data_1DO2
#
_model_server_result.job_id            VbcJ0KBOlE1kIw5B2U-T3Q 
_model_server_result.datetime_utc      '2024-10-12 19:25:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1do2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":905}' 
#
_entry.id    1DO2 
#
_exptl.entry_id    1DO2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DO2 
_cell.length_a            201.777 
_cell.length_b            201.777 
_cell.length_c            171.628 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DO2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS hexameric 6 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PQS hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1,2,3 
C,D,F 2 1 
C,D,F 3 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 201.777 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 100.8885 174.744008 0 
4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 100.8885 174.744008 0 
5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -100.8885 174.744008 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     1DO2 
_atom_sites.fract_transf_matrix[1][1]    0.004956 
_atom_sites.fract_transf_matrix[1][2]    0.002861 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ANP A 1 900 900 ANP ANP . 
F 2 ANP C 1 905 900 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 2 31.631 117.426 53.541 1 85.25 ? PG ANP 905 C 1 
HETATM 2 O O1G ANP . . . F 2 31.834 118.243 52.302 1 79.21 ? O1G ANP 905 C 1 
HETATM 3 O O2G ANP . . . F 2 30.788 118.056 54.601 1 89.25 ? O2G ANP 905 C 1 
HETATM 4 O O3G ANP . . . F 2 31.207 115.999 53.264 1 82.92 ? O3G ANP 905 C 1 
HETATM 5 P PB ANP . . . F 2 34.15 118.372 54.748 1 43.98 ? PB ANP 905 C 1 
HETATM 6 O O1B ANP . . . F 2 33.579 119.062 55.944 1 43.04 ? O1B ANP 905 C 1 
HETATM 7 O O2B ANP . . . F 2 34.654 119.174 53.585 1 45.14 ? O2B ANP 905 C 1 
HETATM 8 N N3B ANP . . . F 2 33.089 117.288 54.213 1 62.67 ? N3B ANP 905 C 1 
HETATM 9 P PA ANP . . . F 2 35.266 116.418 56.492 1 55.07 ? PA ANP 905 C 1 
HETATM 10 O O1A ANP . . . F 2 36.304 116.77 57.522 1 56.04 ? O1A ANP 905 C 1 
HETATM 11 O O2A ANP . . . F 2 33.825 116.284 56.906 1 51.74 ? O2A ANP 905 C 1 
HETATM 12 O O3A ANP . . . F 2 35.332 117.474 55.302 1 47.38 ? O3A ANP 905 C 1 
HETATM 13 O O5' ANP . . . F 2 35.649 115.061 55.751 1 66.2 ? O5' ANP 905 C 1 
HETATM 14 C C5' ANP . . . F 2 36.969 114.782 55.31 1 64.49 ? C5' ANP 905 C 1 
HETATM 15 C C4' ANP . . . F 2 37.521 113.571 56.044 1 64.41 ? C4' ANP 905 C 1 
HETATM 16 O O4' ANP . . . F 2 38.79 113.183 55.443 1 60.53 ? O4' ANP 905 C 1 
HETATM 17 C C3' ANP . . . F 2 37.8 113.798 57.534 1 67.45 ? C3' ANP 905 C 1 
HETATM 18 O O3' ANP . . . F 2 36.757 113.239 58.34 1 73.38 ? O3' ANP 905 C 1 
HETATM 19 C C2' ANP . . . F 2 39.153 113.141 57.791 1 66.89 ? C2' ANP 905 C 1 
HETATM 20 O O2' ANP . . . F 2 39.068 111.848 58.369 1 72.23 ? O2' ANP 905 C 1 
HETATM 21 C C1' ANP . . . F 2 39.828 113.137 56.416 1 62.64 ? C1' ANP 905 C 1 
HETATM 22 N N9 ANP . . . F 2 40.769 114.282 56.201 1 56.03 ? N9 ANP 905 C 1 
HETATM 23 C C8 ANP . . . F 2 41.902 114.569 56.945 1 52.87 ? C8 ANP 905 C 1 
HETATM 24 N N7 ANP . . . F 2 42.556 115.634 56.548 1 45.23 ? N7 ANP 905 C 1 
HETATM 25 C C5 ANP . . . F 2 41.822 116.095 55.468 1 34.3 ? C5 ANP 905 C 1 
HETATM 26 C C6 ANP . . . F 2 41.985 117.204 54.59 1 25.35 ? C6 ANP 905 C 1 
HETATM 27 N N6 ANP . . . F 2 42.986 118.076 54.687 1 17.65 ? N6 ANP 905 C 1 
HETATM 28 N N1 ANP . . . F 2 41.058 117.387 53.594 1 19.95 ? N1 ANP 905 C 1 
HETATM 29 C C2 ANP . . . F 2 40.035 116.51 53.485 1 23.99 ? C2 ANP 905 C 1 
HETATM 30 N N3 ANP . . . F 2 39.779 115.436 54.245 1 31.5 ? N3 ANP 905 C 1 
HETATM 31 C C4 ANP . . . F 2 40.716 115.276 55.23 1 42.27 ? C4 ANP 905 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#