data_1DQ9 # _model_server_result.job_id 8vIfna65ujugfBkW7kxLKw _model_server_result.datetime_utc '2024-11-14 16:58:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":104}' # _entry.id 1DQ9 # _exptl.entry_id 1DQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 906.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.59 _cell.angle_gamma 90 _cell.entry_id 1DQ9 _cell.length_a 74.58 _cell.length_b 171.2 _cell.length_c 80.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H39 N7 O20 P3 S -5' _chem_comp.formula_weight 906.62 _chem_comp.id HMG _chem_comp.mon_nstd_flag . _chem_comp.name '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (S)-HMG-COA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2A O5A HMG doub 150 n n P2A O4A HMG sing 151 n n P2A O3A HMG sing 152 n n P2A O6A HMG sing 153 n n O3A P1A HMG sing 154 n n O6A CCP HMG sing 155 n n P1A O1A HMG doub 156 n n P1A O2A HMG sing 157 n n P1A O5B HMG sing 158 n n O5B C5B HMG sing 159 n n C5B C4B HMG sing 160 n n C5B "H5'1" HMG sing 161 n n C5B "H5'2" HMG sing 162 n n C4B O4B HMG sing 163 n n C4B C3B HMG sing 164 n n C4B H4B HMG sing 165 n n O4B C1B HMG sing 166 n n C3B O3B HMG sing 167 n n C3B C2B HMG sing 168 n n C3B H3B HMG sing 169 n n O3B P3B HMG sing 170 n n C2B O2B HMG sing 171 n n C2B C1B HMG sing 172 n n C2B H2' HMG sing 173 n n O2B H2B HMG sing 174 n n C1B N9A HMG sing 175 n n C1B H1B HMG sing 176 n n P3B O7A HMG doub 177 n n P3B O8A HMG sing 178 n n P3B O9A HMG sing 179 n n N9A C4A HMG sing 180 n y N9A C8A HMG sing 181 n y C4A N3A HMG sing 182 n y C4A C5A HMG doub 183 n y N3A C2A HMG doub 184 n y C2A N1A HMG sing 185 n y C2A H2A1 HMG sing 186 n n N1A C6A HMG doub 187 n y C6A C5A HMG sing 188 n y C6A N6A HMG sing 189 n n C5A N7A HMG sing 190 n y N7A C8A HMG doub 191 n y C8A H8A1 HMG sing 192 n n N6A H61A HMG sing 193 n n N6A H62A HMG sing 194 n n CBP CCP HMG sing 195 n n CBP CDP HMG sing 196 n n CBP CEP HMG sing 197 n n CBP CAP HMG sing 198 n n CCP H121 HMG sing 199 n n CCP H122 HMG sing 200 n n CDP H131 HMG sing 201 n n CDP H132 HMG sing 202 n n CDP H133 HMG sing 203 n n CEP H141 HMG sing 204 n n CEP H142 HMG sing 205 n n CEP H143 HMG sing 206 n n CAP OAP HMG sing 207 n n CAP C9P HMG sing 208 n n CAP H101 HMG sing 209 n n OAP H10 HMG sing 210 n n C9P O9P HMG doub 211 n n C9P N8P HMG sing 212 n n N8P C7P HMG sing 213 n n N8P H8 HMG sing 214 n n C7P C6P HMG sing 215 n n C7P H7P1 HMG sing 216 n n C7P H7P2 HMG sing 217 n n C6P C5P HMG sing 218 n n C6P H6P1 HMG sing 219 n n C6P H6P2 HMG sing 220 n n C5P O5P HMG doub 221 n n C5P N4P HMG sing 222 n n N4P C3P HMG sing 223 n n N4P H4 HMG sing 224 n n C3P C2P HMG sing 225 n n C3P H3P1 HMG sing 226 n n C3P H3P2 HMG sing 227 n n C2P S1P HMG sing 228 n n C2P H2P1 HMG sing 229 n n C2P H2P2 HMG sing 230 n n S1P C1 HMG sing 231 n n C1 O2 HMG doub 232 n n C1 C2 HMG sing 233 n n C2 C3 HMG sing 234 n n C2 H21 HMG sing 235 n n C2 H22 HMG sing 236 n n C3 O7 HMG sing 237 n n C3 C4 HMG sing 238 n n C3 C6 HMG sing 239 n n O7 HX HMG sing 240 n n C4 C5 HMG sing 241 n n C4 H41 HMG sing 242 n n C4 H42 HMG sing 243 n n C5 O3 HMG doub 244 n n C5 O4 HMG sing 245 n n C6 H61 HMG sing 246 n n C6 H62 HMG sing 247 n n C6 H63 HMG sing 248 n n # _atom_sites.entry_id 1DQ9 _atom_sites.fract_transf_matrix[1][1] 0.013408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006712 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HMG A 1 101 101 HMG HMG . F 2 HMG B 1 102 102 HMG HMG . G 2 HMG C 1 103 103 HMG HMG . H 2 HMG D 1 104 104 HMG HMG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2A HMG . . . H 2 28.499 -32.577 37.576 1 53.3 ? P2A HMG 104 D 1 HETATM 2 O O5A HMG . . . H 2 29.561 -32.893 36.418 1 53.3 ? O5A HMG 104 D 1 HETATM 3 O O4A HMG . . . H 2 28.803 -31.112 38.183 1 53.3 ? O4A HMG 104 D 1 HETATM 4 O O3A HMG . . . H 2 28.505 -33.727 38.718 1 53.3 ? O3A HMG 104 D 1 HETATM 5 O O6A HMG . . . H 2 27.022 -32.615 36.968 1 53.3 ? O6A HMG 104 D 1 HETATM 6 P P1A HMG . . . H 2 29.023 -33.519 40.235 1 53.3 ? P1A HMG 104 D 1 HETATM 7 O O1A HMG . . . H 2 30.555 -33.031 40.207 1 53.3 ? O1A HMG 104 D 1 HETATM 8 O O2A HMG . . . H 2 28.881 -34.932 41.005 1 53.3 ? O2A HMG 104 D 1 HETATM 9 O O5B HMG . . . H 2 28.159 -32.384 40.972 1 53.3 ? O5B HMG 104 D 1 HETATM 10 C C5B HMG . . . H 2 27.326 -32.763 42.041 1 53.3 ? C5B HMG 104 D 1 HETATM 11 C C4B HMG . . . H 2 25.966 -32.083 41.94 1 53.3 ? C4B HMG 104 D 1 HETATM 12 O O4B HMG . . . H 2 25.314 -32.469 40.733 1 53.3 ? O4B HMG 104 D 1 HETATM 13 C C3B HMG . . . H 2 25.083 -32.537 43.074 1 53.3 ? C3B HMG 104 D 1 HETATM 14 O O3B HMG . . . H 2 25.169 -31.643 44.17 1 53.3 ? O3B HMG 104 D 1 HETATM 15 C C2B HMG . . . H 2 23.691 -32.664 42.487 1 53.3 ? C2B HMG 104 D 1 HETATM 16 O O2B HMG . . . H 2 22.844 -31.561 42.765 1 53.3 ? O2B HMG 104 D 1 HETATM 17 C C1B HMG . . . H 2 23.969 -32.907 41.006 1 53.3 ? C1B HMG 104 D 1 HETATM 18 P P3B HMG . . . H 2 25.629 -32.24 45.592 1 53.3 ? P3B HMG 104 D 1 HETATM 19 O O7A HMG . . . H 2 24.844 -31.407 46.751 1 53.3 ? O7A HMG 104 D 1 HETATM 20 O O8A HMG . . . H 2 25.199 -33.799 45.675 1 53.3 ? O8A HMG 104 D 1 HETATM 21 O O9A HMG . . . H 2 27.254 -32.115 45.714 1 53.3 ? O9A HMG 104 D 1 HETATM 22 N N9A HMG . . . H 2 23.816 -34.353 40.66 1 53.3 ? N9A HMG 104 D 1 HETATM 23 C C4A HMG . . . H 2 22.714 -35.184 40.818 1 53.3 ? C4A HMG 104 D 1 HETATM 24 N N3A HMG . . . H 2 21.364 -34.991 41.363 1 53.3 ? N3A HMG 104 D 1 HETATM 25 C C2A HMG . . . H 2 20.58 -36.046 41.337 1 53.3 ? C2A HMG 104 D 1 HETATM 26 N N1A HMG . . . H 2 20.86 -37.254 40.881 1 53.3 ? N1A HMG 104 D 1 HETATM 27 C C6A HMG . . . H 2 22.052 -37.524 40.368 1 53.3 ? C6A HMG 104 D 1 HETATM 28 C C5A HMG . . . H 2 23.077 -36.501 40.307 1 53.3 ? C5A HMG 104 D 1 HETATM 29 N N7A HMG . . . H 2 24.374 -36.561 39.824 1 53.3 ? N7A HMG 104 D 1 HETATM 30 C C8A HMG . . . H 2 24.712 -35.251 40.078 1 53.3 ? C8A HMG 104 D 1 HETATM 31 N N6A HMG . . . H 2 22.289 -38.752 39.922 1 53.3 ? N6A HMG 104 D 1 HETATM 32 C CBP HMG . . . H 2 25.229 -33.58 35.568 1 53.3 ? CBP HMG 104 D 1 HETATM 33 C CCP HMG . . . H 2 26.437 -33.84 36.506 1 53.3 ? CCP HMG 104 D 1 HETATM 34 C CDP HMG . . . H 2 24.931 -34.896 34.788 1 53.3 ? CDP HMG 104 D 1 HETATM 35 C CEP HMG . . . H 2 24.003 -33.24 36.474 1 53.3 ? CEP HMG 104 D 1 HETATM 36 C CAP HMG . . . H 2 25.6 -32.38 34.579 1 53.3 ? CAP HMG 104 D 1 HETATM 37 O OAP HMG . . . H 2 26.781 -32.732 33.808 1 53.3 ? OAP HMG 104 D 1 HETATM 38 C C9P HMG . . . H 2 24.438 -31.92 33.651 1 53.3 ? C9P HMG 104 D 1 HETATM 39 O O9P HMG . . . H 2 23.549 -31.204 34.143 1 53.3 ? O9P HMG 104 D 1 HETATM 40 N N8P HMG . . . H 2 24.444 -32.336 32.352 1 53.3 ? N8P HMG 104 D 1 HETATM 41 C C7P HMG . . . H 2 23.453 -31.888 31.334 1 53.3 ? C7P HMG 104 D 1 HETATM 42 C C6P HMG . . . H 2 21.999 -32.332 31.672 1 53.3 ? C6P HMG 104 D 1 HETATM 43 C C5P HMG . . . H 2 20.926 -31.884 30.655 1 53.3 ? C5P HMG 104 D 1 HETATM 44 O O5P HMG . . . H 2 21.232 -31.121 29.731 1 53.3 ? O5P HMG 104 D 1 HETATM 45 N N4P HMG . . . H 2 19.669 -32.396 30.86 1 53.3 ? N4P HMG 104 D 1 HETATM 46 C C3P HMG . . . H 2 18.53 -32.312 29.891 1 53.3 ? C3P HMG 104 D 1 HETATM 47 C C2P HMG . . . H 2 18.718 -33.244 28.694 1 53.3 ? C2P HMG 104 D 1 HETATM 48 S S1P HMG . . . H 2 19.598 -32.396 27.314 1 53.3 ? S1P HMG 104 D 1 HETATM 49 C C1 HMG . . . H 2 18.404 -32.264 25.914 1 53.3 ? C1 HMG 104 D 1 HETATM 50 O O2 HMG . . . H 2 17.95 -33.268 25.344 1 53.3 ? O2 HMG 104 D 1 HETATM 51 C C2 HMG . . . H 2 17.977 -30.862 25.402 1 53.3 ? C2 HMG 104 D 1 HETATM 52 C C3 HMG . . . H 2 18.945 -30.138 24.403 1 53.3 ? C3 HMG 104 D 1 HETATM 53 O O7 HMG . . . H 2 18.796 -30.695 23.098 1 53.3 ? O7 HMG 104 D 1 HETATM 54 C C4 HMG . . . H 2 18.513 -28.644 24.349 1 53.3 ? C4 HMG 104 D 1 HETATM 55 C C5 HMG . . . H 2 19.391 -27.64 23.574 1 53.3 ? C5 HMG 104 D 1 HETATM 56 O O3 HMG . . . H 2 20.12 -26.835 24.123 1 53.3 ? O3 HMG 104 D 1 HETATM 57 O O4 HMG . . . H 2 19.258 -27.746 22.219 1 53.3 ? O4 HMG 104 D 1 HETATM 58 C C6 HMG . . . H 2 20.435 -30.316 24.804 1 53.3 ? C6 HMG 104 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 58 #