data_1DNL
#
_model_server_result.job_id            QyInb0sRv7zOGYBSOjOtlg 
_model_server_result.datetime_utc      '2024-12-22 07:06:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":275}' 
#
_entry.id    1DNL 
#
_exptl.entry_id    1DNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DNL 
_cell.length_a            63.71 
_cell.length_b            63.71 
_cell.length_c            125.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.565 55.174478 41.75 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 33 A ALA 52 1_555 A N MSE 34 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 34 A MSE 53 1_555 A N VAL 35 A VAL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLY 59 A GLY 78 1_555 A N MSE 60 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 60 A MSE 79 1_555 A N VAL 61 A VAL 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C VAL 93 A VAL 112 1_555 A N MSE 94 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 94 A MSE 113 1_555 A N VAL 95 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C VAL 107 A VAL 126 1_555 A N MSE 108 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 A C MSE 108 A MSE 127 1_555 A N LYS 109 A LYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 333 n n 
P O2 PO4 sing 334 n n 
P O3 PO4 sing 335 n n 
P O4 PO4 sing 336 n n 
#
_atom_sites.entry_id                     1DNL 
_atom_sites.fract_transf_matrix[1][1]    0.015696 
_atom_sites.fract_transf_matrix[1][2]    0.009062 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 275 275 PO4 PO4 . 
C 3 FMN A 1 250 250 FMN FMN . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 303 303 HOH HOH . 
D 4 HOH A 5 304 304 HOH HOH . 
D 4 HOH A 6 305 305 HOH HOH . 
D 4 HOH A 7 306 306 HOH HOH . 
D 4 HOH A 8 307 307 HOH HOH . 
D 4 HOH A 9 308 308 HOH HOH . 
D 4 HOH A 10 309 309 HOH HOH . 
D 4 HOH A 11 310 310 HOH HOH . 
D 4 HOH A 12 311 311 HOH HOH . 
D 4 HOH A 13 312 312 HOH HOH . 
D 4 HOH A 14 313 313 HOH HOH . 
D 4 HOH A 15 314 314 HOH HOH . 
D 4 HOH A 16 315 315 HOH HOH . 
D 4 HOH A 17 316 316 HOH HOH . 
D 4 HOH A 18 317 317 HOH HOH . 
D 4 HOH A 19 318 318 HOH HOH . 
D 4 HOH A 20 319 319 HOH HOH . 
D 4 HOH A 21 320 320 HOH HOH . 
D 4 HOH A 22 321 321 HOH HOH . 
D 4 HOH A 23 322 322 HOH HOH . 
D 4 HOH A 24 323 323 HOH HOH . 
D 4 HOH A 25 324 324 HOH HOH . 
D 4 HOH A 26 325 325 HOH HOH . 
D 4 HOH A 27 326 326 HOH HOH . 
D 4 HOH A 28 327 327 HOH HOH . 
D 4 HOH A 29 328 328 HOH HOH . 
D 4 HOH A 30 329 329 HOH HOH . 
D 4 HOH A 31 330 330 HOH HOH . 
D 4 HOH A 32 331 331 HOH HOH . 
D 4 HOH A 33 332 332 HOH HOH . 
D 4 HOH A 34 333 333 HOH HOH . 
D 4 HOH A 35 334 334 HOH HOH . 
D 4 HOH A 36 335 335 HOH HOH . 
D 4 HOH A 37 336 336 HOH HOH . 
D 4 HOH A 38 337 337 HOH HOH . 
D 4 HOH A 39 338 338 HOH HOH . 
D 4 HOH A 40 339 339 HOH HOH . 
D 4 HOH A 41 340 340 HOH HOH . 
D 4 HOH A 42 341 341 HOH HOH . 
D 4 HOH A 43 342 342 HOH HOH . 
D 4 HOH A 44 343 343 HOH HOH . 
D 4 HOH A 45 344 344 HOH HOH . 
D 4 HOH A 46 345 345 HOH HOH . 
D 4 HOH A 47 346 346 HOH HOH . 
D 4 HOH A 48 347 347 HOH HOH . 
D 4 HOH A 49 348 348 HOH HOH . 
D 4 HOH A 50 349 349 HOH HOH . 
D 4 HOH A 51 350 350 HOH HOH . 
D 4 HOH A 52 351 351 HOH HOH . 
D 4 HOH A 53 352 352 HOH HOH . 
D 4 HOH A 54 353 353 HOH HOH . 
D 4 HOH A 55 354 354 HOH HOH . 
D 4 HOH A 56 355 355 HOH HOH . 
D 4 HOH A 57 356 356 HOH HOH . 
D 4 HOH A 58 357 357 HOH HOH . 
D 4 HOH A 59 358 358 HOH HOH . 
D 4 HOH A 60 359 359 HOH HOH . 
D 4 HOH A 61 360 360 HOH HOH . 
D 4 HOH A 62 361 361 HOH HOH . 
D 4 HOH A 63 362 362 HOH HOH . 
D 4 HOH A 64 363 363 HOH HOH . 
D 4 HOH A 65 364 364 HOH HOH . 
D 4 HOH A 66 365 365 HOH HOH . 
D 4 HOH A 67 366 366 HOH HOH . 
D 4 HOH A 68 367 367 HOH HOH . 
D 4 HOH A 69 368 368 HOH HOH . 
D 4 HOH A 70 369 369 HOH HOH . 
D 4 HOH A 71 370 370 HOH HOH . 
D 4 HOH A 72 371 371 HOH HOH . 
D 4 HOH A 73 372 372 HOH HOH . 
D 4 HOH A 74 373 373 HOH HOH . 
D 4 HOH A 75 374 374 HOH HOH . 
D 4 HOH A 76 375 375 HOH HOH . 
D 4 HOH A 77 376 376 HOH HOH . 
D 4 HOH A 78 377 377 HOH HOH . 
D 4 HOH A 79 378 378 HOH HOH . 
D 4 HOH A 80 379 379 HOH HOH . 
D 4 HOH A 81 380 380 HOH HOH . 
D 4 HOH A 82 381 381 HOH HOH . 
D 4 HOH A 83 382 382 HOH HOH . 
D 4 HOH A 84 383 383 HOH HOH . 
D 4 HOH A 85 384 384 HOH HOH . 
D 4 HOH A 86 385 385 HOH HOH . 
D 4 HOH A 87 386 386 HOH HOH . 
D 4 HOH A 88 387 387 HOH HOH . 
D 4 HOH A 89 388 388 HOH HOH . 
D 4 HOH A 90 389 389 HOH HOH . 
D 4 HOH A 91 390 390 HOH HOH . 
D 4 HOH A 92 391 391 HOH HOH . 
D 4 HOH A 93 392 392 HOH HOH . 
D 4 HOH A 94 393 393 HOH HOH . 
D 4 HOH A 95 394 394 HOH HOH . 
D 4 HOH A 96 395 395 HOH HOH . 
D 4 HOH A 97 396 396 HOH HOH . 
D 4 HOH A 98 397 397 HOH HOH . 
D 4 HOH A 99 398 398 HOH HOH . 
D 4 HOH A 100 399 399 HOH HOH . 
D 4 HOH A 101 400 400 HOH HOH . 
D 4 HOH A 102 401 401 HOH HOH . 
D 4 HOH A 103 402 402 HOH HOH . 
D 4 HOH A 104 403 403 HOH HOH . 
D 4 HOH A 105 404 404 HOH HOH . 
D 4 HOH A 106 405 405 HOH HOH . 
D 4 HOH A 107 406 406 HOH HOH . 
D 4 HOH A 108 407 407 HOH HOH . 
D 4 HOH A 109 408 408 HOH HOH . 
D 4 HOH A 110 409 409 HOH HOH . 
D 4 HOH A 111 410 410 HOH HOH . 
D 4 HOH A 112 411 411 HOH HOH . 
D 4 HOH A 113 412 412 HOH HOH . 
D 4 HOH A 114 413 413 HOH HOH . 
D 4 HOH A 115 414 414 HOH HOH . 
D 4 HOH A 116 415 415 HOH HOH . 
D 4 HOH A 117 416 416 HOH HOH . 
D 4 HOH A 118 417 417 HOH HOH . 
D 4 HOH A 119 418 418 HOH HOH . 
D 4 HOH A 120 419 419 HOH HOH . 
D 4 HOH A 121 420 420 HOH HOH . 
D 4 HOH A 122 421 421 HOH HOH . 
D 4 HOH A 123 423 423 HOH HOH . 
D 4 HOH A 124 424 424 HOH HOH . 
D 4 HOH A 125 425 425 HOH HOH . 
D 4 HOH A 126 426 426 HOH HOH . 
D 4 HOH A 127 427 427 HOH HOH . 
D 4 HOH A 128 428 428 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . B 2 67.879 26.512 42.042 1 13.54 ? P PO4 275 A 1 
HETATM 2 O O1 PO4 . . . B 2 66.701 27.258 41.479 1 13.67 ? O1 PO4 275 A 1 
HETATM 3 O O2 PO4 . . . B 2 67.505 25.819 43.301 1 13.84 ? O2 PO4 275 A 1 
HETATM 4 O O3 PO4 . . . B 2 69.013 27.465 42.253 1 14.34 ? O3 PO4 275 A 1 
HETATM 5 O O4 PO4 . . . B 2 68.289 25.458 41.083 1 12.12 ? O4 PO4 275 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#