data_1DP8 # _model_server_result.job_id 7i9Y5ExWFBMCUn8RkbKU7A _model_server_result.datetime_utc '2025-03-01 04:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1DP8 # _exptl.entry_id 1DP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 30.006 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRIC OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DP8 _cell.length_a 127.148 _cell.length_b 127.148 _cell.length_c 58.249 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 200 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 B N NO . A NO 500 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? # _chem_comp.formula 'N O' _chem_comp.formula_weight 30.006 _chem_comp.id NO _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRIC OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nitrogen monoxide' # _chem_comp_bond.atom_id_1 N _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id NO _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 306 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1DP8 _atom_sites.fract_transf_matrix[1][1] 0.007865 _atom_sites.fract_transf_matrix[1][2] 0.00454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO A 1 500 500 NO NO . C 3 HEM A 1 719 719 HEM HEM . D 4 HOH A 1 720 2 HOH TIP . D 4 HOH A 2 721 3 HOH TIP . D 4 HOH A 3 722 5 HOH TIP . D 4 HOH A 4 723 6 HOH TIP . D 4 HOH A 5 724 7 HOH TIP . D 4 HOH A 6 725 8 HOH TIP . D 4 HOH A 7 726 9 HOH TIP . D 4 HOH A 8 727 10 HOH TIP . D 4 HOH A 9 728 11 HOH TIP . D 4 HOH A 10 729 13 HOH TIP . D 4 HOH A 11 730 14 HOH TIP . D 4 HOH A 12 731 15 HOH TIP . D 4 HOH A 13 732 18 HOH TIP . D 4 HOH A 14 733 20 HOH TIP . D 4 HOH A 15 734 21 HOH TIP . D 4 HOH A 16 735 23 HOH TIP . D 4 HOH A 17 736 24 HOH TIP . D 4 HOH A 18 737 25 HOH TIP . D 4 HOH A 19 738 26 HOH TIP . D 4 HOH A 20 739 27 HOH TIP . D 4 HOH A 21 740 28 HOH TIP . D 4 HOH A 22 741 30 HOH TIP . D 4 HOH A 23 742 32 HOH TIP . D 4 HOH A 24 743 33 HOH TIP . D 4 HOH A 25 744 34 HOH TIP . D 4 HOH A 26 745 35 HOH TIP . D 4 HOH A 27 746 39 HOH TIP . D 4 HOH A 28 747 40 HOH TIP . D 4 HOH A 29 748 41 HOH TIP . D 4 HOH A 30 749 42 HOH TIP . D 4 HOH A 31 750 43 HOH TIP . D 4 HOH A 32 751 44 HOH TIP . D 4 HOH A 33 752 53 HOH TIP . D 4 HOH A 34 753 55 HOH TIP . D 4 HOH A 35 754 56 HOH TIP . D 4 HOH A 36 755 59 HOH TIP . D 4 HOH A 37 756 64 HOH TIP . D 4 HOH A 38 757 69 HOH TIP . D 4 HOH A 39 758 70 HOH TIP . D 4 HOH A 40 759 71 HOH TIP . D 4 HOH A 41 760 73 HOH TIP . D 4 HOH A 42 761 74 HOH TIP . D 4 HOH A 43 762 75 HOH TIP . D 4 HOH A 44 763 76 HOH TIP . D 4 HOH A 45 764 78 HOH TIP . D 4 HOH A 46 765 79 HOH TIP . D 4 HOH A 47 766 85 HOH TIP . D 4 HOH A 48 767 86 HOH TIP . D 4 HOH A 49 768 87 HOH TIP . D 4 HOH A 50 769 90 HOH TIP . D 4 HOH A 51 770 91 HOH TIP . D 4 HOH A 52 771 92 HOH TIP . D 4 HOH A 53 772 94 HOH TIP . D 4 HOH A 54 773 99 HOH TIP . D 4 HOH A 55 774 100 HOH TIP . D 4 HOH A 56 775 130 HOH TIP . D 4 HOH A 57 776 132 HOH TIP . D 4 HOH A 58 777 138 HOH TIP . D 4 HOH A 59 778 140 HOH TIP . D 4 HOH A 60 779 141 HOH TIP . D 4 HOH A 61 780 144 HOH TIP . D 4 HOH A 62 781 145 HOH TIP . D 4 HOH A 63 782 146 HOH TIP . D 4 HOH A 64 783 147 HOH TIP . D 4 HOH A 65 784 152 HOH TIP . D 4 HOH A 66 785 160 HOH TIP . D 4 HOH A 67 786 163 HOH TIP . D 4 HOH A 68 787 165 HOH TIP . D 4 HOH A 69 788 171 HOH TIP . D 4 HOH A 70 789 175 HOH TIP . D 4 HOH A 71 790 176 HOH TIP . D 4 HOH A 72 791 181 HOH TIP . D 4 HOH A 73 792 182 HOH TIP . D 4 HOH A 74 793 185 HOH TIP . D 4 HOH A 75 794 187 HOH TIP . D 4 HOH A 76 795 191 HOH TIP . D 4 HOH A 77 796 192 HOH TIP . D 4 HOH A 78 797 194 HOH TIP . D 4 HOH A 79 798 195 HOH TIP . D 4 HOH A 80 799 196 HOH TIP . D 4 HOH A 81 800 199 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO . . . B 2 48.103 54.057 34.507 1 17.7 ? N NO 500 A 1 HETATM 2 O O NO . . . B 2 47.695 53.018 34.727 1 21.4 ? O NO 500 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 2 #