 3 HOH A 42 1046 88 HOH H2O . G 3 HOH A 43 1047 89 HOH H2O . G 3 HOH A 44 1048 91 HOH H2O . G 3 HOH A 45 1049 93 HOH H2O . G 3 HOH A 46 1050 94 HOH H2O . G 3 HOH A 47 1051 95 HOH H2O . G 3 HOH A 48 1052 96 HOH H2O . G 3 HOH A 49 1053 97 HOH H2O . G 3 HOH A 50 1054 99 HOH H2O . G 3 HOH A 51 1055 101 HOH H2O . G 3 HOH A 52 1056 104 HOH H2O . G 3 HOH A 53 1057 105 HOH H2O . G 3 HOH A 54 1058 106 HOH H2O . G 3 HOH A 55 1059 109 HOH H2O . G 3 HOH A 56 1060 118 HOH H2O . G 3 HOH A 57 1061 120 HOH H2O . G 3 HOH A 58 1062 122 HOH H2O . G 3 HOH A 59 1063 123 HOH H2O . G 3 HOH A 60 1064 126 HOH H2O . G 3 HOH A 61 1065 127 HOH H2O . G 3 HOH A 62 1066 128 HOH H2O . G 3 HOH A 63 1067 129 HOH H2O . G 3 HOH A 64 1068 130 HOH H2O . G 3 HOH A 65 1069 131 HOH H2O . G 3 HOH A 66 1070 136 HOH H2O . G 3 HOH A 67 1071 137 HOH H2O . G 3 HOH A 68 1072 138 HOH H2O . G 3 HOH A 69 1073 139 HOH H2O . G 3 HOH A 70 1074 142 HOH H2O . G 3 HOH A 71 1075 143 HOH H2O . G 3 HOH A 72 1076 144 HOH H2O . G 3 HOH A 73 1077 145 HOH H2O . G 3 HOH A 74 1078 146 HOH H2O . G 3 HOH A 75 1079 147 HOH H2O . G 3 HOH A 76 1080 148 HOH H2O . G 3 HOH A 77 1081 149 HOH H2O . G 3 HOH A 78 1082 150 HOH H2O . G 3 HOH A 79 1083 161 HOH H2O . G 3 HOH A 80 1084 162 HOH H2O . G 3 HOH A 81 1085 163 HOH H2O . G 3 HOH A 82 1086 164 HOH H2O . G 3 HOH A 83 1087 165 HOH H2O . G 3 HOH A 84 1088 166 HOH H2O . G 3 HOH A 85 1089 167 HOH H2O . G 3 HOH A 86 1090 169 HOH H2O . G 3 HOH A 87 1091 170 HOH H2O . G 3 HOH A 88 1092 171 HOH H2O . G 3 HOH A 89 1093 172 HOH H2O . G 3 HOH A 90 1094 173 HOH H2O . G 3 HOH A 91 1095 174 HOH H2O . G 3 HOH A 92 1096 175 HOH H2O . G 3 HOH A 93 1097 177 HOH H2O . G 3 HOH A 94 1098 184 HOH H2O . G 3 HOH A 95 1099 187 HOH H2O . G 3 HOH A 96 1100 190 HOH H2O . G 3 HOH A 97 1101 191 HOH H2O . G 3 HOH A 98 1102 197 HOH H2O . G 3 HOH A 99 1103 198 HOH H2O . G 3 HOH A 100 1104 199 HOH H2O . G 3 HOH A 101 1105 200 HOH H2O . G 3 HOH A 102 1106 201 HOH H2O . G 3 HOH A 103 1107 202 HOH H2O . G 3 HOH A 104 1108 207 HOH H2O . G 3 HOH A 105 1109 208 HOH H2O . G 3 HOH A 106 1110 209 HOH H2O . G 3 HOH A 107 1111 210 HOH H2O . G 3 HOH A 108 1112 211 HOH H2O . G 3 HOH A 109 1113 213 HOH H2O . G 3 HOH A 110 1114 214 HOH H2O . G 3 HOH A 111 1115 215 HOH H2O . G 3 HOH A 112 1116 216 HOH H2O . G 3 HOH A 113 1117 217 HOH H2O . G 3 HOH A 114 1118 218 HOH H2O . G 3 HOH A 115 1119 222 HOH H2O . G 3 HOH A 116 1120 229 HOH H2O . G 3 HOH A 117 1121 230 HOH H2O . H 3 HOH B 1 1004 1 HOH H2O . H 3 HOH B 2 1005 7 HOH H2O . H 3 HOH B 3 1006 8 HOH H2O . H 3 HOH B 4 1007 9 HOH H2O . H 3 HOH B 5 1008 10 HOH H2O . H 3 HOH B 6 1009 11 HOH H2O . H 3 HOH B 7 1010 12 HOH H2O . H 3 HOH B 8 1011 13 HOH H2O . H 3 HOH B 9 1012 20 HOH H2O . H 3 HOH B 10 1013 21 HOH H2O . H 3 HOH B 11 1014 22 HOH H2O . H 3 HOH B 12 1015 23 HOH H2O . H 3 HOH B 13 1016 24 HOH H2O . H 3 HOH B 14 1017 25 HOH H2O . H 3 HOH B 15 1018 26 HOH H2O . H 3 HOH B 16 1019 27 HOH H2O . H 3 HOH B 17 1020 28 HOH H2O . H 3 HOH B 18 1021 29 HOH H2O . H 3 HOH B 19 1022 30 HOH H2O . H 3 HOH B 20 1023 31 HOH H2O . H 3 HOH B 21 1024 32 HOH H2O . H 3 HOH B 22 1025 33 HOH H2O . H 3 HOH B 23 1026 34 HOH H2O . H 3 HOH B 24 1027 35 HOH H2O . H 3 HOH B 25 1028 36 HOH H2O . H 3 HOH B 26 1029 37 HOH H2O . H 3 HOH B 27 1030 47 HOH H2O . H 3 HOH B 28 1031 49 HOH H2O . H 3 HOH B 29 1032 50 HOH H2O . H 3 HOH B 30 1033 52 HOH H2O . H 3 HOH B 31 1034 53 HOH H2O . H 3 HOH B 32 1035 54 HOH H2O . H 3 HOH B 33 1036 57 HOH H2O . H 3 HOH B 34 1037 58 HOH H2O . H 3 HOH B 35 1038 59 HOH H2O . H 3 HOH B 36 1039 60 HOH H2O . H 3 HOH B 37 1040 61 HOH H2O . H 3 HOH B 38 1041 62 HOH H2O . H 3 HOH B 39 1042 63 HOH H2O . H 3 HOH B 40 1043 64 HOH H2O . H 3 HOH B 41 1044 65 HOH H2O . H 3 HOH B 42 1045 66 HOH H2O . H 3 HOH B 43 1046 78 HOH H2O . H 3 HOH B 44 1047 84 HOH H2O . H 3 HOH B 45 1048 85 HOH H2O . H 3 HOH B 46 1049 86 HOH H2O . H 3 HOH B 47 1050 90 HOH H2O . H 3 HOH B 48 1051 92 HOH H2O . H 3 HOH B 49 1052 98 HOH H2O . H 3 HOH B 50 1053 100 HOH H2O . H 3 HOH B 51 1054 102 HOH H2O . H 3 HOH B 52 1055 103 HOH H2O . H 3 HOH B 53 1056 107 HOH H2O . H 3 HOH B 54 1057 108 HOH H2O . H 3 HOH B 55 1058 110 HOH H2O . H 3 HOH B 56 1059 111 HOH H2O . H 3 HOH B 57 1060 112 HOH H2O . H 3 HOH B 58 1061 113 HOH H2O . H 3 HOH B 59 1062 114 HOH H2O . H 3 HOH B 60 1063 115 HOH H2O . H 3 HOH B 61 1064 116 HOH H2O . H 3 HOH B 62 1065 117 HOH H2O . H 3 HOH B 63 1066 119 HOH H2O . H 3 HOH B 64 1067 121 HOH H2O . H 3 HOH B 65 1068 124 HOH H2O . H 3 HOH B 66 1069 125 HOH H2O . H 3 HOH B 67 1070 132 HOH H2O . H 3 HOH B 68 1071 133 HOH H2O . H 3 HOH B 69 1072 134 HOH H2O . H 3 HOH B 70 1073 135 HOH H2O . H 3 HOH B 71 1074 140 HOH H2O . H 3 HOH B 72 1075 141 HOH H2O . H 3 HOH B 73 1076 151 HOH H2O . H 3 HOH B 74 1077 152 HOH H2O . H 3 HOH B 75 1078 153 HOH H2O . H 3 HOH B 76 1079 154 HOH H2O . H 3 HOH B 77 1080 155 HOH H2O . H 3 HOH B 78 1081 156 HOH H2O . H 3 HOH B 79 1082 157 HOH H2O . H 3 HOH B 80 1083 158 HOH H2O . H 3 HOH B 81 1084 159 HOH H2O . H 3 HOH B 82 1085 160 HOH H2O . H 3 HOH B 83 1086 168 HOH H2O . H 3 HOH B 84 1087 176 HOH H2O . H 3 HOH B 85 1088 178 HOH H2O . H 3 HOH B 86 1089 179 HOH H2O . H 3 HOH B 87 1090 180 HOH H2O . H 3 HOH B 88 1091 181 HOH H2O . H 3 HOH B 89 1092 182 HOH H2O . H 3 HOH B 90 1093 183 HOH H2O . H 3 HOH B 91 1094 185 HOH H2O . H 3 HOH B 92 1095 186 HOH H2O . H 3 HOH B 93 1096 188 HOH H2O . H 3 HOH B 94 1097 189 HOH H2O . H 3 HOH B 95 1098 192 HOH H2O . H 3 HOH B 96 1099 193 HOH H2O . H 3 HOH B 97 1100 194 HOH H2O . H 3 HOH B 98 1101 195 HOH H2O . H 3 HOH B 99 1102 196 HOH H2O . H 3 HOH B 100 1103 203 HOH H2O . H 3 HOH B 101 1104 204 HOH H2O . H 3 HOH B 102 1105 205 HOH H2O . H 3 HOH B 103 1106 206 HOH H2O . H 3 HOH B 104 1107 212 HOH H2O . H 3 HOH B 105 1108 219 HOH H2O . H 3 HOH B 106 1109 220 HOH H2O . H 3 HOH B 107 1110 221 HOH H2O . H 3 HOH B 108 1111 223 HOH H2O . H 3 HOH B 109 1112 224 HOH H2O . H 3 HOH B 110 1113 225 HOH H2O . H 3 HOH B 111 1114 226 HOH H2O . H 3 HOH B 112 1115 227 HOH H2O . H 3 HOH B 113 1116 228 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 2 28.307 40.224 52.859 1 26.52 ? S SO4 1001 B 1 HETATM 2 O O1 SO4 . . . E 2 29.493 39.839 52.054 1 27.51 ? O1 SO4 1001 B 1 HETATM 3 O O2 SO4 . . . E 2 28.483 39.738 54.272 1 25.32 ? O2 SO4 1001 B 1 HETATM 4 O O3 SO4 . . . E 2 28.22 41.699 52.873 1 25.25 ? O3 SO4 1001 B 1 HETATM 5 O O4 SO4 . . . E 2 27.083 39.639 52.261 1 26.45 ? O4 SO4 1001 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #