data_1DP9
#
_model_server_result.job_id            hohPO8ch2VUS2ejHoh1MZQ 
_model_server_result.datetime_utc      '2025-03-01 04:37:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":719}' 
#
_entry.id    1DP9 
#
_exptl.entry_id    1DP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1DP9 
_cell.length_a            125.966 
_cell.length_b            125.966 
_cell.length_c            58.734 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 200 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc2 B N1 IMD . A IMD 500 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1DP9 
_atom_sites.fract_transf_matrix[1][1]    0.007939 
_atom_sites.fract_transf_matrix[1][2]    0.004583 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 500 500 IMD IMD . 
C 3 HEM A 1 719 719 HEM HEM . 
D 4 HOH A 1 1 1 HOH TIP . 
D 4 HOH A 2 2 2 HOH TIP . 
D 4 HOH A 3 3 3 HOH TIP . 
D 4 HOH A 4 4 4 HOH TIP . 
D 4 HOH A 5 5 5 HOH TIP . 
D 4 HOH A 6 6 6 HOH TIP . 
D 4 HOH A 7 7 7 HOH TIP . 
D 4 HOH A 8 8 8 HOH TIP . 
D 4 HOH A 9 9 9 HOH TIP . 
D 4 HOH A 10 10 10 HOH TIP . 
D 4 HOH A 11 11 11 HOH TIP . 
D 4 HOH A 12 12 12 HOH TIP . 
D 4 HOH A 13 13 13 HOH TIP . 
D 4 HOH A 14 14 14 HOH TIP . 
D 4 HOH A 15 15 15 HOH TIP . 
D 4 HOH A 16 16 16 HOH TIP . 
D 4 HOH A 17 17 17 HOH TIP . 
D 4 HOH A 18 18 18 HOH TIP . 
D 4 HOH A 19 19 19 HOH TIP . 
D 4 HOH A 20 20 20 HOH TIP . 
D 4 HOH A 21 21 21 HOH TIP . 
D 4 HOH A 22 22 22 HOH TIP . 
D 4 HOH A 23 23 23 HOH TIP . 
D 4 HOH A 24 24 24 HOH TIP . 
D 4 HOH A 25 25 25 HOH TIP . 
D 4 HOH A 26 26 26 HOH TIP . 
D 4 HOH A 27 27 27 HOH TIP . 
D 4 HOH A 28 28 28 HOH TIP . 
D 4 HOH A 29 29 29 HOH TIP . 
D 4 HOH A 30 30 30 HOH TIP . 
D 4 HOH A 31 31 31 HOH TIP . 
D 4 HOH A 32 32 32 HOH TIP . 
D 4 HOH A 33 33 33 HOH TIP . 
D 4 HOH A 34 34 34 HOH TIP . 
D 4 HOH A 35 35 35 HOH TIP . 
D 4 HOH A 36 36 36 HOH TIP . 
D 4 HOH A 37 37 37 HOH TIP . 
D 4 HOH A 38 38 38 HOH TIP . 
D 4 HOH A 39 39 39 HOH TIP . 
D 4 HOH A 40 40 40 HOH TIP . 
D 4 HOH A 41 41 41 HOH TIP . 
D 4 HOH A 42 42 42 HOH TIP . 
D 4 HOH A 43 43 43 HOH TIP . 
D 4 HOH A 44 44 44 HOH TIP . 
D 4 HOH A 45 45 45 HOH TIP . 
D 4 HOH A 46 46 46 HOH TIP . 
D 4 HOH A 47 47 47 HOH TIP . 
D 4 HOH A 48 50 50 HOH TIP . 
D 4 HOH A 49 51 51 HOH TIP . 
D 4 HOH A 50 52 52 HOH TIP . 
D 4 HOH A 51 53 53 HOH TIP . 
D 4 HOH A 52 54 54 HOH TIP . 
D 4 HOH A 53 55 55 HOH TIP . 
D 4 HOH A 54 56 56 HOH TIP . 
D 4 HOH A 55 57 57 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 44.496 54.22 32.777 1 25.3 ? CHA HEM 719 A 1 
HETATM 2 C CHB HEM . . . C 3 48.822 53.949 30.777 1 14.8 ? CHB HEM 719 A 1 
HETATM 3 C CHC HEM . . . C 3 50.676 55.976 34.728 1 9.6 ? CHC HEM 719 A 1 
HETATM 4 C CHD HEM . . . C 3 46.372 56.326 36.759 1 19.57 ? CHD HEM 719 A 1 
HETATM 5 C C1A HEM . . . C 3 45.499 53.92 31.873 1 25.27 ? C1A HEM 719 A 1 
HETATM 6 C C2A HEM . . . C 3 45.352 53.213 30.575 1 25.41 ? C2A HEM 719 A 1 
HETATM 7 C C3A HEM . . . C 3 46.576 53.127 30.048 1 23.36 ? C3A HEM 719 A 1 
HETATM 8 C C4A HEM . . . C 3 47.491 53.784 30.951 1 20.45 ? C4A HEM 719 A 1 
HETATM 9 C CMA HEM . . . C 3 47.009 52.466 28.729 1 19.24 ? CMA HEM 719 A 1 
HETATM 10 C CAA HEM . . . C 3 44.084 52.53 30.078 1 27.52 ? CAA HEM 719 A 1 
HETATM 11 C CBA HEM . . . C 3 44.19 51.023 30.226 1 30.6 ? CBA HEM 719 A 1 
HETATM 12 C CGA HEM . . . C 3 42.907 50.26 29.896 1 30.16 ? CGA HEM 719 A 1 
HETATM 13 O O1A HEM . . . C 3 42.974 49.046 29.758 1 33.62 ? O1A HEM 719 A 1 
HETATM 14 O O2A HEM . . . C 3 41.826 50.948 29.899 1 29.86 ? O2A HEM 719 A 1 
HETATM 15 C C1B HEM . . . C 3 49.697 54.485 31.679 1 10.93 ? C1B HEM 719 A 1 
HETATM 16 C C2B HEM . . . C 3 51.093 54.627 31.432 1 6.92 ? C2B HEM 719 A 1 
HETATM 17 C C3B HEM . . . C 3 51.634 55.199 32.513 1 6.82 ? C3B HEM 719 A 1 
HETATM 18 C C4B HEM . . . C 3 50.553 55.508 33.407 1 10.27 ? C4B HEM 719 A 1 
HETATM 19 C CMB HEM . . . C 3 51.793 54.081 30.199 1 7.99 ? CMB HEM 719 A 1 
HETATM 20 C CAB HEM . . . C 3 53.091 55.439 32.785 1 2.51 ? CAB HEM 719 A 1 
HETATM 21 C CBB HEM . . . C 3 53.442 56.519 33.8 1 9.82 ? CBB HEM 719 A 1 
HETATM 22 C C1C HEM . . . C 3 49.668 56.233 35.596 1 8.72 ? C1C HEM 719 A 1 
HETATM 23 C C2C HEM . . . C 3 49.894 56.764 36.95 1 14.43 ? C2C HEM 719 A 1 
HETATM 24 C C3C HEM . . . C 3 48.757 56.913 37.568 1 13.36 ? C3C HEM 719 A 1 
HETATM 25 C C4C HEM . . . C 3 47.711 56.4 36.616 1 11.08 ? C4C HEM 719 A 1 
HETATM 26 C CMC HEM . . . C 3 51.294 56.971 37.564 1 7.18 ? CMC HEM 719 A 1 
HETATM 27 C CAC HEM . . . C 3 48.658 57.163 39.121 1 15.82 ? CAC HEM 719 A 1 
HETATM 28 C CBC HEM . . . C 3 47.402 57.711 39.744 1 12.96 ? CBC HEM 719 A 1 
HETATM 29 C C1D HEM . . . C 3 45.48 55.914 35.771 1 21.16 ? C1D HEM 719 A 1 
HETATM 30 C C2D HEM . . . C 3 44.055 55.897 35.907 1 20.64 ? C2D HEM 719 A 1 
HETATM 31 C C3D HEM . . . C 3 43.562 55.372 34.758 1 25.72 ? C3D HEM 719 A 1 
HETATM 32 C C4D HEM . . . C 3 44.627 54.997 33.941 1 23.78 ? C4D HEM 719 A 1 
HETATM 33 C CMD HEM . . . C 3 43.289 56.415 37.103 1 18.73 ? CMD HEM 719 A 1 
HETATM 34 C CAD HEM . . . C 3 42.2 54.919 34.498 1 29.23 ? CAD HEM 719 A 1 
HETATM 35 C CBD HEM . . . C 3 42.062 53.479 34.963 1 36.46 ? CBD HEM 719 A 1 
HETATM 36 C CGD HEM . . . C 3 41.001 52.628 34.407 1 39.47 ? CGD HEM 719 A 1 
HETATM 37 O O1D HEM . . . C 3 40.747 51.635 35.041 1 31.92 ? O1D HEM 719 A 1 
HETATM 38 O O2D HEM . . . C 3 40.428 52.99 33.324 1 45.15 ? O2D HEM 719 A 1 
HETATM 39 N NA HEM . . . C 3 46.792 54.23 32.075 1 17.38 ? NA HEM 719 A 1 
HETATM 40 N NB HEM . . . C 3 49.371 55.031 32.904 1 8.44 ? NB HEM 719 A 1 
HETATM 41 N NC HEM . . . C 3 48.348 56.029 35.379 1 9.39 ? NC HEM 719 A 1 
HETATM 42 N ND HEM . . . C 3 45.818 55.357 34.487 1 19.18 ? ND HEM 719 A 1 
HETATM 43 FE FE HEM . . . C 3 47.552 55.156 33.685 1 18.31 ? FE HEM 719 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#