data_1DQ6 # _model_server_result.job_id 43yU8Bo2vWOaBEORx7Ycew _model_server_result.datetime_utc '2025-06-29 04:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1DQ6 # _exptl.entry_id 1DQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DQ6 _cell.length_a 63.2 _cell.length_b 87.41 _cell.length_c 89.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -87.41 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 89.3 4 'crystal symmetry operation' 4_546 x,-y-1,-z+1 1 0 0 0 -1 0 0 0 -1 0 -87.41 89.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc4 A OD1 ASP 10 A ASP 10 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 B MN MN . A MN 301 1_555 D O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc11 B MN MN . A MN 301 1_555 D O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc12 C MN MN . A MN 302 1_555 D O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc13 C MN MN . A MN 302 1_555 D O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1DQ6 _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 2 MN A 1 302 2 MN MN . D 3 HOH A 1 303 1 HOH WAT . D 3 HOH A 2 304 2 HOH WAT . D 3 HOH A 3 305 3 HOH WAT . D 3 HOH A 4 306 4 HOH WAT . D 3 HOH A 5 307 5 HOH WAT . D 3 HOH A 6 308 6 HOH WAT . D 3 HOH A 7 309 7 HOH WAT . D 3 HOH A 8 310 8 HOH WAT . D 3 HOH A 9 311 9 HOH WAT . D 3 HOH A 10 312 10 HOH WAT . D 3 HOH A 11 313 11 HOH WAT . D 3 HOH A 12 314 12 HOH WAT . D 3 HOH A 13 315 13 HOH WAT . D 3 HOH A 14 316 14 HOH WAT . D 3 HOH A 15 317 15 HOH WAT . D 3 HOH A 16 318 16 HOH WAT . D 3 HOH A 17 319 17 HOH WAT . D 3 HOH A 18 320 18 HOH WAT . D 3 HOH A 19 321 19 HOH WAT . D 3 HOH A 20 322 20 HOH WAT . D 3 HOH A 21 323 21 HOH WAT . D 3 HOH A 22 324 22 HOH WAT . D 3 HOH A 23 325 23 HOH WAT . D 3 HOH A 24 326 24 HOH WAT . D 3 HOH A 25 327 25 HOH WAT . D 3 HOH A 26 328 26 HOH WAT . D 3 HOH A 27 329 27 HOH WAT . D 3 HOH A 28 330 28 HOH WAT . D 3 HOH A 29 331 29 HOH WAT . D 3 HOH A 30 332 30 HOH WAT . D 3 HOH A 31 333 31 HOH WAT . D 3 HOH A 32 334 32 HOH WAT . D 3 HOH A 33 335 33 HOH WAT . D 3 HOH A 34 336 34 HOH WAT . D 3 HOH A 35 337 35 HOH WAT . D 3 HOH A 36 338 36 HOH WAT . D 3 HOH A 37 339 37 HOH WAT . D 3 HOH A 38 340 38 HOH WAT . D 3 HOH A 39 341 39 HOH WAT . D 3 HOH A 40 342 40 HOH WAT . D 3 HOH A 41 343 41 HOH WAT . D 3 HOH A 42 344 42 HOH WAT . D 3 HOH A 43 345 43 HOH WAT . D 3 HOH A 44 346 44 HOH WAT . D 3 HOH A 45 347 45 HOH WAT . D 3 HOH A 46 348 46 HOH WAT . D 3 HOH A 47 349 47 HOH WAT . D 3 HOH A 48 350 48 HOH WAT . D 3 HOH A 49 351 49 HOH WAT . D 3 HOH A 50 352 50 HOH WAT . D 3 HOH A 51 353 51 HOH WAT . D 3 HOH A 52 354 52 HOH WAT . D 3 HOH A 53 355 53 HOH WAT . D 3 HOH A 54 356 54 HOH WAT . D 3 HOH A 55 357 55 HOH WAT . D 3 HOH A 56 358 56 HOH WAT . D 3 HOH A 57 359 57 HOH WAT . D 3 HOH A 58 360 58 HOH WAT . D 3 HOH A 59 361 59 HOH WAT . D 3 HOH A 60 362 60 HOH WAT . D 3 HOH A 61 363 61 HOH WAT . D 3 HOH A 62 364 62 HOH WAT . D 3 HOH A 63 365 63 HOH WAT . D 3 HOH A 64 366 64 HOH WAT . D 3 HOH A 65 367 65 HOH WAT . D 3 HOH A 66 368 66 HOH WAT . D 3 HOH A 67 369 67 HOH WAT . D 3 HOH A 68 370 68 HOH WAT . D 3 HOH A 69 371 69 HOH WAT . D 3 HOH A 70 372 70 HOH WAT . D 3 HOH A 71 373 71 HOH WAT . D 3 HOH A 72 374 72 HOH WAT . D 3 HOH A 73 375 73 HOH WAT . D 3 HOH A 74 376 74 HOH WAT . D 3 HOH A 75 377 75 HOH WAT . D 3 HOH A 76 378 76 HOH WAT . D 3 HOH A 77 379 77 HOH WAT . D 3 HOH A 78 380 78 HOH WAT . D 3 HOH A 79 381 79 HOH WAT . D 3 HOH A 80 382 80 HOH WAT . D 3 HOH A 81 383 81 HOH WAT . D 3 HOH A 82 384 82 HOH WAT . D 3 HOH A 83 385 83 HOH WAT . D 3 HOH A 84 386 84 HOH WAT . D 3 HOH A 85 387 85 HOH WAT . D 3 HOH A 86 388 86 HOH WAT . D 3 HOH A 87 389 87 HOH WAT . D 3 HOH A 88 390 88 HOH WAT . D 3 HOH A 89 391 89 HOH WAT . D 3 HOH A 90 392 90 HOH WAT . D 3 HOH A 91 393 91 HOH WAT . D 3 HOH A 92 394 92 HOH WAT . D 3 HOH A 93 395 93 HOH WAT . D 3 HOH A 94 396 94 HOH WAT . D 3 HOH A 95 397 95 HOH WAT . D 3 HOH A 96 398 96 HOH WAT . D 3 HOH A 97 399 97 HOH WAT . D 3 HOH A 98 400 98 HOH WAT . D 3 HOH A 99 401 99 HOH WAT . D 3 HOH A 100 402 100 HOH WAT . D 3 HOH A 101 403 101 HOH WAT . D 3 HOH A 102 404 102 HOH WAT . D 3 HOH A 103 405 103 HOH WAT . D 3 HOH A 104 406 104 HOH WAT . D 3 HOH A 105 407 105 HOH WAT . D 3 HOH A 106 408 106 HOH WAT . D 3 HOH A 107 409 107 HOH WAT . D 3 HOH A 108 410 108 HOH WAT . D 3 HOH A 109 411 109 HOH WAT . D 3 HOH A 110 412 110 HOH WAT . D 3 HOH A 111 413 111 HOH WAT . D 3 HOH A 112 414 112 HOH WAT . D 3 HOH A 113 415 113 HOH WAT . D 3 HOH A 114 416 114 HOH WAT . D 3 HOH A 115 417 115 HOH WAT . D 3 HOH A 116 418 116 HOH WAT . D 3 HOH A 117 419 117 HOH WAT . D 3 HOH A 118 420 118 HOH WAT . D 3 HOH A 119 421 119 HOH WAT . D 3 HOH A 120 422 120 HOH WAT . D 3 HOH A 121 423 121 HOH WAT . D 3 HOH A 122 424 122 HOH WAT . D 3 HOH A 123 425 123 HOH WAT . D 3 HOH A 124 426 124 HOH WAT . D 3 HOH A 125 427 125 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.252 _atom_site.Cartn_y -18.581 _atom_site.Cartn_z 61.894 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #