data_1DQ9
#
_model_server_result.job_id            H5lR3c_Y03QJ0SPoSV84MQ 
_model_server_result.datetime_utc      '2024-11-14 17:06:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1dq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":103}' 
#
_entry.id    1DQ9 
#
_exptl.entry_id    1DQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              906.62 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.59 
_cell.angle_gamma         90 
_cell.entry_id            1DQ9 
_cell.length_a            74.58 
_cell.length_b            171.2 
_cell.length_c            80.37 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1DQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C27 H39 N7 O20 P3 S -5' 
_chem_comp.formula_weight    906.62 
_chem_comp.id                HMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (S)-HMG-COA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2A O5A HMG doub 150 n n 
P2A O4A HMG sing 151 n n 
P2A O3A HMG sing 152 n n 
P2A O6A HMG sing 153 n n 
O3A P1A HMG sing 154 n n 
O6A CCP HMG sing 155 n n 
P1A O1A HMG doub 156 n n 
P1A O2A HMG sing 157 n n 
P1A O5B HMG sing 158 n n 
O5B C5B HMG sing 159 n n 
C5B C4B HMG sing 160 n n 
C5B "H5'1" HMG sing 161 n n 
C5B "H5'2" HMG sing 162 n n 
C4B O4B HMG sing 163 n n 
C4B C3B HMG sing 164 n n 
C4B H4B HMG sing 165 n n 
O4B C1B HMG sing 166 n n 
C3B O3B HMG sing 167 n n 
C3B C2B HMG sing 168 n n 
C3B H3B HMG sing 169 n n 
O3B P3B HMG sing 170 n n 
C2B O2B HMG sing 171 n n 
C2B C1B HMG sing 172 n n 
C2B H2' HMG sing 173 n n 
O2B H2B HMG sing 174 n n 
C1B N9A HMG sing 175 n n 
C1B H1B HMG sing 176 n n 
P3B O7A HMG doub 177 n n 
P3B O8A HMG sing 178 n n 
P3B O9A HMG sing 179 n n 
N9A C4A HMG sing 180 n y 
N9A C8A HMG sing 181 n y 
C4A N3A HMG sing 182 n y 
C4A C5A HMG doub 183 n y 
N3A C2A HMG doub 184 n y 
C2A N1A HMG sing 185 n y 
C2A H2A1 HMG sing 186 n n 
N1A C6A HMG doub 187 n y 
C6A C5A HMG sing 188 n y 
C6A N6A HMG sing 189 n n 
C5A N7A HMG sing 190 n y 
N7A C8A HMG doub 191 n y 
C8A H8A1 HMG sing 192 n n 
N6A H61A HMG sing 193 n n 
N6A H62A HMG sing 194 n n 
CBP CCP HMG sing 195 n n 
CBP CDP HMG sing 196 n n 
CBP CEP HMG sing 197 n n 
CBP CAP HMG sing 198 n n 
CCP H121 HMG sing 199 n n 
CCP H122 HMG sing 200 n n 
CDP H131 HMG sing 201 n n 
CDP H132 HMG sing 202 n n 
CDP H133 HMG sing 203 n n 
CEP H141 HMG sing 204 n n 
CEP H142 HMG sing 205 n n 
CEP H143 HMG sing 206 n n 
CAP OAP HMG sing 207 n n 
CAP C9P HMG sing 208 n n 
CAP H101 HMG sing 209 n n 
OAP H10 HMG sing 210 n n 
C9P O9P HMG doub 211 n n 
C9P N8P HMG sing 212 n n 
N8P C7P HMG sing 213 n n 
N8P H8 HMG sing 214 n n 
C7P C6P HMG sing 215 n n 
C7P H7P1 HMG sing 216 n n 
C7P H7P2 HMG sing 217 n n 
C6P C5P HMG sing 218 n n 
C6P H6P1 HMG sing 219 n n 
C6P H6P2 HMG sing 220 n n 
C5P O5P HMG doub 221 n n 
C5P N4P HMG sing 222 n n 
N4P C3P HMG sing 223 n n 
N4P H4 HMG sing 224 n n 
C3P C2P HMG sing 225 n n 
C3P H3P1 HMG sing 226 n n 
C3P H3P2 HMG sing 227 n n 
C2P S1P HMG sing 228 n n 
C2P H2P1 HMG sing 229 n n 
C2P H2P2 HMG sing 230 n n 
S1P C1 HMG sing 231 n n 
C1 O2 HMG doub 232 n n 
C1 C2 HMG sing 233 n n 
C2 C3 HMG sing 234 n n 
C2 H21 HMG sing 235 n n 
C2 H22 HMG sing 236 n n 
C3 O7 HMG sing 237 n n 
C3 C4 HMG sing 238 n n 
C3 C6 HMG sing 239 n n 
O7 HX HMG sing 240 n n 
C4 C5 HMG sing 241 n n 
C4 H41 HMG sing 242 n n 
C4 H42 HMG sing 243 n n 
C5 O3 HMG doub 244 n n 
C5 O4 HMG sing 245 n n 
C6 H61 HMG sing 246 n n 
C6 H62 HMG sing 247 n n 
C6 H63 HMG sing 248 n n 
#
_atom_sites.entry_id                     1DQ9 
_atom_sites.fract_transf_matrix[1][1]    0.013408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006712 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HMG A 1 101 101 HMG HMG . 
F 2 HMG B 1 102 102 HMG HMG . 
G 2 HMG C 1 103 103 HMG HMG . 
H 2 HMG D 1 104 104 HMG HMG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2A HMG . . . G 2 -21.263 -36.505 19.235 1 62.65 ? P2A HMG 103 C 1 
HETATM 2 O O5A HMG . . . G 2 -21.714 -34.991 19.572 1 62.65 ? O5A HMG 103 C 1 
HETATM 3 O O4A HMG . . . G 2 -21.198 -36.743 17.642 1 62.65 ? O4A HMG 103 C 1 
HETATM 4 O O3A HMG . . . G 2 -22.299 -37.521 19.9 1 62.65 ? O3A HMG 103 C 1 
HETATM 5 O O6A HMG . . . G 2 -19.815 -36.79 19.869 1 62.65 ? O6A HMG 103 C 1 
HETATM 6 P P1A HMG . . . G 2 -22.379 -39.048 19.415 1 62.65 ? P1A HMG 103 C 1 
HETATM 7 O O1A HMG . . . G 2 -23.416 -39.2 18.183 1 62.65 ? O1A HMG 103 C 1 
HETATM 8 O O2A HMG . . . G 2 -22.832 -39.976 20.655 1 62.65 ? O2A HMG 103 C 1 
HETATM 9 O O5B HMG . . . G 2 -20.95 -39.515 18.902 1 62.65 ? O5B HMG 103 C 1 
HETATM 10 C C5B HMG . . . G 2 -20.536 -40.827 19.174 1 62.65 ? C5B HMG 103 C 1 
HETATM 11 C C4B HMG . . . G 2 -19.219 -41.089 18.463 1 62.65 ? C4B HMG 103 C 1 
HETATM 12 O O4B HMG . . . G 2 -18.245 -40.162 18.946 1 62.65 ? O4B HMG 103 C 1 
HETATM 13 C C3B HMG . . . G 2 -18.699 -42.493 18.761 1 62.65 ? C3B HMG 103 C 1 
HETATM 14 O O3B HMG . . . G 2 -18.844 -43.304 17.6 1 62.65 ? O3B HMG 103 C 1 
HETATM 15 C C2B HMG . . . G 2 -17.252 -42.297 19.203 1 62.65 ? C2B HMG 103 C 1 
HETATM 16 O O2B HMG . . . G 2 -16.302 -42.53 18.161 1 62.65 ? O2B HMG 103 C 1 
HETATM 17 C C1B HMG . . . G 2 -17.269 -40.862 19.738 1 62.65 ? C1B HMG 103 C 1 
HETATM 18 P P3B HMG . . . G 2 -20.114 -44.269 17.488 1 62.65 ? P3B HMG 103 C 1 
HETATM 19 O O7A HMG . . . G 2 -19.755 -45.662 18.222 1 62.65 ? O7A HMG 103 C 1 
HETATM 20 O O8A HMG . . . G 2 -21.387 -43.612 18.226 1 62.65 ? O8A HMG 103 C 1 
HETATM 21 O O9A HMG . . . G 2 -20.42 -44.484 15.907 1 62.65 ? O9A HMG 103 C 1 
HETATM 22 N N9A HMG . . . G 2 -17.623 -40.815 21.191 1 62.65 ? N9A HMG 103 C 1 
HETATM 23 C C4A HMG . . . G 2 -16.976 -41.441 22.245 1 62.65 ? C4A HMG 103 C 1 
HETATM 24 N N3A HMG . . . G 2 -15.795 -42.315 22.329 1 62.65 ? N3A HMG 103 C 1 
HETATM 25 C C2A HMG . . . G 2 -15.468 -42.717 23.53 1 62.65 ? C2A HMG 103 C 1 
HETATM 26 N N1A HMG . . . G 2 -16.074 -42.432 24.67 1 62.65 ? N1A HMG 103 C 1 
HETATM 27 C C6A HMG . . . G 2 -17.151 -41.654 24.706 1 62.65 ? C6A HMG 103 C 1 
HETATM 28 C C5A HMG . . . G 2 -17.688 -41.092 23.475 1 62.65 ? C5A HMG 103 C 1 
HETATM 29 N N7A HMG . . . G 2 -18.783 -40.266 23.252 1 62.65 ? N7A HMG 103 C 1 
HETATM 30 C C8A HMG . . . G 2 -18.646 -40.173 21.887 1 62.65 ? C8A HMG 103 C 1 
HETATM 31 N N6A HMG . . . G 2 -17.705 -41.41 25.889 1 62.65 ? N6A HMG 103 C 1 
HETATM 32 C CBP HMG . . . G 2 -18.092 -35.752 21.379 1 62.65 ? CBP HMG 103 C 1 
HETATM 33 C CCP HMG . . . G 2 -19.503 -36.413 21.229 1 62.65 ? CCP HMG 103 C 1 
HETATM 34 C CDP HMG . . . G 2 -17.872 -35.404 22.879 1 62.65 ? CDP HMG 103 C 1 
HETATM 35 C CEP HMG . . . G 2 -17.028 -36.814 20.953 1 62.65 ? CEP HMG 103 C 1 
HETATM 36 C CAP HMG . . . G 2 -18.029 -34.442 20.475 1 62.65 ? CAP HMG 103 C 1 
HETATM 37 O OAP HMG . . . G 2 -19.024 -33.495 20.934 1 62.65 ? OAP HMG 103 C 1 
HETATM 38 C C9P HMG . . . G 2 -16.634 -33.757 20.409 1 62.65 ? C9P HMG 103 C 1 
HETATM 39 O O9P HMG . . . G 2 -15.723 -34.302 19.745 1 62.65 ? O9P HMG 103 C 1 
HETATM 40 N N8P HMG . . . G 2 -16.462 -32.594 21.093 1 62.65 ? N8P HMG 103 C 1 
HETATM 41 C C7P HMG . . . G 2 -15.172 -31.855 21.103 1 62.65 ? C7P HMG 103 C 1 
HETATM 42 C C6P HMG . . . G 2 -14.118 -32.545 22.008 1 62.65 ? C6P HMG 103 C 1 
HETATM 43 C C5P HMG . . . G 2 -12.754 -31.834 22.021 1 62.65 ? C5P HMG 103 C 1 
HETATM 44 O O5P HMG . . . G 2 -12.242 -31.487 20.937 1 62.65 ? O5P HMG 103 C 1 
HETATM 45 N N4P HMG . . . G 2 -12.188 -31.641 23.247 1 62.65 ? N4P HMG 103 C 1 
HETATM 46 C C3P HMG . . . G 2 -10.726 -31.511 23.495 1 62.65 ? C3P HMG 103 C 1 
HETATM 47 C C2P HMG . . . G 2 -10.105 -30.281 22.762 1 62.65 ? C2P HMG 103 C 1 
HETATM 48 S S1P HMG . . . G 2 -10.749 -28.65 23.36 1 62.65 ? S1P HMG 103 C 1 
HETATM 49 C C1 HMG . . . G 2 -9.233 -27.708 23.736 1 62.65 ? C1 HMG 103 C 1 
HETATM 50 O O2 HMG . . . G 2 -8.757 -27.615 24.884 1 62.65 ? O2 HMG 103 C 1 
HETATM 51 C C2 HMG . . . G 2 -8.498 -27.035 22.569 1 62.65 ? C2 HMG 103 C 1 
HETATM 52 C C3 HMG . . . G 2 -8.921 -25.595 22.187 1 62.65 ? C3 HMG 103 C 1 
HETATM 53 O O7 HMG . . . G 2 -8.731 -24.753 23.327 1 62.65 ? O7 HMG 103 C 1 
HETATM 54 C C4 HMG . . . G 2 -7.965 -25.132 21.048 1 62.65 ? C4 HMG 103 C 1 
HETATM 55 C C5 HMG . . . G 2 -8.464 -24.077 20.056 1 62.65 ? C5 HMG 103 C 1 
HETATM 56 O O3 HMG . . . G 2 -9.221 -24.33 19.144 1 62.65 ? O3 HMG 103 C 1 
HETATM 57 O O4 HMG . . . G 2 -7.963 -22.829 20.317 1 62.65 ? O4 HMG 103 C 1 
HETATM 58 C C6 HMG . . . G 2 -10.419 -25.529 21.773 1 62.65 ? C6 HMG 103 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           58 
#