data_1DPW # _model_server_result.job_id k_eDrly_Jc-Jyc4rtJei7A _model_server_result.datetime_utc '2024-11-07 16:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":400}' # _entry.id 1DPW # _exptl.entry_id 1DPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DPW _cell.length_a 77.51 _cell.length_b 77.51 _cell.length_c 37.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DPW _atom_sites.fract_transf_matrix[1][1] 0.0129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 300 1 CL IUM . C 2 CL A 1 301 2 CL IUM . D 3 TRS A 1 500 3 TRS TRS . E 3 TRS A 1 501 4 TRS TRS . F 4 MRD A 1 400 1 MRD MPD . G 5 HOH A 1 502 1 HOH WAT . G 5 HOH A 2 503 2 HOH WAT . G 5 HOH A 3 504 3 HOH WAT . G 5 HOH A 4 505 4 HOH WAT . G 5 HOH A 5 506 5 HOH WAT . G 5 HOH A 6 507 6 HOH WAT . G 5 HOH A 7 508 7 HOH WAT . G 5 HOH A 8 509 8 HOH WAT . G 5 HOH A 9 510 9 HOH WAT . G 5 HOH A 10 511 10 HOH WAT . G 5 HOH A 11 512 11 HOH WAT . G 5 HOH A 12 513 12 HOH WAT . G 5 HOH A 13 514 13 HOH WAT . G 5 HOH A 14 515 14 HOH WAT . G 5 HOH A 15 516 15 HOH WAT . G 5 HOH A 16 517 16 HOH WAT . G 5 HOH A 17 518 17 HOH WAT . G 5 HOH A 18 519 19 HOH WAT . G 5 HOH A 19 520 20 HOH WAT . G 5 HOH A 20 521 21 HOH WAT . G 5 HOH A 21 522 23 HOH WAT . G 5 HOH A 22 523 24 HOH WAT . G 5 HOH A 23 524 25 HOH WAT . G 5 HOH A 24 525 26 HOH WAT . G 5 HOH A 25 526 27 HOH WAT . G 5 HOH A 26 527 28 HOH WAT . G 5 HOH A 27 528 29 HOH WAT . G 5 HOH A 28 529 30 HOH WAT . G 5 HOH A 29 530 31 HOH WAT . G 5 HOH A 30 531 32 HOH WAT . G 5 HOH A 31 532 33 HOH WAT . G 5 HOH A 32 533 35 HOH WAT . G 5 HOH A 33 534 36 HOH WAT . G 5 HOH A 34 535 38 HOH WAT . G 5 HOH A 35 536 39 HOH WAT . G 5 HOH A 36 537 40 HOH WAT . G 5 HOH A 37 538 41 HOH WAT . G 5 HOH A 38 539 42 HOH WAT . G 5 HOH A 39 540 43 HOH WAT . G 5 HOH A 40 541 44 HOH WAT . G 5 HOH A 41 542 45 HOH WAT . G 5 HOH A 42 543 46 HOH WAT . G 5 HOH A 43 544 47 HOH WAT . G 5 HOH A 44 545 48 HOH WAT . G 5 HOH A 45 546 52 HOH WAT . G 5 HOH A 46 547 53 HOH WAT . G 5 HOH A 47 548 54 HOH WAT . G 5 HOH A 48 549 55 HOH WAT . G 5 HOH A 49 550 56 HOH WAT . G 5 HOH A 50 551 57 HOH WAT . G 5 HOH A 51 552 60 HOH WAT . G 5 HOH A 52 553 62 HOH WAT . G 5 HOH A 53 554 64 HOH WAT . G 5 HOH A 54 555 65 HOH WAT . G 5 HOH A 55 556 66 HOH WAT . G 5 HOH A 56 557 67 HOH WAT . G 5 HOH A 57 558 69 HOH WAT . G 5 HOH A 58 559 70 HOH WAT . G 5 HOH A 59 560 72 HOH WAT . G 5 HOH A 60 561 74 HOH WAT . G 5 HOH A 61 562 78 HOH WAT . G 5 HOH A 62 563 83 HOH WAT . G 5 HOH A 63 564 85 HOH WAT . G 5 HOH A 64 565 86 HOH WAT . G 5 HOH A 65 566 87 HOH WAT . G 5 HOH A 66 567 88 HOH WAT . G 5 HOH A 67 568 89 HOH WAT . G 5 HOH A 68 569 90 HOH WAT . G 5 HOH A 69 570 92 HOH WAT . G 5 HOH A 70 571 95 HOH WAT . G 5 HOH A 71 572 97 HOH WAT . G 5 HOH A 72 573 100 HOH WAT . G 5 HOH A 73 574 101 HOH WAT . G 5 HOH A 74 575 103 HOH WAT . G 5 HOH A 75 576 105 HOH WAT . G 5 HOH A 76 577 106 HOH WAT . G 5 HOH A 77 578 113 HOH WAT . G 5 HOH A 78 579 116 HOH WAT . G 5 HOH A 79 580 118 HOH WAT . G 5 HOH A 80 581 125 HOH WAT . G 5 HOH A 81 582 126 HOH WAT . G 5 HOH A 82 583 129 HOH WAT . G 5 HOH A 83 584 131 HOH WAT . G 5 HOH A 84 585 132 HOH WAT . G 5 HOH A 85 586 133 HOH WAT . G 5 HOH A 86 587 135 HOH WAT . G 5 HOH A 87 588 137 HOH WAT . G 5 HOH A 88 589 149 HOH WAT . G 5 HOH A 89 590 150 HOH WAT . G 5 HOH A 90 591 153 HOH WAT . G 5 HOH A 91 592 154 HOH WAT . G 5 HOH A 92 593 155 HOH WAT . G 5 HOH A 93 594 160 HOH WAT . G 5 HOH A 94 595 163 HOH WAT . G 5 HOH A 95 596 165 HOH WAT . G 5 HOH A 96 597 167 HOH WAT . G 5 HOH A 97 598 176 HOH WAT . G 5 HOH A 98 599 177 HOH WAT . G 5 HOH A 99 600 178 HOH WAT . G 5 HOH A 100 601 179 HOH WAT . G 5 HOH A 101 602 180 HOH WAT . G 5 HOH A 102 603 181 HOH WAT . G 5 HOH A 103 604 182 HOH WAT . G 5 HOH A 104 605 183 HOH WAT . G 5 HOH A 105 606 184 HOH WAT . G 5 HOH A 106 607 185 HOH WAT . G 5 HOH A 107 608 186 HOH WAT . G 5 HOH A 108 609 187 HOH WAT . G 5 HOH A 109 610 188 HOH WAT . G 5 HOH A 110 611 189 HOH WAT . G 5 HOH A 111 612 190 HOH WAT . G 5 HOH A 112 613 191 HOH WAT . G 5 HOH A 113 614 192 HOH WAT . G 5 HOH A 114 615 193 HOH WAT . G 5 HOH A 115 616 194 HOH WAT . G 5 HOH A 116 617 195 HOH WAT . G 5 HOH A 117 618 196 HOH WAT . G 5 HOH A 118 619 197 HOH WAT . G 5 HOH A 119 620 198 HOH WAT . G 5 HOH A 120 621 199 HOH WAT . G 5 HOH A 121 622 200 HOH WAT . G 5 HOH A 122 623 201 HOH WAT . G 5 HOH A 123 624 202 HOH WAT . G 5 HOH A 124 625 203 HOH WAT . G 5 HOH A 125 626 204 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . F 4 7.649 21.081 11.253 1 21.48 ? C1 MRD 400 A 1 HETATM 2 C C2 MRD . . . F 4 8.005 22.425 10.64 1 21.71 ? C2 MRD 400 A 1 HETATM 3 O O2 MRD . . . F 4 7.967 23.314 11.854 1 21.82 ? O2 MRD 400 A 1 HETATM 4 C CM MRD . . . F 4 9.391 22.786 10.149 1 21.16 ? CM MRD 400 A 1 HETATM 5 C C3 MRD . . . F 4 6.89 22.853 9.684 1 21.16 ? C3 MRD 400 A 1 HETATM 6 C C4 MRD . . . F 4 6.976 24.142 9.027 1 20.69 ? C4 MRD 400 A 1 HETATM 7 O O4 MRD . . . F 4 6.88 25.097 10.078 1 20.32 ? O4 MRD 400 A 1 HETATM 8 C C5 MRD . . . F 4 5.706 24.275 8.127 1 20.45 ? C5 MRD 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #