data_1DPY # _model_server_result.job_id dtKYSs4FuopuK28dSCgoFQ _model_server_result.datetime_utc '2025-02-05 08:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":150}' # _entry.id 1DPY # _exptl.entry_id 1DPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.02 _cell.angle_beta 92.02 _cell.angle_gamma 92.02 _cell.entry_id 1DPY _cell.length_a 57.98 _cell.length_b 57.98 _cell.length_c 57.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DPY _symmetry.cell_setting rhombohedral _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'R 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 70 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 A CYS 27 1_555 A SG CYS 117 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 27 A CYS 29 1_555 A SG CYS 43 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 42 A CYS 44 1_555 A SG CYS 98 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 49 A CYS 51 1_555 A SG CYS 91 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 59 A CYS 61 1_555 A SG CYS 84 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 77 A CYS 79 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A O TYR 26 A TYR 28 1_555 B NA NA . A NA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc2 A O GLY 28 A GLY 30 1_555 B NA NA . A NA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A O GLY 30 A GLY 32 1_555 B NA NA . A NA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A OD1 ASP 47 A ASP 49 1_555 B NA NA . A NA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc5 A OD2 ASP 47 A ASP 49 1_555 B NA NA . A NA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DPY _atom_sites.fract_transf_matrix[1][1] 0.017247 _atom_sites.fract_transf_matrix[1][2] 0.000608 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017258 _atom_sites.fract_transf_matrix[2][3] 0.000631 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 150 150 NA NA . C 3 HOH A 1 201 201 HOH WAT . C 3 HOH A 2 202 202 HOH WAT . C 3 HOH A 3 203 203 HOH WAT . C 3 HOH A 4 204 204 HOH WAT . C 3 HOH A 5 205 205 HOH WAT . C 3 HOH A 6 206 206 HOH WAT . C 3 HOH A 7 207 207 HOH WAT . C 3 HOH A 8 208 208 HOH WAT . C 3 HOH A 9 209 209 HOH WAT . C 3 HOH A 10 210 210 HOH WAT . C 3 HOH A 11 211 211 HOH WAT . C 3 HOH A 12 212 212 HOH WAT . C 3 HOH A 13 213 213 HOH WAT . C 3 HOH A 14 214 214 HOH WAT . C 3 HOH A 15 215 215 HOH WAT . C 3 HOH A 16 216 216 HOH WAT . C 3 HOH A 17 217 217 HOH WAT . C 3 HOH A 18 218 218 HOH WAT . C 3 HOH A 19 219 219 HOH WAT . C 3 HOH A 20 220 220 HOH WAT . C 3 HOH A 21 221 221 HOH WAT . C 3 HOH A 22 222 222 HOH WAT . C 3 HOH A 23 223 223 HOH WAT . C 3 HOH A 24 224 224 HOH WAT . C 3 HOH A 25 225 225 HOH WAT . C 3 HOH A 26 226 226 HOH WAT . C 3 HOH A 27 227 227 HOH WAT . C 3 HOH A 28 228 228 HOH WAT . C 3 HOH A 29 229 229 HOH WAT . C 3 HOH A 30 230 230 HOH WAT . C 3 HOH A 31 231 231 HOH WAT . C 3 HOH A 32 232 232 HOH WAT . C 3 HOH A 33 233 233 HOH WAT . C 3 HOH A 34 234 234 HOH WAT . C 3 HOH A 35 235 235 HOH WAT . C 3 HOH A 36 236 236 HOH WAT . C 3 HOH A 37 237 237 HOH WAT . C 3 HOH A 38 238 238 HOH WAT . C 3 HOH A 39 239 239 HOH WAT . C 3 HOH A 40 240 240 HOH WAT . C 3 HOH A 41 241 241 HOH WAT . C 3 HOH A 42 242 242 HOH WAT . C 3 HOH A 43 243 243 HOH WAT . C 3 HOH A 44 244 244 HOH WAT . C 3 HOH A 45 245 245 HOH WAT . C 3 HOH A 46 246 246 HOH WAT . C 3 HOH A 47 247 247 HOH WAT . C 3 HOH A 48 248 248 HOH WAT . C 3 HOH A 49 250 250 HOH WAT . C 3 HOH A 50 251 251 HOH WAT . C 3 HOH A 51 252 252 HOH WAT . C 3 HOH A 52 253 253 HOH WAT . C 3 HOH A 53 254 254 HOH WAT . C 3 HOH A 54 255 255 HOH WAT . C 3 HOH A 55 256 256 HOH WAT . C 3 HOH A 56 257 257 HOH WAT . C 3 HOH A 57 258 258 HOH WAT . C 3 HOH A 58 259 259 HOH WAT . C 3 HOH A 59 260 260 HOH WAT . C 3 HOH A 60 262 262 HOH WAT . C 3 HOH A 61 263 263 HOH WAT . C 3 HOH A 62 264 264 HOH WAT . C 3 HOH A 63 265 265 HOH WAT . C 3 HOH A 64 266 266 HOH WAT . C 3 HOH A 65 267 267 HOH WAT . C 3 HOH A 66 268 268 HOH WAT . C 3 HOH A 67 269 269 HOH WAT . C 3 HOH A 68 270 270 HOH WAT . C 3 HOH A 69 271 271 HOH WAT . C 3 HOH A 70 272 272 HOH WAT . C 3 HOH A 71 273 273 HOH WAT . C 3 HOH A 72 274 274 HOH WAT . C 3 HOH A 73 275 275 HOH WAT . C 3 HOH A 74 278 278 HOH WAT . C 3 HOH A 75 280 280 HOH WAT . C 3 HOH A 76 281 281 HOH WAT . C 3 HOH A 77 282 282 HOH WAT . C 3 HOH A 78 283 283 HOH WAT . C 3 HOH A 79 284 284 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 56.399 _atom_site.Cartn_y 34.693 _atom_site.Cartn_z 30.282 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 150 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #