data_1DP9 # _model_server_result.job_id TxE7PgzRm9l1WRNKAl3XGQ _model_server_result.datetime_utc '2025-03-01 04:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1DP9 # _exptl.entry_id 1DP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DP9 _cell.length_a 125.966 _cell.length_b 125.966 _cell.length_c 58.734 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 200 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 B N1 IMD . A IMD 500 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 1DP9 _atom_sites.fract_transf_matrix[1][1] 0.007939 _atom_sites.fract_transf_matrix[1][2] 0.004583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 500 500 IMD IMD . C 3 HEM A 1 719 719 HEM HEM . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 4 4 HOH TIP . D 4 HOH A 5 5 5 HOH TIP . D 4 HOH A 6 6 6 HOH TIP . D 4 HOH A 7 7 7 HOH TIP . D 4 HOH A 8 8 8 HOH TIP . D 4 HOH A 9 9 9 HOH TIP . D 4 HOH A 10 10 10 HOH TIP . D 4 HOH A 11 11 11 HOH TIP . D 4 HOH A 12 12 12 HOH TIP . D 4 HOH A 13 13 13 HOH TIP . D 4 HOH A 14 14 14 HOH TIP . D 4 HOH A 15 15 15 HOH TIP . D 4 HOH A 16 16 16 HOH TIP . D 4 HOH A 17 17 17 HOH TIP . D 4 HOH A 18 18 18 HOH TIP . D 4 HOH A 19 19 19 HOH TIP . D 4 HOH A 20 20 20 HOH TIP . D 4 HOH A 21 21 21 HOH TIP . D 4 HOH A 22 22 22 HOH TIP . D 4 HOH A 23 23 23 HOH TIP . D 4 HOH A 24 24 24 HOH TIP . D 4 HOH A 25 25 25 HOH TIP . D 4 HOH A 26 26 26 HOH TIP . D 4 HOH A 27 27 27 HOH TIP . D 4 HOH A 28 28 28 HOH TIP . D 4 HOH A 29 29 29 HOH TIP . D 4 HOH A 30 30 30 HOH TIP . D 4 HOH A 31 31 31 HOH TIP . D 4 HOH A 32 32 32 HOH TIP . D 4 HOH A 33 33 33 HOH TIP . D 4 HOH A 34 34 34 HOH TIP . D 4 HOH A 35 35 35 HOH TIP . D 4 HOH A 36 36 36 HOH TIP . D 4 HOH A 37 37 37 HOH TIP . D 4 HOH A 38 38 38 HOH TIP . D 4 HOH A 39 39 39 HOH TIP . D 4 HOH A 40 40 40 HOH TIP . D 4 HOH A 41 41 41 HOH TIP . D 4 HOH A 42 42 42 HOH TIP . D 4 HOH A 43 43 43 HOH TIP . D 4 HOH A 44 44 44 HOH TIP . D 4 HOH A 45 45 45 HOH TIP . D 4 HOH A 46 46 46 HOH TIP . D 4 HOH A 47 47 47 HOH TIP . D 4 HOH A 48 50 50 HOH TIP . D 4 HOH A 49 51 51 HOH TIP . D 4 HOH A 50 52 52 HOH TIP . D 4 HOH A 51 53 53 HOH TIP . D 4 HOH A 52 54 54 HOH TIP . D 4 HOH A 53 55 55 HOH TIP . D 4 HOH A 54 56 56 HOH TIP . D 4 HOH A 55 57 57 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . B 2 47.634 53.196 34.362 1 26.8 ? N1 IMD 500 A 1 HETATM 2 C C2 IMD . . . B 2 47.257 52.778 35.618 1 26.69 ? C2 IMD 500 A 1 HETATM 3 N N3 IMD . . . B 2 47.433 51.426 35.682 1 25.85 ? N3 IMD 500 A 1 HETATM 4 C C4 IMD . . . B 2 47.916 50.99 34.483 1 28.8 ? C4 IMD 500 A 1 HETATM 5 C C5 IMD . . . B 2 48.043 52.099 33.653 1 27.12 ? C5 IMD 500 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #