data_1DL4 # _model_server_result.job_id vp8bIE1Nei_IL3P1iameGw _model_server_result.datetime_utc '2024-10-18 15:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":12}' # _entry.id 1DL4 # _exptl.entry_id 1DL4 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 280.318 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1R,2S,3R,4S-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DL4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N6 DA 6 A DA 6 1_555 C C4C BZA . A BZA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 11 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 11 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 11 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 10 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 10 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 10 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 9 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 9 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 9 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 A DA 4 1_555 B N3 DT 8 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 A DA 4 1_555 B O4 DT 8 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DA MISPAIR' hydrog12 A N3 DC 5 A DC 5 1_555 A N6 DA 6 A DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 7 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 7 A DA 7 1_555 B N3 DT 5 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 7 A DA 7 1_555 B O4 DT 5 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 8 A DG 8 1_555 B N3 DC 4 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 8 A DG 8 1_555 B O2 DC 4 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 8 A DG 8 1_555 B N4 DC 4 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog21 A N2 DG 8 A DG 8 1_555 B O2 DT 5 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 9 A DA 9 1_555 B N3 DT 3 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 9 A DA 9 1_555 B O4 DT 3 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 10 A DA 10 1_555 B N3 DT 2 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 10 A DA 10 1_555 B O4 DT 2 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 11 A DG 11 1_555 B N3 DC 1 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 11 A DG 11 1_555 B O2 DC 1 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 11 A DG 11 1_555 B N4 DC 1 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H16 O3' _chem_comp.formula_weight 280.318 _chem_comp.id BZA _chem_comp.mon_nstd_flag . _chem_comp.name 1R,2S,3R,4S-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4C C9C BZA sing 1 n n C4C C4A BZA sing 2 n n C4C H4C1 BZA sing 3 n n C4C H4C2 BZA sing 4 n n C9C O3 BZA sing 5 n n C9C C8B BZA sing 6 n n C9C H9C BZA sing 7 n n O3 H3 BZA sing 8 n n C8B O2 BZA sing 9 n n C8B C3B BZA sing 10 n n C8B H8B BZA sing 11 n n O2 HO2 BZA sing 12 n n C3B O1 BZA sing 13 n n C3B C3A BZA sing 14 n n C3B H3B BZA sing 15 n n O1 H1 BZA sing 16 n n C3A C2A BZA doub 17 n y C3A C4A BZA sing 18 n y C2A C1A BZA sing 19 n y C2A H2A BZA sing 20 n n C4A C4B BZA doub 21 n y C1A C11 BZA doub 22 n y C1A H1A BZA sing 23 n n C5A C4B BZA sing 24 n y C5A C5B BZA doub 25 n y C5A H5A BZA sing 26 n n C4B C11 BZA sing 27 n y C6A C7A BZA doub 28 n y C6A C5B BZA sing 29 n y C6A H6A BZA sing 30 n n C7A C8A BZA sing 31 n y C7A H7A BZA sing 32 n n C8A C9A BZA doub 33 n y C8A H8A BZA sing 34 n n C5B C9B BZA sing 35 n y C9B C9A BZA sing 36 n y C9B C10 BZA doub 37 n y C11 C10 BZA sing 38 n y C9A H9A BZA sing 39 n n C10 H10 BZA sing 40 n n # _atom_sites.entry_id 1DL4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BZA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 12 _pdbx_nonpoly_scheme.auth_seq_num 6 _pdbx_nonpoly_scheme.pdb_mon_id BZA _pdbx_nonpoly_scheme.auth_mon_id ABA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4C BZA . . . C 3 -0.132 -0.88 -1.553 1 0.33 ? C4C BZA 12 A 1 HETATM 2 C C9C BZA . . . C 3 -0.26 -1.73 -2.822 1 0.39 ? C9C BZA 12 A 1 HETATM 3 O O3 BZA . . . C 3 -0.567 -3.083 -2.474 1 0.42 ? O3 BZA 12 A 1 HETATM 4 C C8B BZA . . . C 3 -1.324 -1.175 -3.758 1 0.38 ? C8B BZA 12 A 1 HETATM 5 O O2 BZA . . . C 3 -1.051 0.192 -4.085 1 0.39 ? O2 BZA 12 A 1 HETATM 6 C C3B BZA . . . C 3 -2.694 -1.305 -3.12 1 0.33 ? C3B BZA 12 A 1 HETATM 7 O O1 BZA . . . C 3 -3.698 -0.753 -3.976 1 0.34 ? O1 BZA 12 A 1 HETATM 8 C C3A BZA . . . C 3 -2.707 -0.572 -1.799 1 0.28 ? C3A BZA 12 A 1 HETATM 9 C C2A BZA . . . C 3 -3.946 -0.08 -1.294 1 0.26 ? C2A BZA 12 A 1 HETATM 10 C C4A BZA . . . C 3 -1.496 -0.367 -1.053 1 0.29 ? C4A BZA 12 A 1 HETATM 11 C C1A BZA . . . C 3 -3.993 0.606 -0.07 1 0.25 ? C1A BZA 12 A 1 HETATM 12 C C5A BZA . . . C 3 -0.396 0.569 0.954 1 0.27 ? C5A BZA 12 A 1 HETATM 13 C C4B BZA . . . C 3 -1.566 0.335 0.188 1 0.26 ? C4B BZA 12 A 1 HETATM 14 C C6A BZA . . . C 3 0.702 1.508 2.903 1 0.27 ? C6A BZA 12 A 1 HETATM 15 C C7A BZA . . . C 3 0.642 2.217 4.114 1 0.27 ? C7A BZA 12 A 1 HETATM 16 C C8A BZA . . . C 3 -0.608 2.696 4.591 1 0.28 ? C8A BZA 12 A 1 HETATM 17 C C5B BZA . . . C 3 -0.473 1.271 2.165 1 0.25 ? C5B BZA 12 A 1 HETATM 18 C C9B BZA . . . C 3 -1.717 1.747 2.633 1 0.25 ? C9B BZA 12 A 1 HETATM 19 C C11 BZA . . . C 3 -2.817 0.814 0.667 1 0.24 ? C11 BZA 12 A 1 HETATM 20 C C9A BZA . . . C 3 -1.786 2.459 3.844 1 0.27 ? C9A BZA 12 A 1 HETATM 21 C C10 BZA . . . C 3 -2.888 1.514 1.885 1 0.25 ? C10 BZA 12 A 1 HETATM 22 H H4C2 BZA . . . C 3 0.307 -1.492 -0.765 1 0.34 ? H4C2 BZA 12 A 1 HETATM 23 H H9C BZA . . . C 3 0.697 -1.719 -3.346 1 0.44 ? H9C BZA 12 A 1 HETATM 24 H H3 BZA . . . C 3 0.124 -3.386 -1.881 1 1.06 ? H3 BZA 12 A 1 HETATM 25 H H8B BZA . . . C 3 -1.313 -1.76 -4.676 1 0.43 ? H8B BZA 12 A 1 HETATM 26 H HO2 BZA . . . C 3 -1.062 0.697 -3.27 1 0.43 ? HO2 BZA 12 A 1 HETATM 27 H H3B BZA . . . C 3 -2.911 -2.36 -2.947 1 0.35 ? H3B BZA 12 A 1 HETATM 28 H H1 BZA . . . C 3 -3.36 0.083 -4.307 1 0.74 ? H1 BZA 12 A 1 HETATM 29 H H2A BZA . . . C 3 -4.859 -0.221 -1.851 1 0.26 ? H2A BZA 12 A 1 HETATM 30 H H1A BZA . . . C 3 -4.937 0.974 0.305 1 0.26 ? H1A BZA 12 A 1 HETATM 31 H H5A BZA . . . C 3 0.557 0.211 0.621 1 0.29 ? H5A BZA 12 A 1 HETATM 32 H H6A BZA . . . C 3 1.649 1.156 2.534 1 0.29 ? H6A BZA 12 A 1 HETATM 33 H H7A BZA . . . C 3 1.55 2.385 4.674 1 0.28 ? H7A BZA 12 A 1 HETATM 34 H H8A BZA . . . C 3 -0.665 3.244 5.515 1 0.3 ? H8A BZA 12 A 1 HETATM 35 H H9A BZA . . . C 3 -2.736 2.831 4.193 1 0.29 ? H9A BZA 12 A 1 HETATM 36 H H10 BZA . . . C 3 -3.842 1.862 2.248 1 0.27 ? H10 BZA 12 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #