data_1DQ8 # _model_server_result.job_id VvjY4uY-HeLgz3hPh26CDA _model_server_result.datetime_utc '2024-10-24 04:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 1DQ8 # _exptl.entry_id 1DQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.48 _cell.angle_gamma 90 _cell.entry_id 1DQ8 _cell.length_a 75.297 _cell.length_b 130.182 _cell.length_c 92.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 169 n n S1 HS1 DTT sing 170 n n C1 C2 DTT sing 171 n n C1 H11 DTT sing 172 n n C1 H12 DTT sing 173 n n C2 O2 DTT sing 174 n n C2 C3 DTT sing 175 n n C2 H2 DTT sing 176 n n O2 HO2 DTT sing 177 n n C3 O3 DTT sing 178 n n C3 C4 DTT sing 179 n n C3 H3 DTT sing 180 n n O3 HO3 DTT sing 181 n n C4 S4 DTT sing 182 n n C4 H41 DTT sing 183 n n C4 H42 DTT sing 184 n n S4 HS2 DTT sing 185 n n # _atom_sites.entry_id 1DQ8 _atom_sites.fract_transf_matrix[1][1] 0.013281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003929 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 100 100 COA COA . F 3 MAH A 1 200 200 MAH MAH . G 2 COA B 1 101 101 COA COA . H 3 MAH B 1 201 201 MAH MAH . I 4 DTT B 1 302 302 DTT DTT . J 2 COA C 1 102 102 COA COA . K 4 DTT C 1 301 301 DTT DTT . L 2 COA D 1 103 103 COA COA . M 3 MAH D 1 202 202 MAH MAH . N 3 MAH D 1 203 203 MAH MAH . O 5 HOH A 1 2002 2002 HOH HOH . O 5 HOH A 2 2005 2005 HOH HOH . O 5 HOH A 3 2008 2008 HOH HOH . O 5 HOH A 4 2019 2019 HOH HOH . O 5 HOH A 5 2021 2021 HOH HOH . O 5 HOH A 6 2022 2022 HOH HOH . O 5 HOH A 7 2023 2023 HOH HOH . O 5 HOH A 8 2033 2033 HOH HOH . O 5 HOH A 9 2038 2038 HOH HOH . O 5 HOH A 10 2050 2050 HOH HOH . O 5 HOH A 11 2054 2054 HOH HOH . O 5 HOH A 12 2055 2055 HOH HOH . O 5 HOH A 13 2059 2059 HOH HOH . O 5 HOH A 14 2071 2071 HOH HOH . O 5 HOH A 15 2084 2084 HOH HOH . O 5 HOH A 16 2089 2089 HOH HOH . O 5 HOH A 17 2093 2093 HOH HOH . O 5 HOH A 18 2098 2098 HOH HOH . O 5 HOH A 19 2106 2106 HOH HOH . O 5 HOH A 20 2135 2135 HOH HOH . O 5 HOH A 21 2136 2136 HOH HOH . O 5 HOH A 22 2138 2138 HOH HOH . O 5 HOH A 23 2139 2139 HOH HOH . O 5 HOH A 24 2140 2140 HOH HOH . O 5 HOH A 25 2141 2141 HOH HOH . O 5 HOH A 26 2142 2142 HOH HOH . O 5 HOH A 27 2144 2144 HOH HOH . O 5 HOH A 28 2145 2145 HOH HOH . O 5 HOH A 29 2146 2146 HOH HOH . O 5 HOH A 30 2147 2147 HOH HOH . O 5 HOH A 31 2148 2148 HOH HOH . O 5 HOH A 32 2149 2149 HOH HOH . O 5 HOH A 33 2150 2150 HOH HOH . O 5 HOH A 34 2152 2152 HOH HOH . O 5 HOH A 35 2155 2155 HOH HOH . O 5 HOH A 36 2157 2157 HOH HOH . O 5 HOH A 37 2158 2158 HOH HOH . O 5 HOH A 38 2159 2159 HOH HOH . O 5 HOH A 39 2163 2163 HOH HOH . O 5 HOH A 40 2164 2164 HOH HOH . O 5 HOH A 41 2165 2165 HOH HOH . O 5 HOH A 42 2166 2166 HOH HOH . O 5 HOH A 43 2169 2169 HOH HOH . O 5 HOH A 44 2170 2170 HOH HOH . O 5 HOH A 45 2171 2171 HOH HOH . O 5 HOH A 46 2172 2172 HOH HOH . O 5 HOH A 47 2173 2173 HOH HOH . O 5 HOH A 48 2174 2174 HOH HOH . O 5 HOH A 49 2175 2175 HOH HOH . O 5 HOH A 50 2176 2176 HOH HOH . O 5 HOH A 51 2181 2181 HOH HOH . O 5 HOH A 52 2182 2182 HOH HOH . O 5 HOH A 53 2183 2183 HOH HOH . O 5 HOH A 54 2187 2187 HOH HOH . O 5 HOH A 55 2188 2188 HOH HOH . O 5 HOH A 56 2190 2190 HOH HOH . O 5 HOH A 57 2191 2191 HOH HOH . O 5 HOH A 58 2195 2195 HOH HOH . O 5 HOH A 59 2196 2196 HOH HOH . O 5 HOH A 60 2197 2197 HOH HOH . O 5 HOH A 61 2200 2200 HOH HOH . O 5 HOH A 62 2203 2203 HOH HOH . O 5 HOH A 63 2220 2220 HOH HOH . O 5 HOH A 64 2260 2260 HOH HOH . O 5 HOH A 65 2267 2267 HOH HOH . O 5 HOH A 66 2280 2280 HOH HOH . P 5 HOH B 1 2003 2003 HOH HOH . P 5 HOH B 2 2004 2004 HOH HOH . P 5 HOH B 3 2010 2010 HOH HOH . P 5 HOH B 4 2011 2011 HOH HOH . P 5 HOH B 5 2025 2025 HOH HOH . P 5 HOH B 6 2034 2034 HOH HOH . P 5 HOH B 7 2037 2037 HOH HOH . P 5 HOH B 8 2043 2043 HOH HOH . P 5 HOH B 9 2046 2046 HOH HOH . P 5 HOH B 10 2049 2049 HOH HOH . P 5 HOH B 11 2052 2052 HOH HOH . P 5 HOH B 12 2060 2060 HOH HOH . P 5 HOH B 13 2062 2062 HOH HOH . P 5 HOH B 14 2065 2065 HOH HOH . P 5 HOH B 15 2072 2072 HOH HOH . P 5 HOH B 16 2077 2077 HOH HOH . P 5 HOH B 17 2079 2079 HOH HOH . P 5 HOH B 18 2087 2087 HOH HOH . P 5 HOH B 19 2091 2091 HOH HOH . P 5 HOH B 20 2096 2096 HOH HOH . P 5 HOH B 21 2101 2101 HOH HOH . P 5 HOH B 22 2110 2110 HOH HOH . P 5 HOH B 23 2112 2112 HOH HOH . P 5 HOH B 24 2114 2114 HOH HOH . P 5 HOH B 25 2115 2115 HOH HOH . P 5 HOH B 26 2119 2119 HOH HOH . P 5 HOH B 27 2120 2120 HOH HOH . P 5 HOH B 28 2123 2123 HOH HOH . P 5 HOH B 29 2125 2125 HOH HOH . P 5 HOH B 30 2129 2129 HOH HOH . P 5 HOH B 31 2133 2133 HOH HOH . P 5 HOH B 32 2134 2134 HOH HOH . P 5 HOH B 33 2137 2137 HOH HOH . P 5 HOH B 34 2143 2143 HOH HOH . P 5 HOH B 35 2153 2153 HOH HOH . P 5 HOH B 36 2154 2154 HOH HOH . P 5 HOH B 37 2156 2156 HOH HOH . P 5 HOH B 38 2167 2167 HOH HOH . P 5 HOH B 39 2177 2177 HOH HOH . P 5 HOH B 40 2178 2178 HOH HOH . P 5 HOH B 41 2179 2179 HOH HOH . P 5 HOH B 42 2180 2180 HOH HOH . P 5 HOH B 43 2185 2185 HOH HOH . P 5 HOH B 44 2198 2198 HOH HOH . P 5 HOH B 45 2199 2199 HOH HOH . P 5 HOH B 46 2201 2201 HOH HOH . P 5 HOH B 47 2202 2202 HOH HOH . P 5 HOH B 48 2204 2204 HOH HOH . P 5 HOH B 49 2205 2205 HOH HOH . P 5 HOH B 50 2206 2206 HOH HOH . P 5 HOH B 51 2207 2207 HOH HOH . P 5 HOH B 52 2208 2208 HOH HOH . P 5 HOH B 53 2209 2209 HOH HOH . P 5 HOH B 54 2210 2210 HOH HOH . P 5 HOH B 55 2211 2211 HOH HOH . P 5 HOH B 56 2212 2212 HOH HOH . P 5 HOH B 57 2213 2213 HOH HOH . P 5 HOH B 58 2214 2214 HOH HOH . P 5 HOH B 59 2215 2215 HOH HOH . P 5 HOH B 60 2216 2216 HOH HOH . P 5 HOH B 61 2217 2217 HOH HOH . P 5 HOH B 62 2219 2219 HOH HOH . P 5 HOH B 63 2224 2224 HOH HOH . P 5 HOH B 64 2226 2226 HOH HOH . P 5 HOH B 65 2279 2279 HOH HOH . Q 5 HOH C 1 2000 2000 HOH HOH . Q 5 HOH C 2 2001 2001 HOH HOH . Q 5 HOH C 3 2007 2007 HOH HOH . Q 5 HOH C 4 2015 2015 HOH HOH . Q 5 HOH C 5 2016 2016 HOH HOH . Q 5 HOH C 6 2017 2017 HOH HOH . Q 5 HOH C 7 2018 2018 HOH HOH . Q 5 HOH C 8 2020 2020 HOH HOH . Q 5 HOH C 9 2026 2026 HOH HOH . Q 5 HOH C 10 2029 2029 HOH HOH . Q 5 HOH C 11 2030 2030 HOH HOH . Q 5 HOH C 12 2031 2031 HOH HOH . Q 5 HOH C 13 2035 2035 HOH HOH . Q 5 HOH C 14 2036 2036 HOH HOH . Q 5 HOH C 15 2040 2040 HOH HOH . Q 5 HOH C 16 2041 2041 HOH HOH . Q 5 HOH C 17 2047 2047 HOH HOH . Q 5 HOH C 18 2061 2061 HOH HOH . Q 5 HOH C 19 2066 2066 HOH HOH . Q 5 HOH C 20 2067 2067 HOH HOH . Q 5 HOH C 21 2070 2070 HOH HOH . Q 5 HOH C 22 2078 2078 HOH HOH . Q 5 HOH C 23 2081 2081 HOH HOH . Q 5 HOH C 24 2082 2082 HOH HOH . Q 5 HOH C 25 2083 2083 HOH HOH . Q 5 HOH C 26 2085 2085 HOH HOH . Q 5 HOH C 27 2094 2094 HOH HOH . Q 5 HOH C 28 2095 2095 HOH HOH . Q 5 HOH C 29 2097 2097 HOH HOH . Q 5 HOH C 30 2100 2100 HOH HOH . Q 5 HOH C 31 2103 2103 HOH HOH . Q 5 HOH C 32 2105 2105 HOH HOH . Q 5 HOH C 33 2108 2108 HOH HOH . Q 5 HOH C 34 2109 2109 HOH HOH . Q 5 HOH C 35 2116 2116 HOH HOH . Q 5 HOH C 36 2117 2117 HOH HOH . Q 5 HOH C 37 2118 2118 HOH HOH . Q 5 HOH C 38 2121 2121 HOH HOH . Q 5 HOH C 39 2127 2127 HOH HOH . Q 5 HOH C 40 2128 2128 HOH HOH . Q 5 HOH C 41 2130 2130 HOH HOH . Q 5 HOH C 42 2131 2131 HOH HOH . Q 5 HOH C 43 2132 2132 HOH HOH . Q 5 HOH C 44 2184 2184 HOH HOH . Q 5 HOH C 45 2186 2186 HOH HOH . Q 5 HOH C 46 2189 2189 HOH HOH . Q 5 HOH C 47 2192 2192 HOH HOH . Q 5 HOH C 48 2193 2193 HOH HOH . Q 5 HOH C 49 2194 2194 HOH HOH . Q 5 HOH C 50 2218 2218 HOH HOH . Q 5 HOH C 51 2221 2221 HOH HOH . Q 5 HOH C 52 2222 2222 HOH HOH . Q 5 HOH C 53 2227 2227 HOH HOH . Q 5 HOH C 54 2228 2228 HOH HOH . Q 5 HOH C 55 2230 2230 HOH HOH . Q 5 HOH C 56 2231 2231 HOH HOH . Q 5 HOH C 57 2233 2233 HOH HOH . Q 5 HOH C 58 2234 2234 HOH HOH . Q 5 HOH C 59 2235 2235 HOH HOH . Q 5 HOH C 60 2236 2236 HOH HOH . Q 5 HOH C 61 2238 2238 HOH HOH . Q 5 HOH C 62 2241 2241 HOH HOH . Q 5 HOH C 63 2242 2242 HOH HOH . Q 5 HOH C 64 2243 2243 HOH HOH . Q 5 HOH C 65 2244 2244 HOH HOH . Q 5 HOH C 66 2245 2245 HOH HOH . Q 5 HOH C 67 2246 2246 HOH HOH . Q 5 HOH C 68 2247 2247 HOH HOH . Q 5 HOH C 69 2248 2248 HOH HOH . Q 5 HOH C 70 2252 2252 HOH HOH . Q 5 HOH C 71 2253 2253 HOH HOH . Q 5 HOH C 72 2254 2254 HOH HOH . Q 5 HOH C 73 2255 2255 HOH HOH . Q 5 HOH C 74 2281 2281 HOH HOH . R 5 HOH D 1 2006 2006 HOH HOH . R 5 HOH D 2 2009 2009 HOH HOH . R 5 HOH D 3 2012 2012 HOH HOH . R 5 HOH D 4 2013 2013 HOH HOH . R 5 HOH D 5 2014 2014 HOH HOH . R 5 HOH D 6 2024 2024 HOH HOH . R 5 HOH D 7 2027 2027 HOH HOH . R 5 HOH D 8 2028 2028 HOH HOH . R 5 HOH D 9 2032 2032 HOH HOH . R 5 HOH D 10 2039 2039 HOH HOH . R 5 HOH D 11 2042 2042 HOH HOH . R 5 HOH D 12 2044 2044 HOH HOH . R 5 HOH D 13 2045 2045 HOH HOH . R 5 HOH D 14 2048 2048 HOH HOH . R 5 HOH D 15 2051 2051 HOH HOH . R 5 HOH D 16 2053 2053 HOH HOH . R 5 HOH D 17 2056 2056 HOH HOH . R 5 HOH D 18 2057 2057 HOH HOH . R 5 HOH D 19 2058 2058 HOH HOH . R 5 HOH D 20 2063 2063 HOH HOH . R 5 HOH D 21 2064 2064 HOH HOH . R 5 HOH D 22 2068 2068 HOH HOH . R 5 HOH D 23 2069 2069 HOH HOH . R 5 HOH D 24 2073 2073 HOH HOH . R 5 HOH D 25 2074 2074 HOH HOH . R 5 HOH D 26 2075 2075 HOH HOH . R 5 HOH D 27 2076 2076 HOH HOH . R 5 HOH D 28 2080 2080 HOH HOH . R 5 HOH D 29 2086 2086 HOH HOH . R 5 HOH D 30 2088 2088 HOH HOH . R 5 HOH D 31 2090 2090 HOH HOH . R 5 HOH D 32 2092 2092 HOH HOH . R 5 HOH D 33 2099 2099 HOH HOH . R 5 HOH D 34 2102 2102 HOH HOH . R 5 HOH D 35 2104 2104 HOH HOH . R 5 HOH D 36 2107 2107 HOH HOH . R 5 HOH D 37 2111 2111 HOH HOH . R 5 HOH D 38 2113 2113 HOH HOH . R 5 HOH D 39 2122 2122 HOH HOH . R 5 HOH D 40 2124 2124 HOH HOH . R 5 HOH D 41 2126 2126 HOH HOH . R 5 HOH D 42 2160 2160 HOH HOH . R 5 HOH D 43 2161 2161 HOH HOH . R 5 HOH D 44 2162 2162 HOH HOH . R 5 HOH D 45 2168 2168 HOH HOH . R 5 HOH D 46 2223 2223 HOH HOH . R 5 HOH D 47 2225 2225 HOH HOH . R 5 HOH D 48 2229 2229 HOH HOH . R 5 HOH D 49 2232 2232 HOH HOH . R 5 HOH D 50 2237 2237 HOH HOH . R 5 HOH D 51 2239 2239 HOH HOH . R 5 HOH D 52 2240 2240 HOH HOH . R 5 HOH D 53 2249 2249 HOH HOH . R 5 HOH D 54 2250 2250 HOH HOH . R 5 HOH D 55 2251 2251 HOH HOH . R 5 HOH D 56 2256 2256 HOH HOH . R 5 HOH D 57 2257 2257 HOH HOH . R 5 HOH D 58 2258 2258 HOH HOH . R 5 HOH D 59 2259 2259 HOH HOH . R 5 HOH D 60 2261 2261 HOH HOH . R 5 HOH D 61 2262 2262 HOH HOH . R 5 HOH D 62 2263 2263 HOH HOH . R 5 HOH D 63 2264 2264 HOH HOH . R 5 HOH D 64 2265 2265 HOH HOH . R 5 HOH D 65 2266 2266 HOH HOH . R 5 HOH D 66 2268 2268 HOH HOH . R 5 HOH D 67 2270 2270 HOH HOH . R 5 HOH D 68 2271 2271 HOH HOH . R 5 HOH D 69 2272 2272 HOH HOH . R 5 HOH D 70 2273 2273 HOH HOH . R 5 HOH D 71 2274 2274 HOH HOH . R 5 HOH D 72 2275 2275 HOH HOH . R 5 HOH D 73 2276 2276 HOH HOH . R 5 HOH D 74 2277 2277 HOH HOH . R 5 HOH D 75 2278 2278 HOH HOH . R 5 HOH D 76 2282 2282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . K 4 27.353 17.217 -43.378 1 75.9 ? S1 DTT 301 C 1 HETATM 2 C C1 DTT . . . K 4 28.208 18.756 -43.881 1 72.6 ? C1 DTT 301 C 1 HETATM 3 C C2 DTT . . . K 4 29.734 18.672 -43.694 1 71.86 ? C2 DTT 301 C 1 HETATM 4 O O2 DTT . . . K 4 30.315 19.765 -44.375 1 72.06 ? O2 DTT 301 C 1 HETATM 5 C C3 DTT . . . K 4 30.422 17.375 -44.216 1 70.93 ? C3 DTT 301 C 1 HETATM 6 O O3 DTT . . . K 4 31.68 17.71 -44.788 1 69.46 ? O3 DTT 301 C 1 HETATM 7 C C4 DTT . . . K 4 30.678 16.272 -43.16 1 70.06 ? C4 DTT 301 C 1 HETATM 8 S S4 DTT . . . K 4 32.214 15.337 -43.498 1 68.87 ? S4 DTT 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #