data_1DLS # _model_server_result.job_id k1TTBN5nyO67Pal29LeoDQ _model_server_result.datetime_utc '2024-11-15 07:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":188}' # _entry.id 1DLS # _exptl.entry_id 1DLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DLS _cell.length_a 87.496 _cell.length_b 87.496 _cell.length_c 76.733 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 1DLS _atom_sites.fract_transf_matrix[1][1] 0.011429 _atom_sites.fract_transf_matrix[1][2] 0.006599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 187 NDP NDP . C 3 MTX A 1 188 187 MTX MTX . D 4 HOH A 1 189 188 HOH HOH . D 4 HOH A 2 190 189 HOH HOH . D 4 HOH A 3 191 190 HOH HOH . D 4 HOH A 4 192 191 HOH HOH . D 4 HOH A 5 193 192 HOH HOH . D 4 HOH A 6 194 193 HOH HOH . D 4 HOH A 7 195 194 HOH HOH . D 4 HOH A 8 196 195 HOH HOH . D 4 HOH A 9 197 196 HOH HOH . D 4 HOH A 10 198 197 HOH HOH . D 4 HOH A 11 199 198 HOH HOH . D 4 HOH A 12 200 199 HOH HOH . D 4 HOH A 13 201 200 HOH HOH . D 4 HOH A 14 202 201 HOH HOH . D 4 HOH A 15 203 202 HOH HOH . D 4 HOH A 16 204 203 HOH HOH . D 4 HOH A 17 205 204 HOH HOH . D 4 HOH A 18 206 205 HOH HOH . D 4 HOH A 19 207 206 HOH HOH . D 4 HOH A 20 208 207 HOH HOH . D 4 HOH A 21 209 208 HOH HOH . D 4 HOH A 22 210 209 HOH HOH . D 4 HOH A 23 211 210 HOH HOH . D 4 HOH A 24 212 211 HOH HOH . D 4 HOH A 25 213 212 HOH HOH . D 4 HOH A 26 214 213 HOH HOH . D 4 HOH A 27 215 214 HOH HOH . D 4 HOH A 28 216 215 HOH HOH . D 4 HOH A 29 217 216 HOH HOH . D 4 HOH A 30 218 217 HOH HOH . D 4 HOH A 31 219 218 HOH HOH . D 4 HOH A 32 220 219 HOH HOH . D 4 HOH A 33 221 220 HOH HOH . D 4 HOH A 34 222 221 HOH HOH . D 4 HOH A 35 223 222 HOH HOH . D 4 HOH A 36 224 223 HOH HOH . D 4 HOH A 37 225 224 HOH HOH . D 4 HOH A 38 226 225 HOH HOH . D 4 HOH A 39 227 226 HOH HOH . D 4 HOH A 40 228 227 HOH HOH . D 4 HOH A 41 229 228 HOH HOH . D 4 HOH A 42 230 229 HOH HOH . D 4 HOH A 43 231 230 HOH HOH . D 4 HOH A 44 232 231 HOH HOH . D 4 HOH A 45 233 232 HOH HOH . D 4 HOH A 46 234 233 HOH HOH . D 4 HOH A 47 235 234 HOH HOH . D 4 HOH A 48 236 235 HOH HOH . D 4 HOH A 49 237 236 HOH HOH . D 4 HOH A 50 238 237 HOH HOH . D 4 HOH A 51 239 238 HOH HOH . D 4 HOH A 52 240 239 HOH HOH . D 4 HOH A 53 241 240 HOH HOH . D 4 HOH A 54 242 241 HOH HOH . D 4 HOH A 55 243 242 HOH HOH . D 4 HOH A 56 244 243 HOH HOH . D 4 HOH A 57 245 244 HOH HOH . D 4 HOH A 58 246 245 HOH HOH . D 4 HOH A 59 247 246 HOH HOH . D 4 HOH A 60 248 247 HOH HOH . D 4 HOH A 61 249 248 HOH HOH . D 4 HOH A 62 250 249 HOH HOH . D 4 HOH A 63 251 250 HOH HOH . D 4 HOH A 64 252 251 HOH HOH . D 4 HOH A 65 253 252 HOH HOH . D 4 HOH A 66 254 253 HOH HOH . D 4 HOH A 67 255 254 HOH HOH . D 4 HOH A 68 256 255 HOH HOH . D 4 HOH A 69 257 256 HOH HOH . D 4 HOH A 70 258 257 HOH HOH . D 4 HOH A 71 259 258 HOH HOH . D 4 HOH A 72 260 259 HOH HOH . D 4 HOH A 73 261 260 HOH HOH . D 4 HOH A 74 262 261 HOH HOH . D 4 HOH A 75 263 262 HOH HOH . D 4 HOH A 76 264 263 HOH HOH . D 4 HOH A 77 265 264 HOH HOH . D 4 HOH A 78 266 265 HOH HOH . D 4 HOH A 79 267 266 HOH HOH . D 4 HOH A 80 268 267 HOH HOH . D 4 HOH A 81 269 268 HOH HOH . D 4 HOH A 82 270 269 HOH HOH . D 4 HOH A 83 271 270 HOH HOH . D 4 HOH A 84 272 271 HOH HOH . D 4 HOH A 85 273 272 HOH HOH . D 4 HOH A 86 274 273 HOH HOH . D 4 HOH A 87 275 274 HOH HOH . D 4 HOH A 88 276 275 HOH HOH . D 4 HOH A 89 277 276 HOH HOH . D 4 HOH A 90 278 277 HOH HOH . D 4 HOH A 91 279 278 HOH HOH . D 4 HOH A 92 280 279 HOH HOH . D 4 HOH A 93 281 280 HOH HOH . D 4 HOH A 94 282 281 HOH HOH . D 4 HOH A 95 283 282 HOH HOH . D 4 HOH A 96 284 283 HOH HOH . D 4 HOH A 97 285 284 HOH HOH . D 4 HOH A 98 286 285 HOH HOH . D 4 HOH A 99 287 286 HOH HOH . D 4 HOH A 100 288 287 HOH HOH . D 4 HOH A 101 289 288 HOH HOH . D 4 HOH A 102 290 289 HOH HOH . D 4 HOH A 103 291 290 HOH HOH . D 4 HOH A 104 292 291 HOH HOH . D 4 HOH A 105 293 292 HOH HOH . D 4 HOH A 106 294 293 HOH HOH . D 4 HOH A 107 295 294 HOH HOH . D 4 HOH A 108 296 295 HOH HOH . D 4 HOH A 109 297 296 HOH HOH . D 4 HOH A 110 298 297 HOH HOH . D 4 HOH A 111 299 298 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . C 3 28.791 13.162 -4.339 1 23.22 ? N1 MTX 188 A 1 HETATM 2 C C2 MTX . . . C 3 27.462 13.045 -4.573 1 21.35 ? C2 MTX 188 A 1 HETATM 3 N NA2 MTX . . . C 3 27.074 12.941 -5.803 1 19.74 ? NA2 MTX 188 A 1 HETATM 4 N N3 MTX . . . C 3 26.631 12.817 -3.57 1 18.8 ? N3 MTX 188 A 1 HETATM 5 C C4 MTX . . . C 3 27.033 12.918 -2.315 1 16.56 ? C4 MTX 188 A 1 HETATM 6 N NA4 MTX . . . C 3 26.102 12.794 -1.368 1 15.42 ? NA4 MTX 188 A 1 HETATM 7 C C4A MTX . . . C 3 28.39 13.18 -1.972 1 22.27 ? C4A MTX 188 A 1 HETATM 8 N N5 MTX . . . C 3 28.85 13.249 -0.717 1 25.21 ? N5 MTX 188 A 1 HETATM 9 C C6 MTX . . . C 3 30.15 13.31 -0.539 1 28.52 ? C6 MTX 188 A 1 HETATM 10 C C7 MTX . . . C 3 31.042 13.454 -1.618 1 26.58 ? C7 MTX 188 A 1 HETATM 11 N N8 MTX . . . C 3 30.583 13.323 -2.872 1 24.61 ? N8 MTX 188 A 1 HETATM 12 C C8A MTX . . . C 3 29.299 13.207 -3.057 1 26.82 ? C8A MTX 188 A 1 HETATM 13 C C9 MTX . . . C 3 30.6 13.422 0.915 1 26.19 ? C9 MTX 188 A 1 HETATM 14 N N10 MTX . . . C 3 31.821 14.118 1.219 1 29.29 ? N10 MTX 188 A 1 HETATM 15 C CM MTX . . . C 3 32.664 13.583 2.265 1 27.66 ? CM MTX 188 A 1 HETATM 16 C C11 MTX . . . C 3 32.147 18.171 0.263 1 30.01 ? C11 MTX 188 A 1 HETATM 17 C C12 MTX . . . C 3 33.305 17.449 0.656 1 29.53 ? C12 MTX 188 A 1 HETATM 18 C C13 MTX . . . C 3 33.137 16.123 1.038 1 27.91 ? C13 MTX 188 A 1 HETATM 19 C C14 MTX . . . C 3 31.897 15.475 0.971 1 28.65 ? C14 MTX 188 A 1 HETATM 20 C C15 MTX . . . C 3 30.782 16.183 0.5 1 29.85 ? C15 MTX 188 A 1 HETATM 21 C C16 MTX . . . C 3 30.903 17.54 0.176 1 27.81 ? C16 MTX 188 A 1 HETATM 22 C C MTX . . . C 3 32.281 19.574 -0.144 1 29.76 ? C MTX 188 A 1 HETATM 23 O O MTX . . . C 3 33.305 20.173 0.199 1 28.8 ? O MTX 188 A 1 HETATM 24 N N MTX . . . C 3 31.429 20.138 -1.001 1 32.02 ? N MTX 188 A 1 HETATM 25 C CA MTX . . . C 3 31.372 21.473 -1.609 1 33.29 ? CA MTX 188 A 1 HETATM 26 C CT MTX . . . C 3 29.979 22.092 -1.68 1 30.63 ? CT MTX 188 A 1 HETATM 27 O O1 MTX . . . C 3 29.819 23.316 -1.528 1 25.92 ? O1 MTX 188 A 1 HETATM 28 O O2 MTX . . . C 3 29.171 21.225 -2.032 1 31.58 ? O2 MTX 188 A 1 HETATM 29 C CB MTX . . . C 3 31.765 21.471 -3.069 1 39.7 ? CB MTX 188 A 1 HETATM 30 C CG MTX . . . C 3 32.925 22.383 -3.322 1 47.48 ? CG MTX 188 A 1 HETATM 31 C CD MTX . . . C 3 33.731 21.73 -4.351 1 50.02 ? CD MTX 188 A 1 HETATM 32 O OE1 MTX . . . C 3 34.641 20.789 -4.225 1 55.47 ? OE1 MTX 188 A 1 HETATM 33 O OE2 MTX . . . C 3 33.478 22.037 -5.608 1 50.7 ? OE2 MTX 188 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #