data_1DO0 # _model_server_result.job_id n2dhQEk2tY4Ha0oIbKMY6A _model_server_result.datetime_utc '2024-11-22 08:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1do0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":905}' # _entry.id 1DO0 # _exptl.entry_id 1DO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DO0 _cell.length_a 208.15 _cell.length_b 167.7 _cell.length_c 108.19 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H MG MG . B MG 600 1_555 I O1G ATP . B ATP 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc2 L MG MG . E MG 605 1_555 M O1G ATP . E ATP 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1DO0 _atom_sites.fract_transf_matrix[1][1] 0.004804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 900 900 ATP ATP . H 3 MG B 1 600 500 MG MG . I 2 ATP B 1 905 900 ATP ATP . J 4 SO4 C 1 800 800 SO4 SO4 . K 2 ATP D 1 910 900 ATP ATP . L 3 MG E 1 605 500 MG MG . M 2 ATP E 1 915 900 ATP ATP . N 4 SO4 F 1 805 800 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 24.9 47.344 38.009 1 101.79 ? PG ATP 905 B 1 HETATM 2 O O1G ATP . . . I 2 25.06 45.844 37.811 1 98.19 ? O1G ATP 905 B 1 HETATM 3 O O2G ATP . . . I 2 25.392 47.903 39.315 1 102.4 ? O2G ATP 905 B 1 HETATM 4 O O3G ATP . . . I 2 25.403 48.145 36.802 1 99.69 ? O3G ATP 905 B 1 HETATM 5 P PB ATP . . . I 2 22.121 47.097 39.012 1 55.53 ? PB ATP 905 B 1 HETATM 6 O O1B ATP . . . I 2 22.308 47.746 40.335 1 59.59 ? O1B ATP 905 B 1 HETATM 7 O O2B ATP . . . I 2 21.995 45.613 38.93 1 48.48 ? O2B ATP 905 B 1 HETATM 8 O O3B ATP . . . I 2 23.296 47.6 38.035 1 76.47 ? O3B ATP 905 B 1 HETATM 9 P PA ATP . . . I 2 20.424 49.313 38.272 1 65.24 ? PA ATP 905 B 1 HETATM 10 O O1A ATP . . . I 2 19.727 49.746 39.529 1 67.9 ? O1A ATP 905 B 1 HETATM 11 O O2A ATP . . . I 2 21.643 50.063 37.82 1 72.08 ? O2A ATP 905 B 1 HETATM 12 O O3A ATP . . . I 2 20.808 47.762 38.401 1 62.48 ? O3A ATP 905 B 1 HETATM 13 O O5' ATP . . . I 2 19.418 49.291 37.034 1 72.95 ? O5' ATP 905 B 1 HETATM 14 C C5' ATP . . . I 2 18.194 48.552 37.037 1 70.07 ? C5' ATP 905 B 1 HETATM 15 C C4' ATP . . . I 2 17.066 49.373 36.403 1 73.21 ? C4' ATP 905 B 1 HETATM 16 O O4' ATP . . . I 2 15.807 49.016 37.05 1 72.19 ? O4' ATP 905 B 1 HETATM 17 C C3' ATP . . . I 2 17.208 50.894 36.564 1 75.29 ? C3' ATP 905 B 1 HETATM 18 O O3' ATP . . . I 2 16.856 51.575 35.351 1 75.94 ? O3' ATP 905 B 1 HETATM 19 C C2' ATP . . . I 2 16.279 51.244 37.71 1 74.46 ? C2' ATP 905 B 1 HETATM 20 O O2' ATP . . . I 2 15.793 52.578 37.632 1 72.11 ? O2' ATP 905 B 1 HETATM 21 C C1' ATP . . . I 2 15.178 50.173 37.606 1 70.29 ? C1' ATP 905 B 1 HETATM 22 N N9 ATP . . . I 2 14.606 49.78 38.918 1 67.85 ? N9 ATP 905 B 1 HETATM 23 C C8 ATP . . . I 2 13.625 50.43 39.646 1 66.52 ? C8 ATP 905 B 1 HETATM 24 N N7 ATP . . . I 2 13.322 49.842 40.783 1 59.42 ? N7 ATP 905 B 1 HETATM 25 C C5 ATP . . . I 2 14.146 48.738 40.814 1 56.17 ? C5 ATP 905 B 1 HETATM 26 C C6 ATP . . . I 2 14.331 47.683 41.758 1 56.59 ? C6 ATP 905 B 1 HETATM 27 N N6 ATP . . . I 2 13.651 47.59 42.896 1 64 ? N6 ATP 905 B 1 HETATM 28 N N1 ATP . . . I 2 15.259 46.711 41.475 1 53.41 ? N1 ATP 905 B 1 HETATM 29 C C2 ATP . . . I 2 15.96 46.8 40.309 1 55.7 ? C2 ATP 905 B 1 HETATM 30 N N3 ATP . . . I 2 15.879 47.737 39.352 1 54.1 ? N3 ATP 905 B 1 HETATM 31 C C4 ATP . . . I 2 14.947 48.684 39.667 1 60.23 ? C4 ATP 905 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #