data_1DKT # _model_server_result.job_id x5WkdtszBvZmS_joO39LHg _model_server_result.datetime_utc '2024-11-04 22:44:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1DKT # _exptl.entry_id 1DKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.579 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'META VANADATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DKT _cell.length_a 94 _cell.length_b 94 _cell.length_c 131.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O19 V7' _chem_comp.formula_weight 660.579 _chem_comp.id V7O _chem_comp.mon_nstd_flag . _chem_comp.name 'META VANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag V1 O1 V7O doub 345 n n V1 O2 V7O doub 346 n n V1 O3 V7O doub 347 n n V1 O4 V7O sing 348 n n V2 O4 V7O sing 349 n n V2 O5 V7O doub 350 n n V2 O6 V7O doub 351 n n V3 O4 V7O sing 352 n n V3 O7 V7O doub 353 n n V3 O8 V7O doub 354 n n V3 O9 V7O sing 355 n n V4 O9 V7O sing 356 n n V4 O10 V7O doub 357 n n V4 O11 V7O doub 358 n n V4 O12 V7O sing 359 n n V5 O12 V7O sing 360 n n V5 O13 V7O doub 361 n n V5 O14 V7O sing 362 n n V6 O14 V7O sing 363 n n V6 O15 V7O doub 364 n n V6 O16 V7O doub 365 n n V7 O14 V7O sing 366 n n V7 O17 V7O doub 367 n n V7 O18 V7O doub 368 n n V7 O19 V7O doub 369 n n # _atom_sites.entry_id 1DKT _atom_sites.fract_transf_matrix[1][1] 0.010638 _atom_sites.fract_transf_matrix[1][2] 0.006142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V7O A 1 100 100 V7O V7O . D 3 HOH A 1 511 511 HOH HOH . D 3 HOH A 2 513 513 HOH HOH . D 3 HOH A 3 516 516 HOH HOH . D 3 HOH A 4 519 519 HOH HOH . D 3 HOH A 5 520 520 HOH HOH . D 3 HOH A 6 523 523 HOH HOH . D 3 HOH A 7 524 524 HOH HOH . D 3 HOH A 8 525 525 HOH HOH . D 3 HOH A 9 526 526 HOH HOH . D 3 HOH A 10 527 527 HOH HOH . D 3 HOH A 11 530 530 HOH HOH . D 3 HOH A 12 531 531 HOH HOH . D 3 HOH A 13 532 532 HOH HOH . D 3 HOH A 14 533 533 HOH HOH . D 3 HOH A 15 534 534 HOH HOH . D 3 HOH A 16 535 535 HOH HOH . D 3 HOH A 17 536 536 HOH HOH . D 3 HOH A 18 537 537 HOH HOH . D 3 HOH A 19 541 541 HOH HOH . D 3 HOH A 20 543 543 HOH HOH . D 3 HOH A 21 545 545 HOH HOH . D 3 HOH A 22 546 546 HOH HOH . D 3 HOH A 23 547 547 HOH HOH . D 3 HOH A 24 551 551 HOH HOH . D 3 HOH A 25 552 552 HOH HOH . D 3 HOH A 26 553 553 HOH HOH . D 3 HOH A 27 556 556 HOH HOH . D 3 HOH A 28 557 557 HOH HOH . D 3 HOH A 29 558 558 HOH HOH . D 3 HOH A 30 559 559 HOH HOH . D 3 HOH A 31 560 560 HOH HOH . D 3 HOH A 32 561 561 HOH HOH . D 3 HOH A 33 562 562 HOH HOH . D 3 HOH A 34 565 565 HOH HOH . D 3 HOH A 35 566 566 HOH HOH . D 3 HOH A 36 567 567 HOH HOH . D 3 HOH A 37 568 568 HOH HOH . D 3 HOH A 38 569 569 HOH HOH . D 3 HOH A 39 570 570 HOH HOH . D 3 HOH A 40 571 571 HOH HOH . D 3 HOH A 41 572 572 HOH HOH . D 3 HOH A 42 581 581 HOH HOH . D 3 HOH A 43 582 582 HOH HOH . D 3 HOH A 44 583 583 HOH HOH . D 3 HOH A 45 584 584 HOH HOH . E 3 HOH B 1 501 501 HOH HOH . E 3 HOH B 2 503 503 HOH HOH . E 3 HOH B 3 505 505 HOH HOH . E 3 HOH B 4 508 508 HOH HOH . E 3 HOH B 5 512 512 HOH HOH . E 3 HOH B 6 538 538 HOH HOH . E 3 HOH B 7 539 539 HOH HOH . E 3 HOH B 8 555 555 HOH HOH . E 3 HOH B 9 573 573 HOH HOH . E 3 HOH B 10 574 574 HOH HOH . E 3 HOH B 11 575 575 HOH HOH . E 3 HOH B 12 576 576 HOH HOH . E 3 HOH B 13 578 578 HOH HOH . E 3 HOH B 14 579 579 HOH HOH . E 3 HOH B 15 585 585 HOH HOH . E 3 HOH B 16 586 586 HOH HOH . E 3 HOH B 17 587 587 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 V V1 V7O . . . C 2 -31.884 67.514 18.91 1 18.1 ? V1 V7O 100 A 1 HETATM 2 V V2 V7O . . . C 2 -30.033 69.072 17.126 1 22.09 ? V2 V7O 100 A 1 HETATM 3 V V3 V7O . . . C 2 -28.956 66.399 18.365 1 17.76 ? V3 V7O 100 A 1 HETATM 4 V V4 V7O . . . C 2 -26.201 66.586 20.226 1 21.23 ? V4 V7O 100 A 1 HETATM 5 V V5 V7O . . . C 2 -26.177 68.348 22.724 1 21.88 ? V5 V7O 100 A 1 HETATM 6 V V6 V7O . . . C 2 -24.934 70.759 21.279 1 16.79 ? V6 V7O 100 A 1 HETATM 7 V V7 V7O . . . C 2 -26.909 71.382 23.176 1 22.85 ? V7 V7O 100 A 1 HETATM 8 O O1 V7O . . . C 2 -33.407 67.959 18.515 1 37.85 ? O1 V7O 100 A 1 HETATM 9 O O2 V7O . . . C 2 -30.923 68.513 19.899 1 18.5 ? O2 V7O 100 A 1 HETATM 10 O O3 V7O . . . C 2 -31.748 66.912 20.299 1 24.87 ? O3 V7O 100 A 1 HETATM 11 O O4 V7O . . . C 2 -30.238 67.67 18.359 1 18.13 ? O4 V7O 100 A 1 HETATM 12 O O5 V7O . . . C 2 -28.571 69.618 17.058 1 27.85 ? O5 V7O 100 A 1 HETATM 13 O O6 V7O . . . C 2 -30.011 70.553 17.666 1 25.29 ? O6 V7O 100 A 1 HETATM 14 O O7 V7O . . . C 2 -29.049 64.809 18.964 1 23.41 ? O7 V7O 100 A 1 HETATM 15 O O8 V7O . . . C 2 -27.85 66.58 17.303 1 5.27 ? O8 V7O 100 A 1 HETATM 16 O O9 V7O . . . C 2 -27.462 67.008 18.997 1 10.73 ? O9 V7O 100 A 1 HETATM 17 O O10 V7O . . . C 2 -25.428 65.369 19.815 1 27.17 ? O10 V7O 100 A 1 HETATM 18 O O11 V7O . . . C 2 -24.951 67.016 19.557 1 7.1 ? O11 V7O 100 A 1 HETATM 19 O O12 V7O . . . C 2 -25.383 67.36 21.57 1 4.66 ? O12 V7O 100 A 1 HETATM 20 O O13 V7O . . . C 2 -25.374 67.972 23.975 1 2 ? O13 V7O 100 A 1 HETATM 21 O O14 V7O . . . C 2 -25.977 70.068 22.551 1 17.73 ? O14 V7O 100 A 1 HETATM 22 O O15 V7O . . . C 2 -23.715 69.998 21.714 1 17.98 ? O15 V7O 100 A 1 HETATM 23 O O16 V7O . . . C 2 -24.362 69.907 20.147 1 20 ? O16 V7O 100 A 1 HETATM 24 O O17 V7O . . . C 2 -28.445 70.726 22.748 1 22.12 ? O17 V7O 100 A 1 HETATM 25 O O18 V7O . . . C 2 -27.339 72.184 22.033 1 18.58 ? O18 V7O 100 A 1 HETATM 26 O O19 V7O . . . C 2 -27.615 71.674 24.52 1 28.53 ? O19 V7O 100 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #