data_1DMH # _model_server_result.job_id pGYCEGw4u4bCThY10VXI5w _model_server_result.datetime_utc '2024-12-12 02:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":400}' # _entry.id 1DMH # _exptl.entry_id 1DMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.3 _cell.angle_gamma 90 _cell.entry_id 1DMH _cell.length_a 52.8 _cell.length_b 88 _cell.length_c 84.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 164 A TYR 164 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc2 A NE2 HIS 224 A HIS 224 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 226 A HIS 226 1_555 C FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 C FE FE . A FE 400 1_555 D O3 MCT . A MCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 C FE FE . A FE 400 1_555 D O4 MCT . A MCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc6 C FE FE . A FE 400 1_555 I O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc7 B OH TYR 164 B TYR 164 1_555 F FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc8 B NE2 HIS 224 B HIS 224 1_555 F FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 B NE2 HIS 226 B HIS 226 1_555 F FE FE . B FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc10 F FE FE . B FE 400 1_555 H O3 MCT . B MCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc11 F FE FE . B FE 400 1_555 H O4 MCT . B MCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 F FE FE . B FE 400 1_555 J O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DMH _atom_sites.fract_transf_matrix[1][1] 0.018939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 400 400 FE FE . D 3 MCT A 1 401 401 MCT MCT . E 4 LIO A 1 1999 999 LIO LIP . F 2 FE B 1 400 400 FE FE . G 4 LIO B 1 999 999 LIO LIP . H 3 MCT B 1 401 401 MCT MCT . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 502 502 HOH HOH . I 5 HOH A 3 506 504 HOH HOH . I 5 HOH A 4 508 506 HOH HOH . I 5 HOH A 5 513 511 HOH HOH . I 5 HOH A 6 515 513 HOH HOH . I 5 HOH A 7 517 515 HOH HOH . I 5 HOH A 8 519 517 HOH HOH . I 5 HOH A 9 521 519 HOH HOH . I 5 HOH A 10 524 522 HOH HOH . I 5 HOH A 11 528 526 HOH HOH . I 5 HOH A 12 529 527 HOH HOH . I 5 HOH A 13 531 529 HOH HOH . I 5 HOH A 14 535 533 HOH HOH . I 5 HOH A 15 538 536 HOH HOH . I 5 HOH A 16 540 538 HOH HOH . I 5 HOH A 17 541 539 HOH HOH . I 5 HOH A 18 542 540 HOH HOH . I 5 HOH A 19 543 541 HOH HOH . I 5 HOH A 20 548 546 HOH HOH . I 5 HOH A 21 549 547 HOH HOH . I 5 HOH A 22 551 549 HOH HOH . I 5 HOH A 23 553 551 HOH HOH . I 5 HOH A 24 554 552 HOH HOH . I 5 HOH A 25 558 556 HOH HOH . I 5 HOH A 26 559 557 HOH HOH . I 5 HOH A 27 560 558 HOH HOH . I 5 HOH A 28 563 561 HOH HOH . I 5 HOH A 29 566 564 HOH HOH . I 5 HOH A 30 567 565 HOH HOH . I 5 HOH A 31 570 568 HOH HOH . I 5 HOH A 32 573 571 HOH HOH . I 5 HOH A 33 574 572 HOH HOH . I 5 HOH A 34 575 573 HOH HOH . I 5 HOH A 35 576 574 HOH HOH . I 5 HOH A 36 577 575 HOH HOH . I 5 HOH A 37 578 576 HOH HOH . I 5 HOH A 38 582 580 HOH HOH . I 5 HOH A 39 583 581 HOH HOH . I 5 HOH A 40 588 586 HOH HOH . I 5 HOH A 41 589 587 HOH HOH . I 5 HOH A 42 591 589 HOH HOH . I 5 HOH A 43 593 591 HOH HOH . I 5 HOH A 44 594 592 HOH HOH . I 5 HOH A 45 597 595 HOH HOH . I 5 HOH A 46 598 596 HOH HOH . I 5 HOH A 47 599 597 HOH HOH . I 5 HOH A 48 600 598 HOH HOH . I 5 HOH A 49 601 599 HOH HOH . I 5 HOH A 50 602 600 HOH HOH . I 5 HOH A 51 603 601 HOH HOH . I 5 HOH A 52 604 602 HOH HOH . I 5 HOH A 53 607 605 HOH HOH . I 5 HOH A 54 608 606 HOH HOH . I 5 HOH A 55 609 607 HOH HOH . I 5 HOH A 56 611 609 HOH HOH . I 5 HOH A 57 615 613 HOH HOH . I 5 HOH A 58 619 617 HOH HOH . I 5 HOH A 59 621 619 HOH HOH . I 5 HOH A 60 625 623 HOH HOH . I 5 HOH A 61 627 625 HOH HOH . I 5 HOH A 62 632 630 HOH HOH . I 5 HOH A 63 633 631 HOH HOH . I 5 HOH A 64 641 639 HOH HOH . I 5 HOH A 65 646 644 HOH HOH . I 5 HOH A 66 648 646 HOH HOH . I 5 HOH A 67 650 648 HOH HOH . I 5 HOH A 68 653 651 HOH HOH . I 5 HOH A 69 655 653 HOH HOH . I 5 HOH A 70 657 655 HOH HOH . I 5 HOH A 71 658 656 HOH HOH . I 5 HOH A 72 659 657 HOH HOH . I 5 HOH A 73 661 659 HOH HOH . I 5 HOH A 74 662 660 HOH HOH . I 5 HOH A 75 664 662 HOH HOH . I 5 HOH A 76 665 663 HOH HOH . I 5 HOH A 77 667 665 HOH HOH . I 5 HOH A 78 669 667 HOH HOH . I 5 HOH A 79 670 668 HOH HOH . I 5 HOH A 80 673 671 HOH HOH . I 5 HOH A 81 676 674 HOH HOH . I 5 HOH A 82 677 675 HOH HOH . I 5 HOH A 83 678 676 HOH HOH . I 5 HOH A 84 679 677 HOH HOH . I 5 HOH A 85 680 678 HOH HOH . I 5 HOH A 86 686 684 HOH HOH . I 5 HOH A 87 687 685 HOH HOH . I 5 HOH A 88 688 686 HOH HOH . I 5 HOH A 89 690 688 HOH HOH . I 5 HOH A 90 691 689 HOH HOH . I 5 HOH A 91 696 694 HOH HOH . I 5 HOH A 92 698 696 HOH HOH . I 5 HOH A 93 699 697 HOH HOH . I 5 HOH A 94 701 699 HOH HOH . I 5 HOH A 95 703 701 HOH HOH . I 5 HOH A 96 704 702 HOH HOH . I 5 HOH A 97 707 705 HOH HOH . I 5 HOH A 98 708 706 HOH HOH . I 5 HOH A 99 710 708 HOH HOH . I 5 HOH A 100 711 709 HOH HOH . I 5 HOH A 101 713 711 HOH HOH . I 5 HOH A 102 714 712 HOH HOH . I 5 HOH A 103 715 713 HOH HOH . I 5 HOH A 104 720 718 HOH HOH . I 5 HOH A 105 721 719 HOH HOH . I 5 HOH A 106 722 720 HOH HOH . I 5 HOH A 107 723 721 HOH HOH . I 5 HOH A 108 724 722 HOH HOH . I 5 HOH A 109 725 723 HOH HOH . I 5 HOH A 110 726 724 HOH HOH . I 5 HOH A 111 727 725 HOH HOH . I 5 HOH A 112 728 726 HOH HOH . I 5 HOH A 113 729 727 HOH HOH . I 5 HOH A 114 730 728 HOH HOH . I 5 HOH A 115 731 729 HOH HOH . I 5 HOH A 116 732 730 HOH HOH . I 5 HOH A 117 733 731 HOH HOH . I 5 HOH A 118 734 732 HOH HOH . I 5 HOH A 119 735 733 HOH HOH . I 5 HOH A 120 736 734 HOH HOH . I 5 HOH A 121 737 735 HOH HOH . I 5 HOH A 122 738 736 HOH HOH . I 5 HOH A 123 744 742 HOH HOH . I 5 HOH A 124 747 745 HOH HOH . I 5 HOH A 125 748 746 HOH HOH . I 5 HOH A 126 768 766 HOH HOH . J 5 HOH B 1 503 501 HOH HOH . J 5 HOH B 2 504 502 HOH HOH . J 5 HOH B 3 505 503 HOH HOH . J 5 HOH B 4 507 505 HOH HOH . J 5 HOH B 5 509 507 HOH HOH . J 5 HOH B 6 510 508 HOH HOH . J 5 HOH B 7 511 509 HOH HOH . J 5 HOH B 8 512 510 HOH HOH . J 5 HOH B 9 514 512 HOH HOH . J 5 HOH B 10 516 514 HOH HOH . J 5 HOH B 11 518 516 HOH HOH . J 5 HOH B 12 520 518 HOH HOH . J 5 HOH B 13 522 520 HOH HOH . J 5 HOH B 14 523 521 HOH HOH . J 5 HOH B 15 525 523 HOH HOH . J 5 HOH B 16 526 524 HOH HOH . J 5 HOH B 17 527 525 HOH HOH . J 5 HOH B 18 530 528 HOH HOH . J 5 HOH B 19 532 530 HOH HOH . J 5 HOH B 20 533 531 HOH HOH . J 5 HOH B 21 534 532 HOH HOH . J 5 HOH B 22 536 534 HOH HOH . J 5 HOH B 23 537 535 HOH HOH . J 5 HOH B 24 539 537 HOH HOH . J 5 HOH B 25 544 542 HOH HOH . J 5 HOH B 26 545 543 HOH HOH . J 5 HOH B 27 546 544 HOH HOH . J 5 HOH B 28 547 545 HOH HOH . J 5 HOH B 29 550 548 HOH HOH . J 5 HOH B 30 552 550 HOH HOH . J 5 HOH B 31 555 553 HOH HOH . J 5 HOH B 32 556 554 HOH HOH . J 5 HOH B 33 557 555 HOH HOH . J 5 HOH B 34 561 559 HOH HOH . J 5 HOH B 35 562 560 HOH HOH . J 5 HOH B 36 564 562 HOH HOH . J 5 HOH B 37 565 563 HOH HOH . J 5 HOH B 38 568 566 HOH HOH . J 5 HOH B 39 569 567 HOH HOH . J 5 HOH B 40 571 569 HOH HOH . J 5 HOH B 41 572 570 HOH HOH . J 5 HOH B 42 579 577 HOH HOH . J 5 HOH B 43 580 578 HOH HOH . J 5 HOH B 44 581 579 HOH HOH . J 5 HOH B 45 584 582 HOH HOH . J 5 HOH B 46 585 583 HOH HOH . J 5 HOH B 47 586 584 HOH HOH . J 5 HOH B 48 587 585 HOH HOH . J 5 HOH B 49 590 588 HOH HOH . J 5 HOH B 50 592 590 HOH HOH . J 5 HOH B 51 595 593 HOH HOH . J 5 HOH B 52 596 594 HOH HOH . J 5 HOH B 53 605 603 HOH HOH . J 5 HOH B 54 606 604 HOH HOH . J 5 HOH B 55 610 608 HOH HOH . J 5 HOH B 56 612 610 HOH HOH . J 5 HOH B 57 613 611 HOH HOH . J 5 HOH B 58 614 612 HOH HOH . J 5 HOH B 59 616 614 HOH HOH . J 5 HOH B 60 617 615 HOH HOH . J 5 HOH B 61 618 616 HOH HOH . J 5 HOH B 62 620 618 HOH HOH . J 5 HOH B 63 622 620 HOH HOH . J 5 HOH B 64 623 621 HOH HOH . J 5 HOH B 65 624 622 HOH HOH . J 5 HOH B 66 626 624 HOH HOH . J 5 HOH B 67 628 626 HOH HOH . J 5 HOH B 68 629 627 HOH HOH . J 5 HOH B 69 630 628 HOH HOH . J 5 HOH B 70 631 629 HOH HOH . J 5 HOH B 71 634 632 HOH HOH . J 5 HOH B 72 635 633 HOH HOH . J 5 HOH B 73 636 634 HOH HOH . J 5 HOH B 74 637 635 HOH HOH . J 5 HOH B 75 638 636 HOH HOH . J 5 HOH B 76 639 637 HOH HOH . J 5 HOH B 77 640 638 HOH HOH . J 5 HOH B 78 642 640 HOH HOH . J 5 HOH B 79 643 641 HOH HOH . J 5 HOH B 80 644 642 HOH HOH . J 5 HOH B 81 645 643 HOH HOH . J 5 HOH B 82 647 645 HOH HOH . J 5 HOH B 83 649 647 HOH HOH . J 5 HOH B 84 651 649 HOH HOH . J 5 HOH B 85 652 650 HOH HOH . J 5 HOH B 86 654 652 HOH HOH . J 5 HOH B 87 656 654 HOH HOH . J 5 HOH B 88 660 658 HOH HOH . J 5 HOH B 89 663 661 HOH HOH . J 5 HOH B 90 666 664 HOH HOH . J 5 HOH B 91 668 666 HOH HOH . J 5 HOH B 92 671 669 HOH HOH . J 5 HOH B 93 672 670 HOH HOH . J 5 HOH B 94 674 672 HOH HOH . J 5 HOH B 95 675 673 HOH HOH . J 5 HOH B 96 681 679 HOH HOH . J 5 HOH B 97 682 680 HOH HOH . J 5 HOH B 98 683 681 HOH HOH . J 5 HOH B 99 684 682 HOH HOH . J 5 HOH B 100 685 683 HOH HOH . J 5 HOH B 101 689 687 HOH HOH . J 5 HOH B 102 692 690 HOH HOH . J 5 HOH B 103 693 691 HOH HOH . J 5 HOH B 104 694 692 HOH HOH . J 5 HOH B 105 695 693 HOH HOH . J 5 HOH B 106 697 695 HOH HOH . J 5 HOH B 107 700 698 HOH HOH . J 5 HOH B 108 702 700 HOH HOH . J 5 HOH B 109 705 703 HOH HOH . J 5 HOH B 110 706 704 HOH HOH . J 5 HOH B 111 709 707 HOH HOH . J 5 HOH B 112 712 710 HOH HOH . J 5 HOH B 113 716 714 HOH HOH . J 5 HOH B 114 717 715 HOH HOH . J 5 HOH B 115 718 716 HOH HOH . J 5 HOH B 116 719 717 HOH HOH . J 5 HOH B 117 739 737 HOH HOH . J 5 HOH B 118 740 738 HOH HOH . J 5 HOH B 119 741 739 HOH HOH . J 5 HOH B 120 742 740 HOH HOH . J 5 HOH B 121 743 741 HOH HOH . J 5 HOH B 122 745 743 HOH HOH . J 5 HOH B 123 746 744 HOH HOH . J 5 HOH B 124 749 747 HOH HOH . J 5 HOH B 125 750 748 HOH HOH . J 5 HOH B 126 751 749 HOH HOH . J 5 HOH B 127 752 750 HOH HOH . J 5 HOH B 128 753 751 HOH HOH . J 5 HOH B 129 754 752 HOH HOH . J 5 HOH B 130 755 753 HOH HOH . J 5 HOH B 131 756 754 HOH HOH . J 5 HOH B 132 757 755 HOH HOH . J 5 HOH B 133 758 756 HOH HOH . J 5 HOH B 134 759 757 HOH HOH . J 5 HOH B 135 760 758 HOH HOH . J 5 HOH B 136 761 759 HOH HOH . J 5 HOH B 137 762 760 HOH HOH . J 5 HOH B 138 763 761 HOH HOH . J 5 HOH B 139 764 762 HOH HOH . J 5 HOH B 140 765 763 HOH HOH . J 5 HOH B 141 766 764 HOH HOH . J 5 HOH B 142 767 765 HOH HOH . J 5 HOH B 143 769 767 HOH HOH . J 5 HOH B 144 770 768 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -19.039 _atom_site.Cartn_y 81.446 _atom_site.Cartn_z 113.098 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 518 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #