data_1DN8 # _model_server_result.job_id GPET7X5kdHeN0w-iWE4dZg _model_server_result.datetime_utc '2025-03-06 11:48:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5}' # _entry.id 1DN8 # _exptl.entry_id 1DN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DN8 _cell.length_a 17.93 _cell.length_b 17.93 _cell.length_c 43.41 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x-y,x,z+5/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 36.175 3 'crystal symmetry operation' 2_555 -y,x-y,z+2/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 28.94 4 'crystal symmetry operation' 4_555 -x,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 0 0 21.705 5 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 14.47 6 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 7.235 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DT-DG MISPAIR' hydrog1 A O2 DT 1 A DT 1 1_555 B N2 DG 2 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog2 A N1 DG 2 A DG 2 1_555 B O2 DT 1 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog3 A O6 DG 2 A DG 2 1_555 B N3 DT 1 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 77 n n CO N2 NCO sing 78 n n CO N3 NCO sing 79 n n CO N4 NCO sing 80 n n CO N5 NCO sing 81 n n CO N6 NCO sing 82 n n N1 HN11 NCO sing 83 n n N1 HN12 NCO sing 84 n n N1 HN13 NCO sing 85 n n N2 HN21 NCO sing 86 n n N2 HN22 NCO sing 87 n n N2 HN23 NCO sing 88 n n N3 HN31 NCO sing 89 n n N3 HN32 NCO sing 90 n n N3 HN33 NCO sing 91 n n N4 HN41 NCO sing 92 n n N4 HN42 NCO sing 93 n n N4 HN43 NCO sing 94 n n N5 HN51 NCO sing 95 n n N5 HN52 NCO sing 96 n n N5 HN53 NCO sing 97 n n N6 HN61 NCO sing 98 n n N6 HN62 NCO sing 99 n n N6 HN63 NCO sing 100 n n # _atom_sites.entry_id 1DN8 _atom_sites.fract_transf_matrix[1][1] 0.055772 _atom_sites.fract_transf_matrix[1][2] 0.0322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NCO _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 5 _pdbx_nonpoly_scheme.auth_seq_num 5 _pdbx_nonpoly_scheme.pdb_mon_id NCO _pdbx_nonpoly_scheme.auth_mon_id NCO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . C 2 3.279 10.463 1.693 0.67 46 ? CO NCO 5 B 1 HETATM 2 N N1 NCO . . . C 2 3.157 12.256 2.531 1 42 ? N1 NCO 5 B 1 HETATM 3 N N2 NCO . . . C 2 5.218 10.764 1.424 0.01 43 ? N2 NCO 5 B 1 HETATM 4 N N3 NCO . . . C 2 3.518 8.609 0.964 1 42 ? N3 NCO 5 B 1 HETATM 5 N N4 NCO . . . C 2 1.381 10.155 2.014 0.29 44 ? N4 NCO 5 B 1 HETATM 6 N N5 NCO . . . C 2 3.693 9.722 3.499 0.01 43 ? N5 NCO 5 B 1 HETATM 7 N N6 NCO . . . C 2 2.907 11.175 -0.056 0.01 43 ? N6 NCO 5 B 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #