data_1DLQ # _model_server_result.job_id OfOe0IMH78tDdIARtwzqaQ _model_server_result.datetime_utc '2024-12-26 22:42:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1DLQ # _exptl.entry_id 1DLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.5 _cell.angle_gamma 90 _cell.entry_id 1DLQ _cell.length_a 52.7 _cell.length_b 87.6 _cell.length_c 84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 82 1_555 F HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A SD MET 86 A MET 86 1_555 F HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc3 A OH TYR 164 A TYR 164 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc4 A OH TYR 200 A TYR 200 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 A N CYS 202 A CYS 202 1_555 D HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc6 A SG CYS 202 A CYS 202 1_555 D HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 A N CYS 202 A CYS 202 1_555 E HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 A O CYS 202 A CYS 202 1_555 E HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc9 A OE1 GLN 209 A GLN 209 1_555 E HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 A O GLY 219 A GLY 219 1_555 D HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 A NE2 HIS 224 A HIS 224 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc12 A NE2 HIS 226 A HIS 226 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 C FE FE . A FE 400 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc14 D HG HG . A HG 401 1_555 M O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc15 B NE2 HIS 82 B HIS 82 1_555 K HG HG . B HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc16 B SD MET 86 B MET 86 1_555 K HG HG . B HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc17 B OH TYR 164 B TYR 164 1_555 H FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc18 B OH TYR 200 B TYR 200 1_555 H FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc19 B SG CYS 202 B CYS 202 1_555 I HG HG . B HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc20 B N CYS 202 B CYS 202 1_555 I HG HG . B HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc21 B O CYS 202 B CYS 202 1_555 J HG HG . B HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc22 B N CYS 202 B CYS 202 1_555 J HG HG . B HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc23 B NE2 GLN 209 B GLN 209 1_555 J HG HG . B HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc24 B O GLY 219 B GLY 219 1_555 I HG HG . B HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc25 B NE2 HIS 224 B HIS 224 1_555 H FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc26 B NE2 HIS 226 B HIS 226 1_555 H FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc27 H FE FE . B FE 400 1_555 N O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc28 I HG HG . B HG 401 1_555 N O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DLQ _atom_sites.fract_transf_matrix[1][1] 0.018975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002162 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 400 400 FE FE . D 3 HG A 1 401 401 HG HG . E 3 HG A 1 402 402 HG HG . F 3 HG A 1 403 403 HG HG . G 4 LIO A 1 1999 999 LIO LIP . H 2 FE B 1 400 400 FE FE . I 3 HG B 1 401 401 HG HG . J 3 HG B 1 402 402 HG HG . K 3 HG B 1 403 403 HG HG . L 4 LIO B 1 999 999 LIO LIP . M 5 HOH A 1 501 501 HOH HOH . M 5 HOH A 2 502 502 HOH HOH . M 5 HOH A 3 505 502 HOH HOH . M 5 HOH A 4 506 503 HOH HOH . M 5 HOH A 5 510 507 HOH HOH . M 5 HOH A 6 515 512 HOH HOH . M 5 HOH A 7 516 513 HOH HOH . M 5 HOH A 8 517 514 HOH HOH . M 5 HOH A 9 519 516 HOH HOH . M 5 HOH A 10 522 519 HOH HOH . M 5 HOH A 11 523 520 HOH HOH . M 5 HOH A 12 524 521 HOH HOH . M 5 HOH A 13 525 522 HOH HOH . M 5 HOH A 14 526 523 HOH HOH . M 5 HOH A 15 527 524 HOH HOH . M 5 HOH A 16 531 528 HOH HOH . M 5 HOH A 17 535 532 HOH HOH . M 5 HOH A 18 536 533 HOH HOH . M 5 HOH A 19 538 535 HOH HOH . M 5 HOH A 20 540 537 HOH HOH . M 5 HOH A 21 544 541 HOH HOH . M 5 HOH A 22 545 542 HOH HOH . M 5 HOH A 23 547 544 HOH HOH . M 5 HOH A 24 549 546 HOH HOH . M 5 HOH A 25 550 547 HOH HOH . M 5 HOH A 26 554 551 HOH HOH . M 5 HOH A 27 555 552 HOH HOH . M 5 HOH A 28 556 553 HOH HOH . M 5 HOH A 29 561 558 HOH HOH . M 5 HOH A 30 566 563 HOH HOH . M 5 HOH A 31 569 566 HOH HOH . M 5 HOH A 32 574 571 HOH HOH . M 5 HOH A 33 575 572 HOH HOH . M 5 HOH A 34 577 574 HOH HOH . M 5 HOH A 35 580 577 HOH HOH . M 5 HOH A 36 583 580 HOH HOH . M 5 HOH A 37 584 581 HOH HOH . M 5 HOH A 38 585 583 HOH HOH . M 5 HOH A 39 587 585 HOH HOH . M 5 HOH A 40 588 587 HOH HOH . M 5 HOH A 41 590 589 HOH HOH . M 5 HOH A 42 591 590 HOH HOH . M 5 HOH A 43 592 591 HOH HOH . M 5 HOH A 44 593 592 HOH HOH . M 5 HOH A 45 594 593 HOH HOH . M 5 HOH A 46 596 595 HOH HOH . M 5 HOH A 47 598 597 HOH HOH . M 5 HOH A 48 603 602 HOH HOH . M 5 HOH A 49 606 605 HOH HOH . M 5 HOH A 50 608 607 HOH HOH . M 5 HOH A 51 609 608 HOH HOH . M 5 HOH A 52 613 612 HOH HOH . M 5 HOH A 53 614 613 HOH HOH . M 5 HOH A 54 615 614 HOH HOH . M 5 HOH A 55 619 618 HOH HOH . M 5 HOH A 56 620 619 HOH HOH . M 5 HOH A 57 622 621 HOH HOH . M 5 HOH A 58 623 622 HOH HOH . N 5 HOH B 1 503 501 HOH HOH . N 5 HOH B 2 504 502 HOH HOH . N 5 HOH B 3 507 504 HOH HOH . N 5 HOH B 4 508 505 HOH HOH . N 5 HOH B 5 509 506 HOH HOH . N 5 HOH B 6 511 508 HOH HOH . N 5 HOH B 7 512 509 HOH HOH . N 5 HOH B 8 513 510 HOH HOH . N 5 HOH B 9 514 511 HOH HOH . N 5 HOH B 10 518 515 HOH HOH . N 5 HOH B 11 520 517 HOH HOH . N 5 HOH B 12 521 518 HOH HOH . N 5 HOH B 13 528 525 HOH HOH . N 5 HOH B 14 529 526 HOH HOH . N 5 HOH B 15 530 527 HOH HOH . N 5 HOH B 16 532 529 HOH HOH . N 5 HOH B 17 533 530 HOH HOH . N 5 HOH B 18 534 531 HOH HOH . N 5 HOH B 19 537 534 HOH HOH . N 5 HOH B 20 539 536 HOH HOH . N 5 HOH B 21 541 538 HOH HOH . N 5 HOH B 22 542 539 HOH HOH . N 5 HOH B 23 543 540 HOH HOH . N 5 HOH B 24 546 543 HOH HOH . N 5 HOH B 25 548 545 HOH HOH . N 5 HOH B 26 551 548 HOH HOH . N 5 HOH B 27 552 549 HOH HOH . N 5 HOH B 28 553 550 HOH HOH . N 5 HOH B 29 557 554 HOH HOH . N 5 HOH B 30 558 555 HOH HOH . N 5 HOH B 31 559 556 HOH HOH . N 5 HOH B 32 560 557 HOH HOH . N 5 HOH B 33 562 559 HOH HOH . N 5 HOH B 34 563 560 HOH HOH . N 5 HOH B 35 564 561 HOH HOH . N 5 HOH B 36 565 562 HOH HOH . N 5 HOH B 37 567 564 HOH HOH . N 5 HOH B 38 568 565 HOH HOH . N 5 HOH B 39 570 567 HOH HOH . N 5 HOH B 40 571 568 HOH HOH . N 5 HOH B 41 572 569 HOH HOH . N 5 HOH B 42 573 570 HOH HOH . N 5 HOH B 43 576 573 HOH HOH . N 5 HOH B 44 578 575 HOH HOH . N 5 HOH B 45 579 576 HOH HOH . N 5 HOH B 46 581 578 HOH HOH . N 5 HOH B 47 582 579 HOH HOH . N 5 HOH B 48 586 584 HOH HOH . N 5 HOH B 49 589 588 HOH HOH . N 5 HOH B 50 595 594 HOH HOH . N 5 HOH B 51 597 596 HOH HOH . N 5 HOH B 52 599 598 HOH HOH . N 5 HOH B 53 600 599 HOH HOH . N 5 HOH B 54 601 600 HOH HOH . N 5 HOH B 55 602 601 HOH HOH . N 5 HOH B 56 604 603 HOH HOH . N 5 HOH B 57 605 604 HOH HOH . N 5 HOH B 58 607 606 HOH HOH . N 5 HOH B 59 610 609 HOH HOH . N 5 HOH B 60 611 610 HOH HOH . N 5 HOH B 61 612 611 HOH HOH . N 5 HOH B 62 616 615 HOH HOH . N 5 HOH B 63 617 616 HOH HOH . N 5 HOH B 64 618 617 HOH HOH . N 5 HOH B 65 621 620 HOH HOH . N 5 HOH B 66 624 623 HOH HOH . N 5 HOH B 67 625 624 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.725 _atom_site.Cartn_y 87.809 _atom_site.Cartn_z 78.887 _atom_site.occupancy 0.65 _atom_site.B_iso_or_equiv 27.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #