data_1DO0
#
_model_server_result.job_id            bt8AABb3u1Vg1lClqKfQSQ 
_model_server_result.datetime_utc      '2024-11-22 08:25:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1do0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":910}' 
#
_entry.id    1DO0 
#
_exptl.entry_id    1DO0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1DO0 
_cell.length_a            208.15 
_cell.length_b            167.7 
_cell.length_c            108.19 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DO0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 H MG MG . B MG 600 1_555 I O1G ATP . B ATP 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc2 L MG MG . E MG 605 1_555 M O1G ATP . E ATP 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1DO0 
_atom_sites.fract_transf_matrix[1][1]    0.004804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009243 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 900 900 ATP ATP . 
H 3 MG B 1 600 500 MG MG . 
I 2 ATP B 1 905 900 ATP ATP . 
J 4 SO4 C 1 800 800 SO4 SO4 . 
K 2 ATP D 1 910 900 ATP ATP . 
L 3 MG E 1 605 500 MG MG . 
M 2 ATP E 1 915 900 ATP ATP . 
N 4 SO4 F 1 805 800 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 2 53.417 47.894 -7.327 1 97.73 ? PG ATP 910 D 1 
HETATM 2 O O1G ATP . . . K 2 53.176 46.404 -7.086 1 103.16 ? O1G ATP 910 D 1 
HETATM 3 O O2G ATP . . . K 2 52.191 48.759 -7.347 1 103.6 ? O2G ATP 910 D 1 
HETATM 4 O O3G ATP . . . K 2 54.509 48.473 -6.425 1 95.52 ? O3G ATP 910 D 1 
HETATM 5 P PB ATP . . . K 2 53.464 47.594 -10.303 1 49.24 ? PB ATP 910 D 1 
HETATM 6 O O1B ATP . . . K 2 52.342 48.502 -10.658 1 53.95 ? O1B ATP 910 D 1 
HETATM 7 O O2B ATP . . . K 2 53.274 46.13 -10.366 1 45.5 ? O2B ATP 910 D 1 
HETATM 8 O O3B ATP . . . K 2 54.027 47.995 -8.845 1 69.53 ? O3B ATP 910 D 1 
HETATM 9 P PA ATP . . . K 2 55.213 49.467 -11.586 1 61.22 ? PA ATP 910 D 1 
HETATM 10 O O1A ATP . . . K 2 54.537 50.026 -12.813 1 56.77 ? O1A ATP 910 D 1 
HETATM 11 O O2A ATP . . . K 2 55.164 50.248 -10.301 1 66.22 ? O2A ATP 910 D 1 
HETATM 12 O O3A ATP . . . K 2 54.637 48.003 -11.283 1 55.3 ? O3A ATP 910 D 1 
HETATM 13 O O5' ATP . . . K 2 56.759 49.181 -11.867 1 64.73 ? O5' ATP 910 D 1 
HETATM 14 C C5' ATP . . . K 2 57.222 48.23 -12.82 1 58.62 ? C5' ATP 910 D 1 
HETATM 15 C C4' ATP . . . K 2 58.543 48.677 -13.408 1 62.13 ? C4' ATP 910 D 1 
HETATM 16 O O4' ATP . . . K 2 58.513 48.426 -14.831 1 61.41 ? O4' ATP 910 D 1 
HETATM 17 C C3' ATP . . . K 2 58.848 50.17 -13.255 1 64.58 ? C3' ATP 910 D 1 
HETATM 18 O O3' ATP . . . K 2 60.226 50.388 -12.946 1 74.71 ? O3' ATP 910 D 1 
HETATM 19 C C2' ATP . . . K 2 58.458 50.757 -14.58 1 67.3 ? C2' ATP 910 D 1 
HETATM 20 O O2' ATP . . . K 2 59.139 51.956 -14.878 1 69.17 ? O2' ATP 910 D 1 
HETATM 21 C C1' ATP . . . K 2 58.763 49.627 -15.554 1 70.55 ? C1' ATP 910 D 1 
HETATM 22 N N9 ATP . . . K 2 57.889 49.648 -16.753 1 70.53 ? N9 ATP 910 D 1 
HETATM 23 C C8 ATP . . . K 2 57.97 50.504 -17.84 1 69.08 ? C8 ATP 910 D 1 
HETATM 24 N N7 ATP . . . K 2 57.051 50.289 -18.754 1 69.8 ? N7 ATP 910 D 1 
HETATM 25 C C5 ATP . . . K 2 56.322 49.236 -18.251 1 60.46 ? C5 ATP 910 D 1 
HETATM 26 C C6 ATP . . . K 2 55.206 48.532 -18.734 1 60.33 ? C6 ATP 910 D 1 
HETATM 27 N N6 ATP . . . K 2 54.615 48.807 -19.887 1 65.99 ? N6 ATP 910 D 1 
HETATM 28 N N1 ATP . . . K 2 54.707 47.509 -17.97 1 53.89 ? N1 ATP 910 D 1 
HETATM 29 C C2 ATP . . . K 2 55.303 47.217 -16.787 1 45.91 ? C2 ATP 910 D 1 
HETATM 30 N N3 ATP . . . K 2 56.354 47.811 -16.232 1 49.82 ? N3 ATP 910 D 1 
HETATM 31 C C4 ATP . . . K 2 56.822 48.821 -17.017 1 61.27 ? C4 ATP 910 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#