data_1DPP # _model_server_result.job_id Jaq2AHmz4u4WbI4ZukE8NA _model_server_result.datetime_utc '2024-11-22 19:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 1DPP # _exptl.entry_id 1DPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1DPP _cell.length_a 182.57 _cell.length_b 182.57 _cell.length_c 211.88 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 234 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 422 A CYS 422 1_555 A SG CYS 435 A CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 6 C CYS 6 1_555 B SG CYS 234 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 B SG CYS 422 C CYS 422 1_555 B SG CYS 435 C CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 C SG CYS 6 E CYS 6 1_555 C SG CYS 234 E CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 C SG CYS 422 E CYS 422 1_555 C SG CYS 435 E CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 D SG CYS 6 G CYS 6 1_555 D SG CYS 234 G CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 D SG CYS 422 G CYS 422 1_555 D SG CYS 435 G CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 E C GLY . A GLY 1001 1_555 F N LEU . A LEU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 G C GLY . C GLY 1001 1_555 H N LEU . C LEU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 I C GLY . E GLY 1001 1_555 J N LEU . E LEU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 K C GLY . G GLY 1001 1_555 L N LEU . G LEU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 171 n n N H LEU sing 172 n n N H2 LEU sing 173 n n CA C LEU sing 174 n n CA CB LEU sing 175 n n CA HA LEU sing 176 n n C O LEU doub 177 n n C OXT LEU sing 178 n n CB CG LEU sing 179 n n CB HB2 LEU sing 180 n n CB HB3 LEU sing 181 n n CG CD1 LEU sing 182 n n CG CD2 LEU sing 183 n n CG HG LEU sing 184 n n CD1 HD11 LEU sing 185 n n CD1 HD12 LEU sing 186 n n CD1 HD13 LEU sing 187 n n CD2 HD21 LEU sing 188 n n CD2 HD22 LEU sing 189 n n CD2 HD23 LEU sing 190 n n OXT HXT LEU sing 191 n n # _atom_sites.entry_id 1DPP _atom_sites.fract_transf_matrix[1][1] 0.005477 _atom_sites.fract_transf_matrix[1][2] 0.003162 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GLY A 1 1001 1001 GLY GLY . F 3 LEU A 1 1002 1002 LEU LEU . G 2 GLY C 1 1001 1001 GLY GLY . H 3 LEU C 1 1002 1002 LEU LEU . I 2 GLY E 1 1001 1001 GLY GLY . J 3 LEU E 1 1002 1002 LEU LEU . K 2 GLY G 1 1001 1001 GLY GLY . L 3 LEU G 1 1002 1002 LEU LEU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . H 3 4.235 156.476 25.818 1 2 ? N LEU 1002 C 1 HETATM 2 C CA LEU . . . H 3 5.186 155.644 26.549 1 2 ? CA LEU 1002 C 1 HETATM 3 C C LEU . . . H 3 5.919 154.78 25.545 1 2 ? C LEU 1002 C 1 HETATM 4 O O LEU . . . H 3 5.412 154.667 24.414 1 26.21 ? O LEU 1002 C 1 HETATM 5 C CB LEU . . . H 3 4.445 154.722 27.503 1 2 ? CB LEU 1002 C 1 HETATM 6 C CG LEU . . . H 3 3.945 155.345 28.797 1 26.21 ? CG LEU 1002 C 1 HETATM 7 C CD1 LEU . . . H 3 2.886 154.455 29.415 1 26.21 ? CD1 LEU 1002 C 1 HETATM 8 C CD2 LEU . . . H 3 5.11 155.546 29.751 1 26.21 ? CD2 LEU 1002 C 1 HETATM 9 O OXT LEU . . . H 3 6.944 154.175 25.901 1 26.21 ? OXT LEU 1002 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #