data_1DMW # _model_server_result.job_id 2ky9vRw8oWC66WgEj-zbsA _model_server_result.datetime_utc '2024-11-17 13:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 1DMW # _exptl.entry_id 1DMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DMW _cell.length_a 66.357 _cell.length_b 107.991 _cell.length_c 124.591 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 168 A HIS 285 1_555 B FE FE . A FE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 A NE2 HIS 173 A HIS 290 1_555 B FE FE . A FE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A OE2 GLU 213 A GLU 330 1_555 B FE FE . A FE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 B FE FE . A FE 425 1_555 D O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 B FE FE . A FE 425 1_555 D O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 B FE FE . A FE 425 1_555 D O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 1DMW _atom_sites.fract_transf_matrix[1][1] 0.01507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 425 425 FE FE . C 3 HBI A 1 700 700 HBI HBI . D 4 HOH A 1 426 426 HOH WAT . D 4 HOH A 2 427 427 HOH WAT . D 4 HOH A 3 428 428 HOH WAT . D 4 HOH A 4 429 429 HOH WAT . D 4 HOH A 5 430 430 HOH WAT . D 4 HOH A 6 431 431 HOH WAT . D 4 HOH A 7 432 432 HOH WAT . D 4 HOH A 8 433 433 HOH WAT . D 4 HOH A 9 434 434 HOH WAT . D 4 HOH A 10 435 435 HOH WAT . D 4 HOH A 11 436 436 HOH WAT . D 4 HOH A 12 437 437 HOH WAT . D 4 HOH A 13 438 438 HOH WAT . D 4 HOH A 14 439 439 HOH WAT . D 4 HOH A 15 440 440 HOH WAT . D 4 HOH A 16 441 441 HOH WAT . D 4 HOH A 17 442 442 HOH WAT . D 4 HOH A 18 443 443 HOH WAT . D 4 HOH A 19 444 444 HOH WAT . D 4 HOH A 20 445 445 HOH WAT . D 4 HOH A 21 446 446 HOH WAT . D 4 HOH A 22 447 447 HOH WAT . D 4 HOH A 23 448 448 HOH WAT . D 4 HOH A 24 449 449 HOH WAT . D 4 HOH A 25 450 450 HOH WAT . D 4 HOH A 26 451 451 HOH WAT . D 4 HOH A 27 452 452 HOH WAT . D 4 HOH A 28 453 453 HOH WAT . D 4 HOH A 29 454 454 HOH WAT . D 4 HOH A 30 455 455 HOH WAT . D 4 HOH A 31 456 456 HOH WAT . D 4 HOH A 32 457 457 HOH WAT . D 4 HOH A 33 458 458 HOH WAT . D 4 HOH A 34 459 459 HOH WAT . D 4 HOH A 35 460 460 HOH WAT . D 4 HOH A 36 461 461 HOH WAT . D 4 HOH A 37 462 462 HOH WAT . D 4 HOH A 38 463 463 HOH WAT . D 4 HOH A 39 464 464 HOH WAT . D 4 HOH A 40 465 465 HOH WAT . D 4 HOH A 41 466 466 HOH WAT . D 4 HOH A 42 467 467 HOH WAT . D 4 HOH A 43 468 468 HOH WAT . D 4 HOH A 44 469 469 HOH WAT . D 4 HOH A 45 470 470 HOH WAT . D 4 HOH A 46 471 471 HOH WAT . D 4 HOH A 47 472 472 HOH WAT . D 4 HOH A 48 473 473 HOH WAT . D 4 HOH A 49 474 474 HOH WAT . D 4 HOH A 50 475 475 HOH WAT . D 4 HOH A 51 476 476 HOH WAT . D 4 HOH A 52 477 477 HOH WAT . D 4 HOH A 53 478 478 HOH WAT . D 4 HOH A 54 479 479 HOH WAT . D 4 HOH A 55 480 480 HOH WAT . D 4 HOH A 56 481 481 HOH WAT . D 4 HOH A 57 482 482 HOH WAT . D 4 HOH A 58 483 483 HOH WAT . D 4 HOH A 59 484 484 HOH WAT . D 4 HOH A 60 485 485 HOH WAT . D 4 HOH A 61 486 486 HOH WAT . D 4 HOH A 62 487 487 HOH WAT . D 4 HOH A 63 488 488 HOH WAT . D 4 HOH A 64 489 489 HOH WAT . D 4 HOH A 65 490 490 HOH WAT . D 4 HOH A 66 491 491 HOH WAT . D 4 HOH A 67 492 492 HOH WAT . D 4 HOH A 68 493 493 HOH WAT . D 4 HOH A 69 494 494 HOH WAT . D 4 HOH A 70 495 495 HOH WAT . D 4 HOH A 71 496 496 HOH WAT . D 4 HOH A 72 497 497 HOH WAT . D 4 HOH A 73 498 498 HOH WAT . D 4 HOH A 74 499 499 HOH WAT . D 4 HOH A 75 500 500 HOH WAT . D 4 HOH A 76 501 501 HOH WAT . D 4 HOH A 77 502 502 HOH WAT . D 4 HOH A 78 503 503 HOH WAT . D 4 HOH A 79 504 504 HOH WAT . D 4 HOH A 80 505 505 HOH WAT . D 4 HOH A 81 506 506 HOH WAT . D 4 HOH A 82 507 507 HOH WAT . D 4 HOH A 83 508 508 HOH WAT . D 4 HOH A 84 509 509 HOH WAT . D 4 HOH A 85 510 510 HOH WAT . D 4 HOH A 86 511 511 HOH WAT . D 4 HOH A 87 512 512 HOH WAT . D 4 HOH A 88 513 513 HOH WAT . D 4 HOH A 89 514 514 HOH WAT . D 4 HOH A 90 515 515 HOH WAT . D 4 HOH A 91 516 516 HOH WAT . D 4 HOH A 92 517 517 HOH WAT . D 4 HOH A 93 518 518 HOH WAT . D 4 HOH A 94 519 519 HOH WAT . D 4 HOH A 95 520 520 HOH WAT . D 4 HOH A 96 521 521 HOH WAT . D 4 HOH A 97 522 522 HOH WAT . D 4 HOH A 98 523 523 HOH WAT . D 4 HOH A 99 524 524 HOH WAT . D 4 HOH A 100 525 525 HOH WAT . D 4 HOH A 101 526 526 HOH WAT . D 4 HOH A 102 527 527 HOH WAT . D 4 HOH A 103 528 528 HOH WAT . D 4 HOH A 104 529 529 HOH WAT . D 4 HOH A 105 530 530 HOH WAT . D 4 HOH A 106 531 531 HOH WAT . D 4 HOH A 107 532 532 HOH WAT . D 4 HOH A 108 533 533 HOH WAT . D 4 HOH A 109 534 534 HOH WAT . D 4 HOH A 110 535 535 HOH WAT . D 4 HOH A 111 536 536 HOH WAT . D 4 HOH A 112 537 537 HOH WAT . D 4 HOH A 113 538 538 HOH WAT . D 4 HOH A 114 539 539 HOH WAT . D 4 HOH A 115 540 540 HOH WAT . D 4 HOH A 116 541 541 HOH WAT . D 4 HOH A 117 542 542 HOH WAT . D 4 HOH A 118 543 543 HOH WAT . D 4 HOH A 119 544 544 HOH WAT . D 4 HOH A 120 545 545 HOH WAT . D 4 HOH A 121 546 546 HOH WAT . D 4 HOH A 122 547 547 HOH WAT . D 4 HOH A 123 549 549 HOH WAT . D 4 HOH A 124 550 550 HOH WAT . D 4 HOH A 125 551 551 HOH WAT . D 4 HOH A 126 552 552 HOH WAT . D 4 HOH A 127 553 553 HOH WAT . D 4 HOH A 128 554 554 HOH WAT . D 4 HOH A 129 555 555 HOH WAT . D 4 HOH A 130 556 556 HOH WAT . D 4 HOH A 131 557 557 HOH WAT . D 4 HOH A 132 558 558 HOH WAT . D 4 HOH A 133 559 559 HOH WAT . D 4 HOH A 134 560 560 HOH WAT . D 4 HOH A 135 561 561 HOH WAT . D 4 HOH A 136 562 562 HOH WAT . D 4 HOH A 137 564 564 HOH WAT . D 4 HOH A 138 565 565 HOH WAT . D 4 HOH A 139 566 566 HOH WAT . D 4 HOH A 140 567 567 HOH WAT . D 4 HOH A 141 569 569 HOH WAT . D 4 HOH A 142 570 570 HOH WAT . D 4 HOH A 143 571 571 HOH WAT . D 4 HOH A 144 572 572 HOH WAT . D 4 HOH A 145 573 573 HOH WAT . D 4 HOH A 146 574 574 HOH WAT . D 4 HOH A 147 575 575 HOH WAT . D 4 HOH A 148 576 576 HOH WAT . D 4 HOH A 149 577 577 HOH WAT . D 4 HOH A 150 578 578 HOH WAT . D 4 HOH A 151 579 579 HOH WAT . D 4 HOH A 152 580 580 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . C 3 -7.547 22.66 7.322 0.5 35.42 ? N1 HBI 700 A 1 HETATM 2 N N2 HBI . . . C 3 -6.723 20.566 7.589 0.5 37.69 ? N2 HBI 700 A 1 HETATM 3 C C2 HBI . . . C 3 -6.461 21.896 7.408 0.5 37.24 ? C2 HBI 700 A 1 HETATM 4 N N3 HBI . . . C 3 -5.18 22.322 7.343 0.5 36.68 ? N3 HBI 700 A 1 HETATM 5 C C4 HBI . . . C 3 -4.925 23.657 7.175 0.5 35.95 ? C4 HBI 700 A 1 HETATM 6 O O4 HBI . . . C 3 -3.597 23.994 7.123 0.5 37.79 ? O4 HBI 700 A 1 HETATM 7 C C4A HBI . . . C 3 -6.059 24.657 7.072 0.5 35.88 ? C4A HBI 700 A 1 HETATM 8 C C8A HBI . . . C 3 -7.406 23.997 7.155 0.5 34.96 ? C8A HBI 700 A 1 HETATM 9 N N8 HBI . . . C 3 -8.648 24.788 7.069 0.5 34.08 ? N8 HBI 700 A 1 HETATM 10 C C7 HBI . . . C 3 -8.539 26.306 6.892 0.5 33.68 ? C7 HBI 700 A 1 HETATM 11 C C6 HBI . . . C 3 -7.125 26.973 6.808 0.5 34.29 ? C6 HBI 700 A 1 HETATM 12 N N5 HBI . . . C 3 -5.987 26.165 6.896 0.5 34.43 ? N5 HBI 700 A 1 HETATM 13 C C9 HBI . . . C 3 -7.073 28.56 6.64 0.5 32.73 ? C9 HBI 700 A 1 HETATM 14 O O9 HBI . . . C 3 -6.575 29.12 7.847 0.5 33.37 ? O9 HBI 700 A 1 HETATM 15 C C10 HBI . . . C 3 -6.273 29.063 5.304 0.5 34.16 ? C10 HBI 700 A 1 HETATM 16 O O10 HBI . . . C 3 -6.205 30.567 5.199 0.5 27.82 ? O10 HBI 700 A 1 HETATM 17 C C11 HBI . . . C 3 -4.793 28.503 5.236 0.5 33.05 ? C11 HBI 700 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 734 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 17 #