data_1DLR
#
_model_server_result.job_id            GKVd6t2NdVVySimQCuXeHQ 
_model_server_result.datetime_utc      '2024-11-22 22:58:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dlr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":188}' 
#
_entry.id    1DLR 
#
_exptl.entry_id    1DLR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              325.365 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2,5-DIMETHOXY-BENZYL)-5-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DLR 
_cell.length_a            87.002 
_cell.length_b            87.002 
_cell.length_c            76.728 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DLR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H19 N5 O2' 
_chem_comp.formula_weight    325.365 
_chem_comp.id                MXA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2,5-DIMETHOXY-BENZYL)-5-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MXA doub 237 n y 
N1 C8A MXA sing 238 n y 
C2 N2 MXA sing 239 n n 
C2 N3 MXA sing 240 n y 
N2 HN21 MXA sing 241 n n 
N2 HN22 MXA sing 242 n n 
N3 C4 MXA doub 243 n y 
C4 N4 MXA sing 244 n n 
C4 C4A MXA sing 245 n y 
N4 HN41 MXA sing 246 n n 
N4 HN42 MXA sing 247 n n 
C4A C5 MXA sing 248 n y 
C4A C8A MXA doub 249 n y 
C5 C5M MXA sing 250 n n 
C5 C6 MXA doub 251 n y 
C5M H5M1 MXA sing 252 n n 
C5M H5M2 MXA sing 253 n n 
C5M H5M3 MXA sing 254 n n 
C6 C7 MXA sing 255 n y 
C6 C9 MXA sing 256 n n 
C7 N8 MXA doub 257 n y 
C7 H7 MXA sing 258 n n 
N8 C8A MXA sing 259 n y 
C9 C1' MXA sing 260 n n 
C9 H91 MXA sing 261 n n 
C9 H92 MXA sing 262 n n 
C1' C2' MXA doub 263 n y 
C1' C6' MXA sing 264 n y 
C2' O2' MXA sing 265 n n 
C2' C3' MXA sing 266 n y 
O2' C21 MXA sing 267 n n 
C21 H211 MXA sing 268 n n 
C21 H212 MXA sing 269 n n 
C21 H213 MXA sing 270 n n 
C3' C4' MXA doub 271 n y 
C3' H3' MXA sing 272 n n 
C4' C5' MXA sing 273 n y 
C4' H4' MXA sing 274 n n 
C5' O5' MXA sing 275 n n 
C5' C6' MXA doub 276 n y 
O5' C51 MXA sing 277 n n 
C51 H511 MXA sing 278 n n 
C51 H512 MXA sing 279 n n 
C51 H513 MXA sing 280 n n 
C6' H6' MXA sing 281 n n 
#
_atom_sites.entry_id                     1DLR 
_atom_sites.fract_transf_matrix[1][1]    0.011494 
_atom_sites.fract_transf_matrix[1][2]    0.006636 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 187 187 NDP NDP . 
C 3 MXA A 1 188 187 MXA MXA . 
D 4 HOH A 1 189 188 HOH HOH . 
D 4 HOH A 2 190 189 HOH HOH . 
D 4 HOH A 3 191 190 HOH HOH . 
D 4 HOH A 4 192 191 HOH HOH . 
D 4 HOH A 5 193 192 HOH HOH . 
D 4 HOH A 6 194 193 HOH HOH . 
D 4 HOH A 7 195 194 HOH HOH . 
D 4 HOH A 8 196 195 HOH HOH . 
D 4 HOH A 9 197 196 HOH HOH . 
D 4 HOH A 10 198 197 HOH HOH . 
D 4 HOH A 11 199 198 HOH HOH . 
D 4 HOH A 12 200 199 HOH HOH . 
D 4 HOH A 13 201 200 HOH HOH . 
D 4 HOH A 14 202 201 HOH HOH . 
D 4 HOH A 15 203 202 HOH HOH . 
D 4 HOH A 16 204 203 HOH HOH . 
D 4 HOH A 17 205 204 HOH HOH . 
D 4 HOH A 18 206 205 HOH HOH . 
D 4 HOH A 19 207 206 HOH HOH . 
D 4 HOH A 20 208 207 HOH HOH . 
D 4 HOH A 21 209 208 HOH HOH . 
D 4 HOH A 22 210 209 HOH HOH . 
D 4 HOH A 23 211 210 HOH HOH . 
D 4 HOH A 24 212 211 HOH HOH . 
D 4 HOH A 25 213 212 HOH HOH . 
D 4 HOH A 26 214 213 HOH HOH . 
D 4 HOH A 27 215 214 HOH HOH . 
D 4 HOH A 28 216 215 HOH HOH . 
D 4 HOH A 29 217 216 HOH HOH . 
D 4 HOH A 30 218 217 HOH HOH . 
D 4 HOH A 31 219 218 HOH HOH . 
D 4 HOH A 32 220 219 HOH HOH . 
D 4 HOH A 33 221 220 HOH HOH . 
D 4 HOH A 34 222 221 HOH HOH . 
D 4 HOH A 35 223 222 HOH HOH . 
D 4 HOH A 36 224 223 HOH HOH . 
D 4 HOH A 37 225 224 HOH HOH . 
D 4 HOH A 38 226 225 HOH HOH . 
D 4 HOH A 39 227 226 HOH HOH . 
D 4 HOH A 40 228 227 HOH HOH . 
D 4 HOH A 41 229 228 HOH HOH . 
D 4 HOH A 42 230 229 HOH HOH . 
D 4 HOH A 43 231 230 HOH HOH . 
D 4 HOH A 44 232 231 HOH HOH . 
D 4 HOH A 45 233 232 HOH HOH . 
D 4 HOH A 46 234 233 HOH HOH . 
D 4 HOH A 47 235 234 HOH HOH . 
D 4 HOH A 48 236 235 HOH HOH . 
D 4 HOH A 49 237 236 HOH HOH . 
D 4 HOH A 50 238 237 HOH HOH . 
D 4 HOH A 51 239 238 HOH HOH . 
D 4 HOH A 52 240 239 HOH HOH . 
D 4 HOH A 53 241 240 HOH HOH . 
D 4 HOH A 54 242 241 HOH HOH . 
D 4 HOH A 55 243 242 HOH HOH . 
D 4 HOH A 56 244 243 HOH HOH . 
D 4 HOH A 57 245 244 HOH HOH . 
D 4 HOH A 58 246 245 HOH HOH . 
D 4 HOH A 59 247 246 HOH HOH . 
D 4 HOH A 60 248 247 HOH HOH . 
D 4 HOH A 61 249 248 HOH HOH . 
D 4 HOH A 62 250 249 HOH HOH . 
D 4 HOH A 63 251 250 HOH HOH . 
D 4 HOH A 64 252 251 HOH HOH . 
D 4 HOH A 65 253 252 HOH HOH . 
D 4 HOH A 66 254 253 HOH HOH . 
D 4 HOH A 67 255 254 HOH HOH . 
D 4 HOH A 68 256 255 HOH HOH . 
D 4 HOH A 69 257 256 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MXA . . . C 3 28.781 13.606 -4.455 1 25.87 ? N1 MXA 188 A 1 
HETATM 2 C C2 MXA . . . C 3 27.635 12.961 -4.519 1 23.48 ? C2 MXA 188 A 1 
HETATM 3 N N2 MXA . . . C 3 27.213 12.458 -5.693 1 23.32 ? N2 MXA 188 A 1 
HETATM 4 N N3 MXA . . . C 3 26.808 12.721 -3.512 1 23.71 ? N3 MXA 188 A 1 
HETATM 5 C C4 MXA . . . C 3 27.088 13.153 -2.308 1 24.6 ? C4 MXA 188 A 1 
HETATM 6 N N4 MXA . . . C 3 26.197 12.877 -1.317 1 24.47 ? N4 MXA 188 A 1 
HETATM 7 C C4A MXA . . . C 3 28.294 13.904 -2.067 1 25.41 ? C4A MXA 188 A 1 
HETATM 8 C C5 MXA . . . C 3 28.715 14.451 -0.852 1 26.53 ? C5 MXA 188 A 1 
HETATM 9 C C5M MXA . . . C 3 27.887 14.323 0.402 1 28.54 ? C5M MXA 188 A 1 
HETATM 10 C C6 MXA . . . C 3 29.904 15.13 -0.829 1 28.78 ? C6 MXA 188 A 1 
HETATM 11 C C7 MXA . . . C 3 30.634 15.28 -2.016 1 27.61 ? C7 MXA 188 A 1 
HETATM 12 N N8 MXA . . . C 3 30.248 14.806 -3.194 1 25.92 ? N8 MXA 188 A 1 
HETATM 13 C C8A MXA . . . C 3 29.108 14.092 -3.223 1 26.09 ? C8A MXA 188 A 1 
HETATM 14 C C9 MXA . . . C 3 30.371 15.8 0.458 1 31.49 ? C9 MXA 188 A 1 
HETATM 15 C C1' MXA . . . C 3 31.855 15.765 0.649 1 31.83 ? C1' MXA 188 A 1 
HETATM 16 C C2' MXA . . . C 3 32.449 14.702 1.307 1 33.85 ? C2' MXA 188 A 1 
HETATM 17 O O2' MXA . . . C 3 31.54 13.771 1.762 1 34.86 ? O2' MXA 188 A 1 
HETATM 18 C C21 MXA . . . C 3 31.909 12.417 1.937 1 37.86 ? C21 MXA 188 A 1 
HETATM 19 C C3' MXA . . . C 3 33.829 14.692 1.433 1 34.68 ? C3' MXA 188 A 1 
HETATM 20 C C4' MXA . . . C 3 34.599 15.738 0.927 1 35.63 ? C4' MXA 188 A 1 
HETATM 21 C C5' MXA . . . C 3 33.955 16.783 0.316 1 35.56 ? C5' MXA 188 A 1 
HETATM 22 O O5' MXA . . . C 3 34.533 17.941 -0.271 1 42.23 ? O5' MXA 188 A 1 
HETATM 23 C C51 MXA . . . C 3 35.945 17.683 -0.337 1 41.88 ? C51 MXA 188 A 1 
HETATM 24 C C6' MXA . . . C 3 32.591 16.81 0.173 1 34.28 ? C6' MXA 188 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           24 
#