data_1DM2 # _model_server_result.job_id 6CmiRpiLRCPakwzZ9HfoiA _model_server_result.datetime_utc '2024-11-20 14:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1DM2 # _exptl.entry_id 1DM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(5-AMINO-4-OXO-4H-PYRAZOL-3-YL)-2-BROMO-4,5,6,7-TETRAHYDRO-3AH-PYRROLO[2,3-C]AZEPIN-8-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DM2 _cell.length_a 53.39 _cell.length_b 70.67 _cell.length_c 72.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H10 Br N5 O2' _chem_comp.formula_weight 324.133 _chem_comp.id HMD _chem_comp.mon_nstd_flag . _chem_comp.name 4-(5-AMINO-4-OXO-4H-PYRAZOL-3-YL)-2-BROMO-4,5,6,7-TETRAHYDRO-3AH-PYRROLO[2,3-C]AZEPIN-8-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HYMENIALDISINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C1 HMD sing 159 n n O1 C5 HMD doub 160 n n O2 C10 HMD doub 161 n n N1 C1 HMD sing 162 n n N1 C4 HMD doub 163 n n N2 C5 HMD sing 164 n n N2 C6 HMD sing 165 n n N2 HN2 HMD sing 166 n n N3 C10 HMD sing 167 n n N3 C11 HMD doub 168 n n N4 C9 HMD doub 169 n n N4 C11 HMD sing 170 n n N5 C11 HMD sing 171 n n N5 HN51 HMD sing 172 n n N5 HN52 HMD sing 173 n n C1 C2 HMD doub 174 n n C2 C3 HMD sing 175 n n C2 H2 HMD sing 176 n n C3 C4 HMD sing 177 n n C3 C8 HMD sing 178 n n C3 H3 HMD sing 179 n n C4 C5 HMD sing 180 n n C6 C7 HMD sing 181 n n C6 H61 HMD sing 182 n n C6 H62 HMD sing 183 n n C7 C8 HMD sing 184 n n C7 H71 HMD sing 185 n n C7 H72 HMD sing 186 n n C8 C9 HMD sing 187 n n C8 H8 HMD sing 188 n n C9 C10 HMD sing 189 n n # _atom_sites.entry_id 1DM2 _atom_sites.fract_transf_matrix[1][1] 0.01873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HMD A 1 400 400 HMD HMD . C 3 EDO A 1 401 401 EDO EGL . D 3 EDO A 1 402 402 EDO EGL . E 3 EDO A 1 403 403 EDO EGL . F 3 EDO A 1 404 404 EDO EGL . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 509 HOH HOH . G 4 HOH A 10 510 510 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 517 HOH HOH . G 4 HOH A 18 518 518 HOH HOH . G 4 HOH A 19 519 519 HOH HOH . G 4 HOH A 20 520 520 HOH HOH . G 4 HOH A 21 521 521 HOH HOH . G 4 HOH A 22 522 522 HOH HOH . G 4 HOH A 23 523 523 HOH HOH . G 4 HOH A 24 524 524 HOH HOH . G 4 HOH A 25 525 525 HOH HOH . G 4 HOH A 26 526 526 HOH HOH . G 4 HOH A 27 527 527 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 537 HOH HOH . G 4 HOH A 38 538 538 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . G 4 HOH A 52 552 552 HOH HOH . G 4 HOH A 53 553 553 HOH HOH . G 4 HOH A 54 554 554 HOH HOH . G 4 HOH A 55 555 555 HOH HOH . G 4 HOH A 56 556 556 HOH HOH . G 4 HOH A 57 557 557 HOH HOH . G 4 HOH A 58 558 558 HOH HOH . G 4 HOH A 59 559 559 HOH HOH . G 4 HOH A 60 560 560 HOH HOH . G 4 HOH A 61 561 561 HOH HOH . G 4 HOH A 62 562 562 HOH HOH . G 4 HOH A 63 563 563 HOH HOH . G 4 HOH A 64 564 564 HOH HOH . G 4 HOH A 65 565 565 HOH HOH . G 4 HOH A 66 566 566 HOH HOH . G 4 HOH A 67 567 567 HOH HOH . G 4 HOH A 68 568 568 HOH HOH . G 4 HOH A 69 569 569 HOH HOH . G 4 HOH A 70 570 570 HOH HOH . G 4 HOH A 71 571 571 HOH HOH . G 4 HOH A 72 572 572 HOH HOH . G 4 HOH A 73 573 573 HOH HOH . G 4 HOH A 74 574 574 HOH HOH . G 4 HOH A 75 575 575 HOH HOH . G 4 HOH A 76 576 576 HOH HOH . G 4 HOH A 77 577 577 HOH HOH . G 4 HOH A 78 578 578 HOH HOH . G 4 HOH A 79 579 579 HOH HOH . G 4 HOH A 80 580 580 HOH HOH . G 4 HOH A 81 581 581 HOH HOH . G 4 HOH A 82 582 582 HOH HOH . G 4 HOH A 83 583 583 HOH HOH . G 4 HOH A 84 584 584 HOH HOH . G 4 HOH A 85 585 585 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR1 HMD . . . B 2 23.12 26.871 28.136 1 63.13 ? BR1 HMD 400 A 1 HETATM 2 O O1 HMD . . . B 2 25.184 31.32 30.286 1 45.5 ? O1 HMD 400 A 1 HETATM 3 O O2 HMD . . . B 2 30.537 29.959 25.467 1 43.12 ? O2 HMD 400 A 1 HETATM 4 N N1 HMD . . . B 2 24.542 29.157 28.792 1 48.35 ? N1 HMD 400 A 1 HETATM 5 N N2 HMD . . . B 2 26.744 32.069 28.786 1 41.03 ? N2 HMD 400 A 1 HETATM 6 N N3 HMD . . . B 2 29.858 28.107 24.284 1 47.18 ? N3 HMD 400 A 1 HETATM 7 N N4 HMD . . . B 2 27.95 27.65 25.376 1 45.11 ? N4 HMD 400 A 1 HETATM 8 N N5 HMD . . . B 2 28.548 26.271 23.602 1 49.07 ? N5 HMD 400 A 1 HETATM 9 C C1 HMD . . . B 2 24.565 28.027 28.082 1 51.52 ? C1 HMD 400 A 1 HETATM 10 C C2 HMD . . . B 2 25.729 27.908 27.381 1 49.23 ? C2 HMD 400 A 1 HETATM 11 C C3 HMD . . . B 2 26.49 29.072 27.672 1 46.03 ? C3 HMD 400 A 1 HETATM 12 C C4 HMD . . . B 2 25.692 29.833 28.581 1 45.99 ? C4 HMD 400 A 1 HETATM 13 C C5 HMD . . . B 2 25.86 31.121 29.268 1 42.91 ? C5 HMD 400 A 1 HETATM 14 C C6 HMD . . . B 2 27.615 31.988 27.601 1 39.71 ? C6 HMD 400 A 1 HETATM 15 C C7 HMD . . . B 2 28.521 30.77 27.6 1 41.24 ? C7 HMD 400 A 1 HETATM 16 C C8 HMD . . . B 2 27.838 29.518 27.057 1 44.36 ? C8 HMD 400 A 1 HETATM 17 C C9 HMD . . . B 2 28.432 28.805 26.01 1 44.1 ? C9 HMD 400 A 1 HETATM 18 C C10 HMD . . . B 2 29.725 29.046 25.251 1 45.33 ? C10 HMD 400 A 1 HETATM 19 C C11 HMD . . . B 2 28.789 27.308 24.381 1 46.6 ? C11 HMD 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #