data_1DNL
#
_model_server_result.job_id            xXGkSMSRppeOpfo_3A1vLw 
_model_server_result.datetime_utc      '2024-10-10 21:21:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":250}' 
#
_entry.id    1DNL 
#
_exptl.entry_id    1DNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DNL 
_cell.length_a            63.71 
_cell.length_b            63.71 
_cell.length_c            125.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.565 55.174478 41.75 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 33 A ALA 52 1_555 A N MSE 34 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 34 A MSE 53 1_555 A N VAL 35 A VAL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLY 59 A GLY 78 1_555 A N MSE 60 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 60 A MSE 79 1_555 A N VAL 61 A VAL 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C VAL 93 A VAL 112 1_555 A N MSE 94 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 94 A MSE 113 1_555 A N VAL 95 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C VAL 107 A VAL 126 1_555 A N MSE 108 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 A C MSE 108 A MSE 127 1_555 A N LYS 109 A LYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     1DNL 
_atom_sites.fract_transf_matrix[1][1]    0.015696 
_atom_sites.fract_transf_matrix[1][2]    0.009062 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 275 275 PO4 PO4 . 
C 3 FMN A 1 250 250 FMN FMN . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 303 303 HOH HOH . 
D 4 HOH A 5 304 304 HOH HOH . 
D 4 HOH A 6 305 305 HOH HOH . 
D 4 HOH A 7 306 306 HOH HOH . 
D 4 HOH A 8 307 307 HOH HOH . 
D 4 HOH A 9 308 308 HOH HOH . 
D 4 HOH A 10 309 309 HOH HOH . 
D 4 HOH A 11 310 310 HOH HOH . 
D 4 HOH A 12 311 311 HOH HOH . 
D 4 HOH A 13 312 312 HOH HOH . 
D 4 HOH A 14 313 313 HOH HOH . 
D 4 HOH A 15 314 314 HOH HOH . 
D 4 HOH A 16 315 315 HOH HOH . 
D 4 HOH A 17 316 316 HOH HOH . 
D 4 HOH A 18 317 317 HOH HOH . 
D 4 HOH A 19 318 318 HOH HOH . 
D 4 HOH A 20 319 319 HOH HOH . 
D 4 HOH A 21 320 320 HOH HOH . 
D 4 HOH A 22 321 321 HOH HOH . 
D 4 HOH A 23 322 322 HOH HOH . 
D 4 HOH A 24 323 323 HOH HOH . 
D 4 HOH A 25 324 324 HOH HOH . 
D 4 HOH A 26 325 325 HOH HOH . 
D 4 HOH A 27 326 326 HOH HOH . 
D 4 HOH A 28 327 327 HOH HOH . 
D 4 HOH A 29 328 328 HOH HOH . 
D 4 HOH A 30 329 329 HOH HOH . 
D 4 HOH A 31 330 330 HOH HOH . 
D 4 HOH A 32 331 331 HOH HOH . 
D 4 HOH A 33 332 332 HOH HOH . 
D 4 HOH A 34 333 333 HOH HOH . 
D 4 HOH A 35 334 334 HOH HOH . 
D 4 HOH A 36 335 335 HOH HOH . 
D 4 HOH A 37 336 336 HOH HOH . 
D 4 HOH A 38 337 337 HOH HOH . 
D 4 HOH A 39 338 338 HOH HOH . 
D 4 HOH A 40 339 339 HOH HOH . 
D 4 HOH A 41 340 340 HOH HOH . 
D 4 HOH A 42 341 341 HOH HOH . 
D 4 HOH A 43 342 342 HOH HOH . 
D 4 HOH A 44 343 343 HOH HOH . 
D 4 HOH A 45 344 344 HOH HOH . 
D 4 HOH A 46 345 345 HOH HOH . 
D 4 HOH A 47 346 346 HOH HOH . 
D 4 HOH A 48 347 347 HOH HOH . 
D 4 HOH A 49 348 348 HOH HOH . 
D 4 HOH A 50 349 349 HOH HOH . 
D 4 HOH A 51 350 350 HOH HOH . 
D 4 HOH A 52 351 351 HOH HOH . 
D 4 HOH A 53 352 352 HOH HOH . 
D 4 HOH A 54 353 353 HOH HOH . 
D 4 HOH A 55 354 354 HOH HOH . 
D 4 HOH A 56 355 355 HOH HOH . 
D 4 HOH A 57 356 356 HOH HOH . 
D 4 HOH A 58 357 357 HOH HOH . 
D 4 HOH A 59 358 358 HOH HOH . 
D 4 HOH A 60 359 359 HOH HOH . 
D 4 HOH A 61 360 360 HOH HOH . 
D 4 HOH A 62 361 361 HOH HOH . 
D 4 HOH A 63 362 362 HOH HOH . 
D 4 HOH A 64 363 363 HOH HOH . 
D 4 HOH A 65 364 364 HOH HOH . 
D 4 HOH A 66 365 365 HOH HOH . 
D 4 HOH A 67 366 366 HOH HOH . 
D 4 HOH A 68 367 367 HOH HOH . 
D 4 HOH A 69 368 368 HOH HOH . 
D 4 HOH A 70 369 369 HOH HOH . 
D 4 HOH A 71 370 370 HOH HOH . 
D 4 HOH A 72 371 371 HOH HOH . 
D 4 HOH A 73 372 372 HOH HOH . 
D 4 HOH A 74 373 373 HOH HOH . 
D 4 HOH A 75 374 374 HOH HOH . 
D 4 HOH A 76 375 375 HOH HOH . 
D 4 HOH A 77 376 376 HOH HOH . 
D 4 HOH A 78 377 377 HOH HOH . 
D 4 HOH A 79 378 378 HOH HOH . 
D 4 HOH A 80 379 379 HOH HOH . 
D 4 HOH A 81 380 380 HOH HOH . 
D 4 HOH A 82 381 381 HOH HOH . 
D 4 HOH A 83 382 382 HOH HOH . 
D 4 HOH A 84 383 383 HOH HOH . 
D 4 HOH A 85 384 384 HOH HOH . 
D 4 HOH A 86 385 385 HOH HOH . 
D 4 HOH A 87 386 386 HOH HOH . 
D 4 HOH A 88 387 387 HOH HOH . 
D 4 HOH A 89 388 388 HOH HOH . 
D 4 HOH A 90 389 389 HOH HOH . 
D 4 HOH A 91 390 390 HOH HOH . 
D 4 HOH A 92 391 391 HOH HOH . 
D 4 HOH A 93 392 392 HOH HOH . 
D 4 HOH A 94 393 393 HOH HOH . 
D 4 HOH A 95 394 394 HOH HOH . 
D 4 HOH A 96 395 395 HOH HOH . 
D 4 HOH A 97 396 396 HOH HOH . 
D 4 HOH A 98 397 397 HOH HOH . 
D 4 HOH A 99 398 398 HOH HOH . 
D 4 HOH A 100 399 399 HOH HOH . 
D 4 HOH A 101 400 400 HOH HOH . 
D 4 HOH A 102 401 401 HOH HOH . 
D 4 HOH A 103 402 402 HOH HOH . 
D 4 HOH A 104 403 403 HOH HOH . 
D 4 HOH A 105 404 404 HOH HOH . 
D 4 HOH A 106 405 405 HOH HOH . 
D 4 HOH A 107 406 406 HOH HOH . 
D 4 HOH A 108 407 407 HOH HOH . 
D 4 HOH A 109 408 408 HOH HOH . 
D 4 HOH A 110 409 409 HOH HOH . 
D 4 HOH A 111 410 410 HOH HOH . 
D 4 HOH A 112 411 411 HOH HOH . 
D 4 HOH A 113 412 412 HOH HOH . 
D 4 HOH A 114 413 413 HOH HOH . 
D 4 HOH A 115 414 414 HOH HOH . 
D 4 HOH A 116 415 415 HOH HOH . 
D 4 HOH A 117 416 416 HOH HOH . 
D 4 HOH A 118 417 417 HOH HOH . 
D 4 HOH A 119 418 418 HOH HOH . 
D 4 HOH A 120 419 419 HOH HOH . 
D 4 HOH A 121 420 420 HOH HOH . 
D 4 HOH A 122 421 421 HOH HOH . 
D 4 HOH A 123 423 423 HOH HOH . 
D 4 HOH A 124 424 424 HOH HOH . 
D 4 HOH A 125 425 425 HOH HOH . 
D 4 HOH A 126 426 426 HOH HOH . 
D 4 HOH A 127 427 427 HOH HOH . 
D 4 HOH A 128 428 428 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 53.613 20.926 7.408 1 14.84 ? N1 FMN 250 A 1 
HETATM 2 C C2 FMN . . . C 3 54.269 22.003 6.955 1 16.31 ? C2 FMN 250 A 1 
HETATM 3 O O2 FMN . . . C 3 53.737 22.867 6.292 1 15.88 ? O2 FMN 250 A 1 
HETATM 4 N N3 FMN . . . C 3 55.685 22.143 7.236 1 13 ? N3 FMN 250 A 1 
HETATM 5 C C4 FMN . . . C 3 56.422 21.154 7.92 1 15.32 ? C4 FMN 250 A 1 
HETATM 6 O O4 FMN . . . C 3 57.612 21.288 8.154 1 14.44 ? O4 FMN 250 A 1 
HETATM 7 C C4A FMN . . . C 3 55.728 19.971 8.366 1 13.47 ? C4A FMN 250 A 1 
HETATM 8 N N5 FMN . . . C 3 56.367 18.976 9.015 1 14.44 ? N5 FMN 250 A 1 
HETATM 9 C C5A FMN . . . C 3 55.732 17.857 9.563 1 14.17 ? C5A FMN 250 A 1 
HETATM 10 C C6 FMN . . . C 3 56.49 16.888 10.318 1 14.16 ? C6 FMN 250 A 1 
HETATM 11 C C7 FMN . . . C 3 55.836 15.813 10.946 1 15.73 ? C7 FMN 250 A 1 
HETATM 12 C C7M FMN . . . C 3 56.63 14.794 11.771 1 15.45 ? C7M FMN 250 A 1 
HETATM 13 C C8 FMN . . . C 3 54.353 15.672 10.837 1 14.66 ? C8 FMN 250 A 1 
HETATM 14 C C8M FMN . . . C 3 53.537 14.602 11.544 1 15.82 ? C8M FMN 250 A 1 
HETATM 15 C C9 FMN . . . C 3 53.618 16.614 10.062 1 14.78 ? C9 FMN 250 A 1 
HETATM 16 C C9A FMN . . . C 3 54.244 17.716 9.412 1 14.31 ? C9A FMN 250 A 1 
HETATM 17 N N10 FMN . . . C 3 53.599 18.799 8.637 1 13.64 ? N10 FMN 250 A 1 
HETATM 18 C C10 FMN . . . C 3 54.243 19.907 8.112 1 13.7 ? C10 FMN 250 A 1 
HETATM 19 C C1' FMN . . . C 3 52.116 18.702 8.43 1 13.38 ? C1' FMN 250 A 1 
HETATM 20 C C2' FMN . . . C 3 51.397 19.634 9.497 1 13.33 ? C2' FMN 250 A 1 
HETATM 21 O O2' FMN . . . C 3 51.326 18.963 10.767 1 15.33 ? O2' FMN 250 A 1 
HETATM 22 C C3' FMN . . . C 3 49.991 20.045 9.043 1 13.36 ? C3' FMN 250 A 1 
HETATM 23 O O3' FMN . . . C 3 49.278 18.833 8.656 1 12.8 ? O3' FMN 250 A 1 
HETATM 24 C C4' FMN . . . C 3 50.082 20.988 7.805 1 13.25 ? C4' FMN 250 A 1 
HETATM 25 O O4' FMN . . . C 3 51.17 21.927 7.828 1 12.99 ? O4' FMN 250 A 1 
HETATM 26 C C5' FMN . . . C 3 48.817 21.797 7.6 1 13.85 ? C5' FMN 250 A 1 
HETATM 27 O O5' FMN . . . C 3 48.463 22.567 8.927 1 13.74 ? O5' FMN 250 A 1 
HETATM 28 P P FMN . . . C 3 47.463 23.714 8.906 1 13.1 ? P FMN 250 A 1 
HETATM 29 O O1P FMN . . . C 3 47.195 23.981 10.363 1 13.06 ? O1P FMN 250 A 1 
HETATM 30 O O2P FMN . . . C 3 47.998 24.878 8.256 1 14.22 ? O2P FMN 250 A 1 
HETATM 31 O O3P FMN . . . C 3 46.253 23.216 8.135 1 14.04 ? O3P FMN 250 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#