data_1DL7
#
_model_server_result.job_id            '_R845mW-8kw5zk66Cb84fg' 
_model_server_result.datetime_utc      '2025-03-03 20:24:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    1DL7 
#
_exptl.entry_id    1DL7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              305.244 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            P-NITROPHENYL-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DL7 
_cell.length_a            130.9 
_cell.length_b            35.9 
_cell.length_c            50.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C11 H18 N2 O6 P 1' 
_chem_comp.formula_weight    305.244 
_chem_comp.id                NCH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              P-NITROPHENYL-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 P1 NCH doub 237 n n 
P1 O1 NCH sing 238 n n 
P1 O3 NCH sing 239 n n 
P1 O2 NCH sing 240 n n 
O1 HO1 NCH sing 241 n n 
O3 C4A NCH sing 242 n n 
O2 C1 NCH sing 243 n n 
C1 C2 NCH sing 244 n n 
C1 H11 NCH sing 245 n n 
C1 H12 NCH sing 246 n n 
C2 N1 NCH sing 247 n n 
C2 H21 NCH sing 248 n n 
C2 H22 NCH sing 249 n n 
N1 C3 NCH sing 250 n n 
N1 C5 NCH sing 251 n n 
N1 C4 NCH sing 252 n n 
C3 H31 NCH sing 253 n n 
C3 H32 NCH sing 254 n n 
C3 H33 NCH sing 255 n n 
C5 H51 NCH sing 256 n n 
C5 H52 NCH sing 257 n n 
C5 H53 NCH sing 258 n n 
C4 H41 NCH sing 259 n n 
C4 H42 NCH sing 260 n n 
C4 H43 NCH sing 261 n n 
C1A N1A NCH sing 262 n n 
C1A C2A NCH doub 263 n y 
C1A C6A NCH sing 264 n y 
N1A O1N NCH sing 265 n n 
N1A O2N NCH doub 266 n n 
C2A C3A NCH sing 267 n y 
C2A H2A NCH sing 268 n n 
C3A C4A NCH doub 269 n y 
C3A H3A NCH sing 270 n n 
C4A C5A NCH sing 271 n y 
C5A C6A NCH doub 272 n y 
C5A H5A NCH sing 273 n n 
C6A H6A NCH sing 274 n n 
#
_atom_sites.entry_id                     1DL7 
_atom_sites.fract_transf_matrix[1][1]    0.007639 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NCH L 1 999 999 NCH NCH . 
D 4 HOH L 1 1000 100 HOH HOH . 
D 4 HOH L 2 1001 101 HOH HOH . 
D 4 HOH L 3 1002 102 HOH HOH . 
D 4 HOH L 4 1003 103 HOH HOH . 
D 4 HOH L 5 1004 105 HOH HOH . 
D 4 HOH L 6 1005 108 HOH HOH . 
D 4 HOH L 7 1006 109 HOH HOH . 
D 4 HOH L 8 1007 110 HOH HOH . 
D 4 HOH L 9 1008 111 HOH HOH . 
D 4 HOH L 10 1009 112 HOH HOH . 
D 4 HOH L 11 1010 113 HOH HOH . 
D 4 HOH L 12 1011 114 HOH HOH . 
D 4 HOH L 13 1012 115 HOH HOH . 
D 4 HOH L 14 1013 116 HOH HOH . 
D 4 HOH L 15 1014 117 HOH HOH . 
D 4 HOH L 16 1015 118 HOH HOH . 
D 4 HOH L 17 1016 119 HOH HOH . 
D 4 HOH L 18 1017 120 HOH HOH . 
D 4 HOH L 19 1018 123 HOH HOH . 
D 4 HOH L 20 1019 124 HOH HOH . 
D 4 HOH L 21 1020 125 HOH HOH . 
D 4 HOH L 22 1021 126 HOH HOH . 
D 4 HOH L 23 1022 129 HOH HOH . 
D 4 HOH L 24 1023 130 HOH HOH . 
D 4 HOH L 25 1024 131 HOH HOH . 
D 4 HOH L 26 1025 134 HOH HOH . 
D 4 HOH L 27 1026 140 HOH HOH . 
D 4 HOH L 28 1027 141 HOH HOH . 
D 4 HOH L 29 1028 142 HOH HOH . 
D 4 HOH L 30 1029 143 HOH HOH . 
D 4 HOH L 31 1030 144 HOH HOH . 
D 4 HOH L 32 1031 146 HOH HOH . 
D 4 HOH L 33 1032 147 HOH HOH . 
D 4 HOH L 34 1033 148 HOH HOH . 
D 4 HOH L 35 1034 151 HOH HOH . 
D 4 HOH L 36 1035 152 HOH HOH . 
D 4 HOH L 37 1036 153 HOH HOH . 
D 4 HOH L 38 1037 154 HOH HOH . 
D 4 HOH L 39 1038 156 HOH HOH . 
D 4 HOH L 40 1039 157 HOH HOH . 
D 4 HOH L 41 1040 158 HOH HOH . 
D 4 HOH L 42 1041 160 HOH HOH . 
D 4 HOH L 43 1042 161 HOH HOH . 
D 4 HOH L 44 1043 162 HOH HOH . 
D 4 HOH L 45 1044 163 HOH HOH . 
D 4 HOH L 46 1045 164 HOH HOH . 
D 4 HOH L 47 1046 165 HOH HOH . 
D 4 HOH L 48 1047 166 HOH HOH . 
D 4 HOH L 49 1048 170 HOH HOH . 
D 4 HOH L 50 1049 174 HOH HOH . 
D 4 HOH L 51 1050 175 HOH HOH . 
D 4 HOH L 52 1051 176 HOH HOH . 
E 4 HOH H 1 113 104 HOH HOH . 
E 4 HOH H 2 114 106 HOH HOH . 
E 4 HOH H 3 115 107 HOH HOH . 
E 4 HOH H 4 116 121 HOH HOH . 
E 4 HOH H 5 117 122 HOH HOH . 
E 4 HOH H 6 118 127 HOH HOH . 
E 4 HOH H 7 119 128 HOH HOH . 
E 4 HOH H 8 120 132 HOH HOH . 
E 4 HOH H 9 121 133 HOH HOH . 
E 4 HOH H 10 122 135 HOH HOH . 
E 4 HOH H 11 123 136 HOH HOH . 
E 4 HOH H 12 124 137 HOH HOH . 
E 4 HOH H 13 125 138 HOH HOH . 
E 4 HOH H 14 126 139 HOH HOH . 
E 4 HOH H 15 127 145 HOH HOH . 
E 4 HOH H 16 128 149 HOH HOH . 
E 4 HOH H 17 129 150 HOH HOH . 
E 4 HOH H 18 130 155 HOH HOH . 
E 4 HOH H 19 131 159 HOH HOH . 
E 4 HOH H 20 132 167 HOH HOH . 
E 4 HOH H 21 133 168 HOH HOH . 
E 4 HOH H 22 134 169 HOH HOH . 
E 4 HOH H 23 135 171 HOH HOH . 
E 4 HOH H 24 136 172 HOH HOH . 
E 4 HOH H 25 137 173 HOH HOH . 
E 4 HOH H 26 138 177 HOH HOH . 
E 4 HOH H 27 139 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 NCH . . . C 3 106.049 23.874 17.73 1 49.98 ? O4 NCH 999 L 1 
HETATM 2 P P1 NCH . . . C 3 106.549 23.78 19.109 1 48.72 ? P1 NCH 999 L 1 
HETATM 3 O O1 NCH . . . C 3 107.432 22.601 19.243 1 46.99 ? O1 NCH 999 L 1 
HETATM 4 O O3 NCH . . . C 3 107.335 25.089 19.476 1 50.6 ? O3 NCH 999 L 1 
HETATM 5 O O2 NCH . . . C 3 105.329 23.556 20.133 1 48.91 ? O2 NCH 999 L 1 
HETATM 6 C C1 NCH . . . C 3 104.402 22.582 19.67 1 47.45 ? C1 NCH 999 L 1 
HETATM 7 C C2 NCH . . . C 3 103.845 21.786 20.817 1 45.56 ? C2 NCH 999 L 1 
HETATM 8 N N1 NCH . . . C 3 102.508 21.27 20.374 1 44.77 ? N1 NCH 999 L 1 
HETATM 9 C C3 NCH . . . C 3 102.678 20.214 19.301 1 45.14 ? C3 NCH 999 L 1 
HETATM 10 C C5 NCH . . . C 3 101.649 22.426 19.9 1 43.76 ? C5 NCH 999 L 1 
HETATM 11 C C4 NCH . . . C 3 101.812 20.433 21.437 1 43.74 ? C4 NCH 999 L 1 
HETATM 12 C C1A NCH . . . C 3 107.388 28.242 16.432 1 55.81 ? C1A NCH 999 L 1 
HETATM 13 N N1A NCH . . . C 3 107.388 29.284 15.439 1 57.13 ? N1A NCH 999 L 1 
HETATM 14 O O1N NCH . . . C 3 108.602 29.88 15.07 1 57.04 ? O1N NCH 999 L 1 
HETATM 15 O O2N NCH . . . C 3 106.133 29.627 14.918 1 58.27 ? O2N NCH 999 L 1 
HETATM 16 C C2A NCH . . . C 3 108.552 27.828 17.017 1 54.89 ? C2A NCH 999 L 1 
HETATM 17 C C3A NCH . . . C 3 108.522 26.83 17.965 1 54.07 ? C3A NCH 999 L 1 
HETATM 18 C C4A NCH . . . C 3 107.338 26.226 18.345 1 53.02 ? C4A NCH 999 L 1 
HETATM 19 C C5A NCH . . . C 3 106.18 26.665 17.751 1 54.57 ? C5A NCH 999 L 1 
HETATM 20 C C6A NCH . . . C 3 106.212 27.668 16.795 1 55.7 ? C6A NCH 999 L 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#