data_1DLR # _model_server_result.job_id 3BumVtO7-ETjGjwQxEpxJg _model_server_result.datetime_utc '2024-11-22 22:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 1DLR # _exptl.entry_id 1DLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DLR _cell.length_a 87.002 _cell.length_b 87.002 _cell.length_c 76.728 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 282 n n PA O2A NDP sing 283 n n PA O5B NDP sing 284 n n PA O3 NDP sing 285 n n O2A HOA2 NDP sing 286 n n O5B C5B NDP sing 287 n n C5B C4B NDP sing 288 n n C5B H51A NDP sing 289 n n C5B H52A NDP sing 290 n n C4B O4B NDP sing 291 n n C4B C3B NDP sing 292 n n C4B H4B NDP sing 293 n n O4B C1B NDP sing 294 n n C3B O3B NDP sing 295 n n C3B C2B NDP sing 296 n n C3B H3B NDP sing 297 n n O3B HO3A NDP sing 298 n n C2B O2B NDP sing 299 n n C2B C1B NDP sing 300 n n C2B H2B NDP sing 301 n n O2B P2B NDP sing 302 n n C1B N9A NDP sing 303 n n C1B H1B NDP sing 304 n n N9A C8A NDP sing 305 n y N9A C4A NDP sing 306 n y C8A N7A NDP doub 307 n y C8A H8A NDP sing 308 n n N7A C5A NDP sing 309 n y C5A C6A NDP sing 310 n y C5A C4A NDP doub 311 n y C6A N6A NDP sing 312 n n C6A N1A NDP doub 313 n y N6A H61A NDP sing 314 n n N6A H62A NDP sing 315 n n N1A C2A NDP sing 316 n y C2A N3A NDP doub 317 n y C2A H2A NDP sing 318 n n N3A C4A NDP sing 319 n y O3 PN NDP sing 320 n n PN O1N NDP doub 321 n n PN O2N NDP sing 322 n n PN O5D NDP sing 323 n n O2N H21N NDP sing 324 n n O5D C5D NDP sing 325 n n C5D C4D NDP sing 326 n n C5D H51N NDP sing 327 n n C5D H52N NDP sing 328 n n C4D O4D NDP sing 329 n n C4D C3D NDP sing 330 n n C4D H4D NDP sing 331 n n O4D C1D NDP sing 332 n n C3D O3D NDP sing 333 n n C3D C2D NDP sing 334 n n C3D H3D NDP sing 335 n n O3D HO3N NDP sing 336 n n C2D O2D NDP sing 337 n n C2D C1D NDP sing 338 n n C2D H2D NDP sing 339 n n O2D HO2N NDP sing 340 n n C1D N1N NDP sing 341 n n C1D H1D NDP sing 342 n n N1N C2N NDP sing 343 n n N1N C6N NDP sing 344 n n C2N C3N NDP doub 345 n n C2N H2N NDP sing 346 n n C3N C7N NDP sing 347 n n C3N C4N NDP sing 348 n n C7N O7N NDP doub 349 n n C7N N7N NDP sing 350 n n N7N H71N NDP sing 351 n n N7N H72N NDP sing 352 n n C4N C5N NDP sing 353 n n C4N H41N NDP sing 354 n n C4N H42N NDP sing 355 n n C5N C6N NDP doub 356 n n C5N H5N NDP sing 357 n n C6N H6N NDP sing 358 n n P2B O1X NDP doub 359 n n P2B O2X NDP sing 360 n n P2B O3X NDP sing 361 n n O2X HOP2 NDP sing 362 n n O3X HOP3 NDP sing 363 n n # _atom_sites.entry_id 1DLR _atom_sites.fract_transf_matrix[1][1] 0.011494 _atom_sites.fract_transf_matrix[1][2] 0.006636 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 187 NDP NDP . C 3 MXA A 1 188 187 MXA MXA . D 4 HOH A 1 189 188 HOH HOH . D 4 HOH A 2 190 189 HOH HOH . D 4 HOH A 3 191 190 HOH HOH . D 4 HOH A 4 192 191 HOH HOH . D 4 HOH A 5 193 192 HOH HOH . D 4 HOH A 6 194 193 HOH HOH . D 4 HOH A 7 195 194 HOH HOH . D 4 HOH A 8 196 195 HOH HOH . D 4 HOH A 9 197 196 HOH HOH . D 4 HOH A 10 198 197 HOH HOH . D 4 HOH A 11 199 198 HOH HOH . D 4 HOH A 12 200 199 HOH HOH . D 4 HOH A 13 201 200 HOH HOH . D 4 HOH A 14 202 201 HOH HOH . D 4 HOH A 15 203 202 HOH HOH . D 4 HOH A 16 204 203 HOH HOH . D 4 HOH A 17 205 204 HOH HOH . D 4 HOH A 18 206 205 HOH HOH . D 4 HOH A 19 207 206 HOH HOH . D 4 HOH A 20 208 207 HOH HOH . D 4 HOH A 21 209 208 HOH HOH . D 4 HOH A 22 210 209 HOH HOH . D 4 HOH A 23 211 210 HOH HOH . D 4 HOH A 24 212 211 HOH HOH . D 4 HOH A 25 213 212 HOH HOH . D 4 HOH A 26 214 213 HOH HOH . D 4 HOH A 27 215 214 HOH HOH . D 4 HOH A 28 216 215 HOH HOH . D 4 HOH A 29 217 216 HOH HOH . D 4 HOH A 30 218 217 HOH HOH . D 4 HOH A 31 219 218 HOH HOH . D 4 HOH A 32 220 219 HOH HOH . D 4 HOH A 33 221 220 HOH HOH . D 4 HOH A 34 222 221 HOH HOH . D 4 HOH A 35 223 222 HOH HOH . D 4 HOH A 36 224 223 HOH HOH . D 4 HOH A 37 225 224 HOH HOH . D 4 HOH A 38 226 225 HOH HOH . D 4 HOH A 39 227 226 HOH HOH . D 4 HOH A 40 228 227 HOH HOH . D 4 HOH A 41 229 228 HOH HOH . D 4 HOH A 42 230 229 HOH HOH . D 4 HOH A 43 231 230 HOH HOH . D 4 HOH A 44 232 231 HOH HOH . D 4 HOH A 45 233 232 HOH HOH . D 4 HOH A 46 234 233 HOH HOH . D 4 HOH A 47 235 234 HOH HOH . D 4 HOH A 48 236 235 HOH HOH . D 4 HOH A 49 237 236 HOH HOH . D 4 HOH A 50 238 237 HOH HOH . D 4 HOH A 51 239 238 HOH HOH . D 4 HOH A 52 240 239 HOH HOH . D 4 HOH A 53 241 240 HOH HOH . D 4 HOH A 54 242 241 HOH HOH . D 4 HOH A 55 243 242 HOH HOH . D 4 HOH A 56 244 243 HOH HOH . D 4 HOH A 57 245 244 HOH HOH . D 4 HOH A 58 246 245 HOH HOH . D 4 HOH A 59 247 246 HOH HOH . D 4 HOH A 60 248 247 HOH HOH . D 4 HOH A 61 249 248 HOH HOH . D 4 HOH A 62 250 249 HOH HOH . D 4 HOH A 63 251 250 HOH HOH . D 4 HOH A 64 252 251 HOH HOH . D 4 HOH A 65 253 252 HOH HOH . D 4 HOH A 66 254 253 HOH HOH . D 4 HOH A 67 255 254 HOH HOH . D 4 HOH A 68 256 255 HOH HOH . D 4 HOH A 69 257 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 26.525 8.456 8.615 1 25.7 ? PA NDP 187 A 1 HETATM 2 O O1A NDP . . . B 2 27.028 9.771 8.143 1 26.44 ? O1A NDP 187 A 1 HETATM 3 O O2A NDP . . . B 2 25.171 8.032 8.277 1 27.41 ? O2A NDP 187 A 1 HETATM 4 O O5B NDP . . . B 2 26.737 8.581 10.274 1 27.78 ? O5B NDP 187 A 1 HETATM 5 C C5B NDP . . . B 2 26.02 7.656 11.14 1 30.56 ? C5B NDP 187 A 1 HETATM 6 C C4B NDP . . . B 2 25.753 8.516 12.415 1 33.26 ? C4B NDP 187 A 1 HETATM 7 O O4B NDP . . . B 2 24.881 9.348 12.169 1 34.96 ? O4B NDP 187 A 1 HETATM 8 C C3B NDP . . . B 2 25.013 7.429 13.388 1 34.89 ? C3B NDP 187 A 1 HETATM 9 O O3B NDP . . . B 2 26.259 6.947 14.093 1 36.05 ? O3B NDP 187 A 1 HETATM 10 C C2B NDP . . . B 2 24.113 8.399 14.155 1 35.41 ? C2B NDP 187 A 1 HETATM 11 O O2B NDP . . . B 2 24.757 9.209 15.036 1 34.41 ? O2B NDP 187 A 1 HETATM 12 C C1B NDP . . . B 2 23.709 9.36 12.995 1 36.34 ? C1B NDP 187 A 1 HETATM 13 N N9A NDP . . . B 2 22.569 8.837 12.299 1 39.02 ? N9A NDP 187 A 1 HETATM 14 C C8A NDP . . . B 2 22.668 8.168 11.141 1 39.53 ? C8A NDP 187 A 1 HETATM 15 N N7A NDP . . . B 2 21.497 7.789 10.692 1 40.61 ? N7A NDP 187 A 1 HETATM 16 C C5A NDP . . . B 2 20.616 8.302 11.707 1 41.58 ? C5A NDP 187 A 1 HETATM 17 C C6A NDP . . . B 2 19.071 8.275 11.919 1 43.33 ? C6A NDP 187 A 1 HETATM 18 N N6A NDP . . . B 2 18.299 7.658 10.994 1 46.22 ? N6A NDP 187 A 1 HETATM 19 N N1A NDP . . . B 2 18.589 8.854 13.022 1 42.75 ? N1A NDP 187 A 1 HETATM 20 C C2A NDP . . . B 2 19.483 9.448 13.818 1 41.01 ? C2A NDP 187 A 1 HETATM 21 N N3A NDP . . . B 2 20.798 9.549 13.767 1 42.12 ? N3A NDP 187 A 1 HETATM 22 C C4A NDP . . . B 2 21.306 8.913 12.646 1 41.28 ? C4A NDP 187 A 1 HETATM 23 O O3 NDP . . . B 2 27.744 7.523 8.36 1 29.15 ? O3 NDP 187 A 1 HETATM 24 P PN NDP . . . B 2 28.229 6.3 7.459 1 30.88 ? PN NDP 187 A 1 HETATM 25 O O1N NDP . . . B 2 27.171 5.512 6.882 1 32.32 ? O1N NDP 187 A 1 HETATM 26 O O2N NDP . . . B 2 29.12 5.476 8.232 1 31.55 ? O2N NDP 187 A 1 HETATM 27 O O5D NDP . . . B 2 29.089 6.974 6.292 1 30.19 ? O5D NDP 187 A 1 HETATM 28 C C5D NDP . . . B 2 29.98 8.088 6.318 1 30.9 ? C5D NDP 187 A 1 HETATM 29 C C4D NDP . . . B 2 30.947 7.486 5.284 1 32.34 ? C4D NDP 187 A 1 HETATM 30 O O4D NDP . . . B 2 30.339 7.507 3.932 1 34.3 ? O4D NDP 187 A 1 HETATM 31 C C3D NDP . . . B 2 32.305 8.244 5.053 1 33.52 ? C3D NDP 187 A 1 HETATM 32 O O3D NDP . . . B 2 33.043 7.194 4.406 1 33.83 ? O3D NDP 187 A 1 HETATM 33 C C2D NDP . . . B 2 31.857 9.396 4.1 1 33.93 ? C2D NDP 187 A 1 HETATM 34 O O2D NDP . . . B 2 33.005 9.945 3.485 1 35.93 ? O2D NDP 187 A 1 HETATM 35 C C1D NDP . . . B 2 30.991 8.581 3.137 1 33.38 ? C1D NDP 187 A 1 HETATM 36 N N1N NDP . . . B 2 29.925 9.287 2.27 1 32.17 ? N1N NDP 187 A 1 HETATM 37 C C2N NDP . . . B 2 30.052 9.08 0.849 1 30.39 ? C2N NDP 187 A 1 HETATM 38 C C3N NDP . . . B 2 29.134 9.629 0.048 1 28.17 ? C3N NDP 187 A 1 HETATM 39 C C7N NDP . . . B 2 29.307 9.338 -1.404 1 26.06 ? C7N NDP 187 A 1 HETATM 40 O O7N NDP . . . B 2 28.42 9.907 -1.957 1 25.68 ? O7N NDP 187 A 1 HETATM 41 N N7N NDP . . . B 2 30.238 8.6 -1.977 1 25.55 ? N7N NDP 187 A 1 HETATM 42 C C4N NDP . . . B 2 27.917 10.491 0.501 1 28.36 ? C4N NDP 187 A 1 HETATM 43 C C5N NDP . . . B 2 27.982 10.64 2.011 1 29 ? C5N NDP 187 A 1 HETATM 44 C C6N NDP . . . B 2 28.886 10.059 2.781 1 30.9 ? C6N NDP 187 A 1 HETATM 45 P P2B NDP . . . B 2 24.899 8.886 16.728 1 33.18 ? P2B NDP 187 A 1 HETATM 46 O O1X NDP . . . B 2 25.905 7.786 16.721 1 32.5 ? O1X NDP 187 A 1 HETATM 47 O O2X NDP . . . B 2 23.545 8.529 17.087 1 30.84 ? O2X NDP 187 A 1 HETATM 48 O O3X NDP . . . B 2 25.709 10.111 17.057 1 33.14 ? O3X NDP 187 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #