data_1DOU # _model_server_result.job_id wznKcgK-RdjHoG6uK2CK-A _model_server_result.datetime_utc '2024-10-18 16:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dou # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1DOU # _exptl.entry_id 1DOU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DOU _cell.length_a 25.296 _cell.length_b 40.243 _cell.length_c 65.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DOU _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 25 1_555 D O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 C MG MG . A MG 25 1_555 D O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 C MG MG . A MG 25 1_555 D O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 C MG MG . A MG 25 1_555 E O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 C MG MG . A MG 25 1_555 E O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 C MG MG . A MG 25 1_555 E O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DOU _atom_sites.fract_transf_matrix[1][1] 0.039532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 25 25 MG MO6 . D 3 HOH A 1 101 101 HOH H2O . D 3 HOH A 2 102 102 HOH H2O . D 3 HOH A 3 104 104 HOH H2O . D 3 HOH A 4 105 105 HOH H2O . D 3 HOH A 5 108 108 HOH H2O . D 3 HOH A 6 111 111 HOH H2O . D 3 HOH A 7 114 114 HOH H2O . D 3 HOH A 8 115 115 HOH H2O . D 3 HOH A 9 117 117 HOH H2O . D 3 HOH A 10 118 118 HOH H2O . D 3 HOH A 11 120 120 HOH H2O . D 3 HOH A 12 121 121 HOH H2O . D 3 HOH A 13 124 124 HOH H2O . D 3 HOH A 14 127 127 HOH H2O . D 3 HOH A 15 128 128 HOH H2O . D 3 HOH A 16 129 129 HOH H2O . D 3 HOH A 17 132 132 HOH H2O . D 3 HOH A 18 134 134 HOH H2O . D 3 HOH A 19 135 135 HOH H2O . D 3 HOH A 20 139 139 HOH H2O . D 3 HOH A 21 140 140 HOH H2O . D 3 HOH A 22 141 141 HOH H2O . D 3 HOH A 23 142 142 HOH H2O . D 3 HOH A 24 143 143 HOH H2O . D 3 HOH A 25 146 146 HOH H2O . D 3 HOH A 26 147 147 HOH H2O . D 3 HOH A 27 148 148 HOH H2O . D 3 HOH A 28 151 151 HOH H2O . D 3 HOH A 29 152 152 HOH H2O . D 3 HOH A 30 153 153 HOH H2O . D 3 HOH A 31 155 155 HOH H2O . D 3 HOH A 32 156 156 HOH H2O . D 3 HOH A 33 157 157 HOH H2O . D 3 HOH A 34 158 158 HOH H2O . D 3 HOH A 35 159 159 HOH H2O . D 3 HOH A 36 161 161 HOH H2O . D 3 HOH A 37 165 165 HOH H2O . D 3 HOH A 38 166 166 HOH H2O . D 3 HOH A 39 168 168 HOH H2O . D 3 HOH A 40 170 170 HOH H2O . D 3 HOH A 41 174 174 HOH H2O . D 3 HOH A 42 176 176 HOH H2O . D 3 HOH A 43 177 177 HOH H2O . D 3 HOH A 44 179 179 HOH H2O . D 3 HOH A 45 188 188 HOH H2O . D 3 HOH A 46 190 190 HOH H2O . D 3 HOH A 47 191 191 HOH H2O . D 3 HOH A 48 193 193 HOH H2O . D 3 HOH A 49 194 194 HOH H2O . D 3 HOH A 50 197 197 HOH H2O . D 3 HOH A 51 201 201 HOH H2O . D 3 HOH A 52 207 207 HOH H2O . D 3 HOH A 53 212 212 HOH H2O . D 3 HOH A 54 214 214 HOH H2O . D 3 HOH A 55 219 219 HOH H2O . D 3 HOH A 56 220 220 HOH H2O . D 3 HOH A 57 222 222 HOH H2O . D 3 HOH A 58 225 225 HOH H2O . D 3 HOH A 59 231 231 HOH H2O . D 3 HOH A 60 236 236 HOH H2O . D 3 HOH A 61 239 239 HOH H2O . D 3 HOH A 62 246 246 HOH H2O . D 3 HOH A 63 252 252 HOH H2O . D 3 HOH A 64 253 253 HOH H2O . D 3 HOH A 65 254 254 HOH H2O . D 3 HOH A 66 256 256 HOH H2O . D 3 HOH A 67 257 257 HOH H2O . D 3 HOH A 68 266 266 HOH H2O . D 3 HOH A 69 279 279 HOH H2O . D 3 HOH A 70 284 284 HOH H2O . D 3 HOH A 71 291 291 HOH H2O . D 3 HOH A 72 294 294 HOH H2O . D 3 HOH A 73 296 296 HOH H2O . D 3 HOH A 74 297 297 HOH H2O . D 3 HOH A 75 303 25 HOH MO6 . D 3 HOH A 76 304 25 HOH MO6 . D 3 HOH A 77 306 25 HOH MO6 . E 3 HOH B 1 103 103 HOH H2O . E 3 HOH B 2 106 106 HOH H2O . E 3 HOH B 3 107 107 HOH H2O . E 3 HOH B 4 109 109 HOH H2O . E 3 HOH B 5 110 110 HOH H2O . E 3 HOH B 6 112 112 HOH H2O . E 3 HOH B 7 113 113 HOH H2O . E 3 HOH B 8 116 116 HOH H2O . E 3 HOH B 9 119 119 HOH H2O . E 3 HOH B 10 122 122 HOH H2O . E 3 HOH B 11 123 123 HOH H2O . E 3 HOH B 12 125 125 HOH H2O . E 3 HOH B 13 126 126 HOH H2O . E 3 HOH B 14 130 130 HOH H2O . E 3 HOH B 15 131 131 HOH H2O . E 3 HOH B 16 133 133 HOH H2O . E 3 HOH B 17 136 136 HOH H2O . E 3 HOH B 18 138 138 HOH H2O . E 3 HOH B 19 144 144 HOH H2O . E 3 HOH B 20 145 145 HOH H2O . E 3 HOH B 21 149 149 HOH H2O . E 3 HOH B 22 150 150 HOH H2O . E 3 HOH B 23 154 154 HOH H2O . E 3 HOH B 24 160 160 HOH H2O . E 3 HOH B 25 162 162 HOH H2O . E 3 HOH B 26 163 163 HOH H2O . E 3 HOH B 27 164 164 HOH H2O . E 3 HOH B 28 167 167 HOH H2O . E 3 HOH B 29 169 169 HOH H2O . E 3 HOH B 30 172 172 HOH H2O . E 3 HOH B 31 178 178 HOH H2O . E 3 HOH B 32 180 180 HOH H2O . E 3 HOH B 33 181 181 HOH H2O . E 3 HOH B 34 183 183 HOH H2O . E 3 HOH B 35 184 184 HOH H2O . E 3 HOH B 36 185 185 HOH H2O . E 3 HOH B 37 186 186 HOH H2O . E 3 HOH B 38 196 196 HOH H2O . E 3 HOH B 39 198 198 HOH H2O . E 3 HOH B 40 200 200 HOH H2O . E 3 HOH B 41 204 204 HOH H2O . E 3 HOH B 42 205 205 HOH H2O . E 3 HOH B 43 206 206 HOH H2O . E 3 HOH B 44 211 211 HOH H2O . E 3 HOH B 45 213 213 HOH H2O . E 3 HOH B 46 229 229 HOH H2O . E 3 HOH B 47 230 230 HOH H2O . E 3 HOH B 48 243 243 HOH H2O . E 3 HOH B 49 245 245 HOH H2O . E 3 HOH B 50 247 247 HOH H2O . E 3 HOH B 51 248 248 HOH H2O . E 3 HOH B 52 249 249 HOH H2O . E 3 HOH B 53 250 250 HOH H2O . E 3 HOH B 54 251 251 HOH H2O . E 3 HOH B 55 268 268 HOH H2O . E 3 HOH B 56 269 269 HOH H2O . E 3 HOH B 57 270 270 HOH H2O . E 3 HOH B 58 271 271 HOH H2O . E 3 HOH B 59 278 278 HOH H2O . E 3 HOH B 60 281 281 HOH H2O . E 3 HOH B 61 285 285 HOH H2O . E 3 HOH B 62 289 289 HOH H2O . E 3 HOH B 63 292 292 HOH H2O . E 3 HOH B 64 295 295 HOH H2O . E 3 HOH B 65 298 298 HOH H2O . E 3 HOH B 66 299 299 HOH H2O . E 3 HOH B 67 302 302 HOH H2O . E 3 HOH B 68 305 25 HOH MO6 . E 3 HOH B 69 307 25 HOH MO6 . E 3 HOH B 70 308 25 HOH MO6 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.496 _atom_site.Cartn_y 29.482 _atom_site.Cartn_z 19.732 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 25 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #