data_1DMX # _model_server_result.job_id ceTnglX-AG9hmZq6gdG-UA _model_server_result.datetime_utc '2024-11-25 04:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":280}' # _entry.id 1DMX # _exptl.entry_id 1DMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.65 _cell.angle_beta 75.26 _cell.angle_gamma 75.21 _cell.entry_id 1DMX _cell.length_a 48.69 _cell.length_b 60.37 _cell.length_c 60.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 73 A HIS 94 1_555 C ZN ZN . A ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A NE2 HIS 75 A HIS 96 1_555 C ZN ZN . A ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 A ND1 HIS 98 A HIS 119 1_555 C ZN ZN . A ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 C ZN ZN . A ZN 280 1_555 E O HOH . A HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 B NE2 HIS 73 B HIS 94 1_555 D ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B NE2 HIS 75 B HIS 96 1_555 D ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 B ND1 HIS 98 B HIS 119 1_555 D ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 D ZN ZN . B ZN 280 1_555 F O HOH . B HOH 781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DMX _atom_sites.fract_transf_matrix[1][1] 0.020538 _atom_sites.fract_transf_matrix[1][2] -0.005423 _atom_sites.fract_transf_matrix[1][3] -0.003797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017132 _atom_sites.fract_transf_matrix[2][3] -0.006137 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 280 280 ZN ZN . D 2 ZN B 1 280 280 ZN ZN . E 3 HOH A 1 281 281 HOH HOH . E 3 HOH A 2 282 282 HOH HOH . E 3 HOH A 3 283 283 HOH HOH . E 3 HOH A 4 289 289 HOH HOH . E 3 HOH A 5 292 292 HOH HOH . E 3 HOH A 6 293 293 HOH HOH . E 3 HOH A 7 295 295 HOH HOH . E 3 HOH A 8 296 296 HOH HOH . E 3 HOH A 9 297 297 HOH HOH . E 3 HOH A 10 300 300 HOH HOH . E 3 HOH A 11 301 301 HOH HOH . E 3 HOH A 12 302 302 HOH HOH . E 3 HOH A 13 303 303 HOH HOH . E 3 HOH A 14 305 305 HOH HOH . E 3 HOH A 15 306 306 HOH HOH . E 3 HOH A 16 307 307 HOH HOH . E 3 HOH A 17 308 308 HOH HOH . E 3 HOH A 18 311 311 HOH HOH . E 3 HOH A 19 312 312 HOH HOH . E 3 HOH A 20 313 313 HOH HOH . E 3 HOH A 21 314 314 HOH HOH . E 3 HOH A 22 315 315 HOH HOH . E 3 HOH A 23 316 316 HOH HOH . E 3 HOH A 24 317 317 HOH HOH . E 3 HOH A 25 318 318 HOH HOH . E 3 HOH A 26 319 319 HOH HOH . E 3 HOH A 27 320 320 HOH HOH . E 3 HOH A 28 329 329 HOH HOH . E 3 HOH A 29 334 334 HOH HOH . E 3 HOH A 30 337 337 HOH HOH . E 3 HOH A 31 343 343 HOH HOH . E 3 HOH A 32 344 344 HOH HOH . E 3 HOH A 33 345 345 HOH HOH . E 3 HOH A 34 349 349 HOH HOH . E 3 HOH A 35 353 353 HOH HOH . E 3 HOH A 36 354 354 HOH HOH . E 3 HOH A 37 355 355 HOH HOH . E 3 HOH A 38 356 356 HOH HOH . E 3 HOH A 39 357 357 HOH HOH . E 3 HOH A 40 359 359 HOH HOH . E 3 HOH A 41 361 361 HOH HOH . E 3 HOH A 42 362 362 HOH HOH . E 3 HOH A 43 363 363 HOH HOH . E 3 HOH A 44 364 364 HOH HOH . E 3 HOH A 45 365 365 HOH HOH . E 3 HOH A 46 367 367 HOH HOH . E 3 HOH A 47 368 368 HOH HOH . E 3 HOH A 48 369 369 HOH HOH . E 3 HOH A 49 370 370 HOH HOH . E 3 HOH A 50 373 373 HOH HOH . E 3 HOH A 51 375 375 HOH HOH . E 3 HOH A 52 376 376 HOH HOH . E 3 HOH A 53 377 377 HOH HOH . E 3 HOH A 54 379 379 HOH HOH . E 3 HOH A 55 380 380 HOH HOH . E 3 HOH A 56 381 381 HOH HOH . E 3 HOH A 57 383 383 HOH HOH . E 3 HOH A 58 384 384 HOH HOH . E 3 HOH A 59 385 385 HOH HOH . E 3 HOH A 60 387 387 HOH HOH . E 3 HOH A 61 388 388 HOH HOH . E 3 HOH A 62 389 389 HOH HOH . E 3 HOH A 63 812 812 HOH HOH . F 3 HOH B 1 327 327 HOH HOH . F 3 HOH B 2 781 781 HOH HOH . F 3 HOH B 3 783 783 HOH HOH . F 3 HOH B 4 784 784 HOH HOH . F 3 HOH B 5 786 786 HOH HOH . F 3 HOH B 6 787 787 HOH HOH . F 3 HOH B 7 789 789 HOH HOH . F 3 HOH B 8 792 792 HOH HOH . F 3 HOH B 9 796 796 HOH HOH . F 3 HOH B 10 799 799 HOH HOH . F 3 HOH B 11 800 800 HOH HOH . F 3 HOH B 12 801 801 HOH HOH . F 3 HOH B 13 803 803 HOH HOH . F 3 HOH B 14 806 806 HOH HOH . F 3 HOH B 15 811 811 HOH HOH . F 3 HOH B 16 813 813 HOH HOH . F 3 HOH B 17 814 814 HOH HOH . F 3 HOH B 18 815 815 HOH HOH . F 3 HOH B 19 816 816 HOH HOH . F 3 HOH B 20 817 817 HOH HOH . F 3 HOH B 21 818 818 HOH HOH . F 3 HOH B 22 819 819 HOH HOH . F 3 HOH B 23 821 821 HOH HOH . F 3 HOH B 24 823 823 HOH HOH . F 3 HOH B 25 824 824 HOH HOH . F 3 HOH B 26 825 825 HOH HOH . F 3 HOH B 27 826 826 HOH HOH . F 3 HOH B 28 827 827 HOH HOH . F 3 HOH B 29 828 828 HOH HOH . F 3 HOH B 30 829 829 HOH HOH . F 3 HOH B 31 830 830 HOH HOH . F 3 HOH B 32 831 831 HOH HOH . F 3 HOH B 33 832 832 HOH HOH . F 3 HOH B 34 835 835 HOH HOH . F 3 HOH B 35 838 838 HOH HOH . F 3 HOH B 36 839 839 HOH HOH . F 3 HOH B 37 840 840 HOH HOH . F 3 HOH B 38 841 841 HOH HOH . F 3 HOH B 39 842 842 HOH HOH . F 3 HOH B 40 843 843 HOH HOH . F 3 HOH B 41 846 846 HOH HOH . F 3 HOH B 42 848 848 HOH HOH . F 3 HOH B 43 849 849 HOH HOH . F 3 HOH B 44 850 850 HOH HOH . F 3 HOH B 45 851 851 HOH HOH . F 3 HOH B 46 853 853 HOH HOH . F 3 HOH B 47 854 854 HOH HOH . F 3 HOH B 48 855 855 HOH HOH . F 3 HOH B 49 857 857 HOH HOH . F 3 HOH B 50 861 861 HOH HOH . F 3 HOH B 51 863 863 HOH HOH . F 3 HOH B 52 865 865 HOH HOH . F 3 HOH B 53 867 867 HOH HOH . F 3 HOH B 54 868 868 HOH HOH . F 3 HOH B 55 869 869 HOH HOH . F 3 HOH B 56 870 870 HOH HOH . F 3 HOH B 57 871 871 HOH HOH . F 3 HOH B 58 872 872 HOH HOH . F 3 HOH B 59 874 874 HOH HOH . F 3 HOH B 60 875 875 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 65.779 _atom_site.Cartn_y 55.677 _atom_site.Cartn_z 3.479 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 280 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #