data_1DMP
#
_model_server_result.job_id            CnLQDmMAn3T5Fk6RelaLSQ 
_model_server_result.datetime_utc      '2025-02-28 02:53:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dmp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":450}' 
#
_entry.id    1DMP 
#
_exptl.entry_id    1DMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              536.664 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DMP 
_cell.length_a            62.8 
_cell.length_b            62.8 
_cell.length_c            83.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 66 A ILE 66 1_555 A N CSO 67 A CSO 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C CSO 67 A CSO 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale3 B C ILE 66 B ILE 66 1_555 B N CSO 67 B CSO 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 B C CSO 67 B CSO 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C33 H36 N4 O3' 
_chem_comp.formula_weight    536.664 
_chem_comp.id                DMQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DMP450(INHIBITOR OF DUPONT MERCK)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 DMQ doub 97 n n 
C1 N2 DMQ sing 98 n n 
C1 N7 DMQ sing 99 n n 
N2 C2 DMQ sing 100 n n 
N2 C3 DMQ sing 101 n n 
C2 C20 DMQ sing 102 n n 
C2 H21A DMQ sing 103 n n 
C2 H22A DMQ sing 104 n n 
C3 C4 DMQ sing 105 n n 
C3 C31 DMQ sing 106 n n 
C3 H3 DMQ sing 107 n n 
C4 O4 DMQ sing 108 n n 
C4 C5 DMQ sing 109 n n 
C4 H4 DMQ sing 110 n n 
O4 HO4 DMQ sing 111 n n 
C5 O5 DMQ sing 112 n n 
C5 C6 DMQ sing 113 n n 
C5 H5 DMQ sing 114 n n 
O5 HO5 DMQ sing 115 n n 
C6 N7 DMQ sing 116 n n 
C6 C61 DMQ sing 117 n n 
C6 H6 DMQ sing 118 n n 
C7 N7 DMQ sing 119 n n 
C7 C70 DMQ sing 120 n n 
C7 H71A DMQ sing 121 n n 
C7 H72 DMQ sing 122 n n 
C20 C21 DMQ doub 123 n y 
C20 C29 DMQ sing 124 n y 
C21 C22 DMQ sing 125 n y 
C21 H21 DMQ sing 126 n n 
C22 C23 DMQ doub 127 n y 
C22 H22 DMQ sing 128 n n 
C23 C28 DMQ sing 129 n y 
C23 H23 DMQ sing 130 n n 
C28 N29 DMQ sing 131 n n 
C28 C29 DMQ doub 132 n y 
N29 HN21 DMQ sing 133 n n 
N29 HN22 DMQ sing 134 n n 
C29 H29 DMQ sing 135 n n 
C31 C32 DMQ sing 136 n n 
C31 H311 DMQ sing 137 n n 
C31 H312 DMQ sing 138 n n 
C32 C33 DMQ doub 139 n y 
C32 C37 DMQ sing 140 n y 
C33 C34 DMQ sing 141 n y 
C33 H33 DMQ sing 142 n n 
C34 C35 DMQ doub 143 n y 
C34 H34 DMQ sing 144 n n 
C35 C36 DMQ sing 145 n y 
C35 H35 DMQ sing 146 n n 
C36 C37 DMQ doub 147 n y 
C36 H36 DMQ sing 148 n n 
C37 H37 DMQ sing 149 n n 
C61 C62 DMQ sing 150 n n 
C61 H611 DMQ sing 151 n n 
C61 H612 DMQ sing 152 n n 
C62 C63 DMQ doub 153 n y 
C62 C67 DMQ sing 154 n y 
C63 C64 DMQ sing 155 n y 
C63 H63 DMQ sing 156 n n 
C64 C65 DMQ doub 157 n y 
C64 H64 DMQ sing 158 n n 
C65 C66 DMQ sing 159 n y 
C65 H65 DMQ sing 160 n n 
C66 C67 DMQ doub 161 n y 
C66 H66 DMQ sing 162 n n 
C67 H67 DMQ sing 163 n n 
C70 C71 DMQ doub 164 n y 
C70 C79 DMQ sing 165 n y 
C71 C72 DMQ sing 166 n y 
C71 H71 DMQ sing 167 n n 
C72 N79 DMQ sing 168 n n 
C72 C77 DMQ doub 169 n y 
N79 HN71 DMQ sing 170 n n 
N79 HN72 DMQ sing 171 n n 
C77 C78 DMQ sing 172 n y 
C77 H77 DMQ sing 173 n n 
C78 C79 DMQ doub 174 n y 
C78 H78 DMQ sing 175 n n 
C79 H79 DMQ sing 176 n n 
#
_atom_sites.entry_id                     1DMP 
_atom_sites.fract_transf_matrix[1][1]    0.015924 
_atom_sites.fract_transf_matrix[1][2]    0.009193 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           DMQ 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      450 
_pdbx_nonpoly_scheme.auth_seq_num     450 
_pdbx_nonpoly_scheme.pdb_mon_id       DMQ 
_pdbx_nonpoly_scheme.auth_mon_id      450 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DMQ . . . C 2 -8.89 15.322 27.739 1 13.79 ? C1 DMQ 450 B 1 
HETATM 2 O O1 DMQ . . . C 2 -8.408 14.213 27.62 1 14.91 ? O1 DMQ 450 B 1 
HETATM 3 N N2 DMQ . . . C 2 -8.609 16.169 26.74 1 17.06 ? N2 DMQ 450 B 1 
HETATM 4 C C2 DMQ . . . C 2 -8.033 15.586 25.485 1 13.21 ? C2 DMQ 450 B 1 
HETATM 5 C C3 DMQ . . . C 2 -8.678 17.649 26.914 1 14.25 ? C3 DMQ 450 B 1 
HETATM 6 C C4 DMQ . . . C 2 -10.018 18.272 27.161 1 14.4 ? C4 DMQ 450 B 1 
HETATM 7 O O4 DMQ . . . C 2 -9.786 19.625 26.924 1 14.13 ? O4 DMQ 450 B 1 
HETATM 8 C C5 DMQ . . . C 2 -10.591 18.023 28.535 1 13.71 ? C5 DMQ 450 B 1 
HETATM 9 O O5 DMQ . . . C 2 -11.823 18.647 28.554 1 14.48 ? O5 DMQ 450 B 1 
HETATM 10 C C6 DMQ . . . C 2 -10.83 16.559 28.855 1 13.93 ? C6 DMQ 450 B 1 
HETATM 11 C C7 DMQ . . . C 2 -9.413 14.875 30.096 1 14.14 ? C7 DMQ 450 B 1 
HETATM 12 N N7 DMQ . . . C 2 -9.636 15.647 28.845 1 15.1 ? N7 DMQ 450 B 1 
HETATM 13 C C20 DMQ . . . C 2 -8.717 16.004 24.221 1 12.34 ? C20 DMQ 450 B 1 
HETATM 14 C C21 DMQ . . . C 2 -10.116 15.918 24.124 1 15.48 ? C21 DMQ 450 B 1 
HETATM 15 C C22 DMQ . . . C 2 -10.814 16.327 22.975 1 12.56 ? C22 DMQ 450 B 1 
HETATM 16 C C23 DMQ . . . C 2 -10.079 16.849 21.907 1 15.01 ? C23 DMQ 450 B 1 
HETATM 17 C C28 DMQ . . . C 2 -8.669 16.959 21.996 1 14.59 ? C28 DMQ 450 B 1 
HETATM 18 N N29 DMQ . . . C 2 -7.981 17.669 20.975 1 13.45 ? N29 DMQ 450 B 1 
HETATM 19 C C29 DMQ . . . C 2 -7.982 16.516 23.146 1 14.67 ? C29 DMQ 450 B 1 
HETATM 20 C C31 DMQ . . . C 2 -7.525 18.131 27.814 1 13.73 ? C31 DMQ 450 B 1 
HETATM 21 C C32 DMQ . . . C 2 -6.244 18.138 26.992 1 15.12 ? C32 DMQ 450 B 1 
HETATM 22 C C33 DMQ . . . C 2 -5.223 17.185 27.232 1 13.38 ? C33 DMQ 450 B 1 
HETATM 23 C C34 DMQ . . . C 2 -4.059 17.178 26.454 1 13.02 ? C34 DMQ 450 B 1 
HETATM 24 C C35 DMQ . . . C 2 -3.921 18.118 25.42 1 14.45 ? C35 DMQ 450 B 1 
HETATM 25 C C36 DMQ . . . C 2 -4.927 19.075 25.152 1 14.93 ? C36 DMQ 450 B 1 
HETATM 26 C C37 DMQ . . . C 2 -6.091 19.088 25.947 1 15.72 ? C37 DMQ 450 B 1 
HETATM 27 C C61 DMQ . . . C 2 -12.02 15.857 28.104 1 13.77 ? C61 DMQ 450 B 1 
HETATM 28 C C62 DMQ . . . C 2 -12.541 14.596 28.791 1 14.7 ? C62 DMQ 450 B 1 
HETATM 29 C C63 DMQ . . . C 2 -13.371 14.7 29.926 1 13.5 ? C63 DMQ 450 B 1 
HETATM 30 C C64 DMQ . . . C 2 -13.778 13.548 30.621 1 12.51 ? C64 DMQ 450 B 1 
HETATM 31 C C65 DMQ . . . C 2 -13.357 12.28 30.172 1 14.96 ? C65 DMQ 450 B 1 
HETATM 32 C C66 DMQ . . . C 2 -12.536 12.147 29.028 1 15 ? C66 DMQ 450 B 1 
HETATM 33 C C67 DMQ . . . C 2 -12.132 13.312 28.339 1 15.75 ? C67 DMQ 450 B 1 
HETATM 34 C C70 DMQ . . . C 2 -9.51 15.583 31.43 1 13.69 ? C70 DMQ 450 B 1 
HETATM 35 C C71 DMQ . . . C 2 -10.455 15.134 32.38 1 13.58 ? C71 DMQ 450 B 1 
HETATM 36 C C72 DMQ . . . C 2 -10.486 15.697 33.669 1 13.89 ? C72 DMQ 450 B 1 
HETATM 37 N N79 DMQ . . . C 2 -11.411 15.221 34.649 1 14.26 ? N79 DMQ 450 B 1 
HETATM 38 C C77 DMQ . . . C 2 -9.581 16.725 34.002 1 16.01 ? C77 DMQ 450 B 1 
HETATM 39 C C78 DMQ . . . C 2 -8.641 17.201 33.048 1 13.88 ? C78 DMQ 450 B 1 
HETATM 40 C C79 DMQ . . . C 2 -8.607 16.622 31.763 1 14.19 ? C79 DMQ 450 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           40 
#