data_1DQB # _model_server_result.job_id AKeX_MqK4jrD1Srj_SoDQw _model_server_result.datetime_utc '2025-03-24 04:02:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1dqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":121}' # _entry.id 1DQB # _exptl.entry_id 1DQB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1DQB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 17 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 13 A CYS 13 1_555 A SG CYS 27 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 47 A CYS 47 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 56 A CYS 56 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 66 A CYS 66 1_555 A SG CYS 78 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 21 A ASN 21 1_555 B C1 NAG . A NAG 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 48 A ASN 48 1_555 C C1 NAG . A NAG 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 211 n n C1 O1 NAG sing 212 n n C1 O5 NAG sing 213 n n C1 H1 NAG sing 214 n n C2 C3 NAG sing 215 n n C2 N2 NAG sing 216 n n C2 H2 NAG sing 217 n n C3 C4 NAG sing 218 n n C3 O3 NAG sing 219 n n C3 H3 NAG sing 220 n n C4 C5 NAG sing 221 n n C4 O4 NAG sing 222 n n C4 H4 NAG sing 223 n n C5 C6 NAG sing 224 n n C5 O5 NAG sing 225 n n C5 H5 NAG sing 226 n n C6 O6 NAG sing 227 n n C6 H61 NAG sing 228 n n C6 H62 NAG sing 229 n n C7 C8 NAG sing 230 n n C7 N2 NAG sing 231 n n C7 O7 NAG doub 232 n n C8 H81 NAG sing 233 n n C8 H82 NAG sing 234 n n C8 H83 NAG sing 235 n n N2 HN2 NAG sing 236 n n O1 HO1 NAG sing 237 n n O3 HO3 NAG sing 238 n n O4 HO4 NAG sing 239 n n O6 HO6 NAG sing 240 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1DQB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 121 21 NAG ASN . C 2 NAG A 1 148 48 NAG ASN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -15.72 2.386 10.943 1 0 ? C1 NAG 121 A 1 HETATM 2 C C2 NAG . . . B 2 -14.576 3.391 10.829 1 0 ? C2 NAG 121 A 1 HETATM 3 C C3 NAG . . . B 2 -15.066 4.825 11.023 1 0 ? C3 NAG 121 A 1 HETATM 4 C C4 NAG . . . B 2 -16.172 4.91 12.076 1 0 ? C4 NAG 121 A 1 HETATM 5 C C5 NAG . . . B 2 -17.283 3.88 11.848 1 0 ? C5 NAG 121 A 1 HETATM 6 C C6 NAG . . . B 2 -18.623 4.557 11.556 1 0 ? C6 NAG 121 A 1 HETATM 7 C C7 NAG . . . B 2 -12.275 3.197 11.469 1 0 ? C7 NAG 121 A 1 HETATM 8 C C8 NAG . . . B 2 -11.581 1.84 11.34 1 0 ? C8 NAG 121 A 1 HETATM 9 N N2 NAG . . . B 2 -13.567 3.092 11.827 1 0 ? N2 NAG 121 A 1 HETATM 10 O O3 NAG . . . B 2 -15.541 5.327 9.799 1 0 ? O3 NAG 121 A 1 HETATM 11 O O4 NAG . . . B 2 -15.614 4.718 13.351 1 0 ? O4 NAG 121 A 1 HETATM 12 O O5 NAG . . . B 2 -16.949 3.047 10.764 1 0 ? O5 NAG 121 A 1 HETATM 13 O O6 NAG . . . B 2 -19.621 3.599 11.311 1 0 ? O6 NAG 121 A 1 HETATM 14 O O7 NAG . . . B 2 -11.684 4.25 11.258 1 0 ? O7 NAG 121 A 1 HETATM 15 H H1 NAG . . . B 2 -15.71 1.878 11.908 1 0 ? H1 NAG 121 A 1 HETATM 16 H H2 NAG . . . B 2 -14.079 3.29 9.865 1 0 ? H2 NAG 121 A 1 HETATM 17 H H3 NAG . . . B 2 -14.23 5.454 11.326 1 0 ? H3 NAG 121 A 1 HETATM 18 H H4 NAG . . . B 2 -16.603 5.911 12.063 1 0 ? H4 NAG 121 A 1 HETATM 19 H H5 NAG . . . B 2 -17.382 3.262 12.74 1 0 ? H5 NAG 121 A 1 HETATM 20 H H61 NAG . . . B 2 -18.55 5.201 10.68 1 0 ? H61 NAG 121 A 1 HETATM 21 H H62 NAG . . . B 2 -18.941 5.171 12.399 1 0 ? H62 NAG 121 A 1 HETATM 22 H H81 NAG . . . B 2 -12.096 1.102 11.955 1 0 ? H81 NAG 121 A 1 HETATM 23 H H82 NAG . . . B 2 -11.598 1.509 10.301 1 0 ? H82 NAG 121 A 1 HETATM 24 H H83 NAG . . . B 2 -10.545 1.92 11.669 1 0 ? H83 NAG 121 A 1 HETATM 25 H HN2 NAG . . . B 2 -13.824 2.816 12.753 1 0 ? HN2 NAG 121 A 1 HETATM 26 H HO3 NAG . . . B 2 -15.953 6.16 9.988 1 0 ? HO3 NAG 121 A 1 HETATM 27 H HO4 NAG . . . B 2 -16.101 5.271 13.948 1 0 ? HO4 NAG 121 A 1 HETATM 28 H HO6 NAG . . . B 2 -20.35 4.06 10.917 1 0 ? HO6 NAG 121 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 4068 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #