data_1DO2 # _model_server_result.job_id Apkq8ZBWi9ALR0sxXw_I4g _model_server_result.datetime_utc '2024-10-12 19:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1do2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 1DO2 # _exptl.entry_id 1DO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DO2 _cell.length_a 201.777 _cell.length_b 201.777 _cell.length_c 171.628 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS hexameric 6 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PQS hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1,2,3 C,D,F 2 1 C,D,F 3 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 201.777 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 100.8885 174.744008 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 100.8885 174.744008 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -100.8885 174.744008 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1DO2 _atom_sites.fract_transf_matrix[1][1] 0.004956 _atom_sites.fract_transf_matrix[1][2] 0.002861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ANP A 1 900 900 ANP ANP . F 2 ANP C 1 905 900 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 132.533 60.57 33.23 1 84.3 ? PG ANP 900 A 1 HETATM 2 O O1G ANP . . . E 2 132.881 59.743 34.434 1 84.29 ? O1G ANP 900 A 1 HETATM 3 O O2G ANP . . . E 2 131.708 59.886 32.19 1 90.04 ? O2G ANP 900 A 1 HETATM 4 O O3G ANP . . . E 2 131.984 61.938 33.578 1 83.12 ? O3G ANP 900 A 1 HETATM 5 P PB ANP . . . E 2 135.052 59.92 31.883 1 25.54 ? PB ANP 900 A 1 HETATM 6 O O1B ANP . . . E 2 134.496 59.23 30.688 1 29.22 ? O1B ANP 900 A 1 HETATM 7 O O2B ANP . . . E 2 135.68 59.124 32.988 1 35.1 ? O2B ANP 900 A 1 HETATM 8 N N3B ANP . . . E 2 133.929 60.877 32.501 1 52.39 ? N3B ANP 900 A 1 HETATM 9 P PA ANP . . . E 2 135.86 62.032 30.204 1 46.88 ? PA ANP 900 A 1 HETATM 10 O O1A ANP . . . E 2 136.861 61.829 29.101 1 52.37 ? O1A ANP 900 A 1 HETATM 11 O O2A ANP . . . E 2 134.389 62.037 29.884 1 42.31 ? O2A ANP 900 A 1 HETATM 12 O O3A ANP . . . E 2 136.105 60.942 31.321 1 38.5 ? O3A ANP 900 A 1 HETATM 13 O O5' ANP . . . E 2 136.163 63.377 30.996 1 52.42 ? O5' ANP 900 A 1 HETATM 14 C C5' ANP . . . E 2 137.477 63.757 31.358 1 44.35 ? C5' ANP 900 A 1 HETATM 15 C C4' ANP . . . E 2 137.852 65.027 30.635 1 45.87 ? C4' ANP 900 A 1 HETATM 16 O O4' ANP . . . E 2 139.099 65.533 31.17 1 42.94 ? O4' ANP 900 A 1 HETATM 17 C C3' ANP . . . E 2 138.057 64.861 29.131 1 53.92 ? C3' ANP 900 A 1 HETATM 18 O O3' ANP . . . E 2 136.917 65.337 28.414 1 66.93 ? O3' ANP 900 A 1 HETATM 19 C C2' ANP . . . E 2 139.321 65.648 28.81 1 54.16 ? C2' ANP 900 A 1 HETATM 20 O O2' ANP . . . E 2 139.081 66.929 28.251 1 66.18 ? O2' ANP 900 A 1 HETATM 21 C C1' ANP . . . E 2 140.062 65.715 30.143 1 50.33 ? C1' ANP 900 A 1 HETATM 22 N N9 ANP . . . E 2 141.133 64.697 30.285 1 40.55 ? N9 ANP 900 A 1 HETATM 23 C C8 ANP . . . E 2 142.248 64.556 29.478 1 42.44 ? C8 ANP 900 A 1 HETATM 24 N N7 ANP . . . E 2 143.042 63.572 29.823 1 40.27 ? N7 ANP 900 A 1 HETATM 25 C C5 ANP . . . E 2 142.423 63.016 30.93 1 30.5 ? C5 ANP 900 A 1 HETATM 26 C C6 ANP . . . E 2 142.755 61.922 31.779 1 21.66 ? C6 ANP 900 A 1 HETATM 27 N N6 ANP . . . E 2 143.844 61.178 31.617 1 11.33 ? N6 ANP 900 A 1 HETATM 28 N N1 ANP . . . E 2 141.909 61.622 32.819 1 16.89 ? N1 ANP 900 A 1 HETATM 29 C C2 ANP . . . E 2 140.795 62.371 32.993 1 21.16 ? C2 ANP 900 A 1 HETATM 30 N N3 ANP . . . E 2 140.379 63.419 32.262 1 21.54 ? N3 ANP 900 A 1 HETATM 31 C C4 ANP . . . E 2 141.241 63.695 31.235 1 33.7 ? C4 ANP 900 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #